Wall clock time and date at job start Tue Mar 31 2020 16:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46906 * 2 1 4 4 N 1.46890 * 109.47292 * 120.00235 * 2 1 3 5 5 C 1.46898 * 111.00294 * 154.99850 * 4 2 1 6 6 C 1.53000 * 109.47407 * 180.02562 * 5 4 2 7 7 C 1.53008 * 109.46969 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.46632 * 179.97438 * 7 6 5 9 9 C 1.34785 * 119.99521 * 179.97438 * 8 7 6 10 10 O 1.21715 * 120.00261 * 359.97438 * 9 8 7 11 11 C 1.46255 * 119.99650 * 180.27579 * 9 8 7 12 12 C 1.35025 * 119.99918 * 172.93880 * 11 9 8 13 13 C 1.46960 * 119.99925 * 348.68186 * 12 11 9 14 14 C 1.40028 * 120.10009 * 316.40557 * 13 12 11 15 15 C 1.37594 * 119.89934 * 179.76739 * 14 13 12 16 16 C 1.39184 * 120.09927 * 0.50673 * 15 14 13 17 17 O 1.35570 * 119.89843 * 179.76454 * 16 15 14 18 18 C 1.34783 * 116.99886 * 174.33946 * 17 16 15 19 19 H 1.07998 * 119.99829 * 5.06153 * 18 17 16 20 20 C 1.38721 * 119.99912 * 185.05607 * 18 17 16 21 21 N 1.31504 * 120.00035 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99732 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47098 * 90.00722 * 22 20 18 24 24 H 1.48507 * 109.46797 * 210.00341 * 22 20 18 25 25 H 1.48504 * 109.47379 * 330.00326 * 22 20 18 26 26 C 1.39177 * 120.19984 * 359.74795 * 16 15 14 27 27 C 1.37596 * 120.10326 * 359.97438 * 26 16 15 28 28 H 1.09004 * 109.46974 * 300.00050 * 1 2 3 29 29 H 1.08998 * 109.47572 * 59.99679 * 1 2 3 30 30 H 1.08998 * 109.47094 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46638 * 240.00640 * 2 1 3 32 32 H 1.08995 * 109.47413 * 299.99751 * 3 2 1 33 33 H 1.09004 * 109.47440 * 60.00724 * 3 2 1 34 34 H 1.09002 * 109.47157 * 180.02562 * 3 2 1 35 35 H 1.00905 * 111.00359 * 31.04514 * 4 2 1 36 36 H 1.09004 * 109.46948 * 59.99734 * 5 4 2 37 37 H 1.08998 * 109.46843 * 300.00174 * 5 4 2 38 38 H 1.08992 * 109.47168 * 60.00042 * 6 5 4 39 39 H 1.09003 * 109.46680 * 299.99557 * 6 5 4 40 40 H 1.08992 * 109.47442 * 59.99841 * 7 6 5 41 41 H 1.09003 * 109.46758 * 299.99142 * 7 6 5 42 42 H 0.96995 * 120.00513 * 359.97438 * 8 7 6 43 43 H 1.08005 * 120.00497 * 352.93596 * 11 9 8 44 44 H 1.08000 * 120.00300 * 168.68630 * 12 11 9 45 45 H 1.08007 * 120.05004 * 0.02562 * 14 13 12 46 46 H 1.07995 * 119.95777 * 180.23340 * 15 14 13 47 47 H 0.96998 * 119.99874 * 179.97438 * 21 20 18 48 48 H 1.07998 * 119.94407 * 179.97438 * 26 16 15 49 49 H 1.08004 * 120.04756 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 3.3670 -1.2355 0.9806 6 6 3.8417 -1.9483 2.2484 7 6 5.2453 -2.5132 2.0206 8 7 5.7000 -3.1952 3.2349 9 6 6.9167 -3.7744 3.2669 10 8 7.6373 -3.7313 2.2870 11 6 7.3682 -4.4605 4.4771 12 6 8.5222 -5.1615 4.4650 13 6 9.1959 -5.4458 3.1902 14 6 8.4515 -5.8648 2.0806 15 6 9.0859 -6.1253 0.8878 16 6 10.4667 -5.9830 0.7859 17 8 11.0881 -6.2453 -0.3901 18 6 12.4072 -5.9768 -0.4583 19 1 12.9377 -5.6488 0.4233 20 6 13.0832 -6.1219 -1.6609 21 7 12.4370 -6.5208 -2.7345 22 14 14.9115 -5.7504 -1.7552 23 1 15.6831 -6.9840 -1.4583 24 1 15.2495 -5.2715 -3.1197 25 1 15.2552 -4.7005 -0.7628 26 6 11.2113 -5.5719 1.8875 27 6 10.5847 -5.3037 3.0829 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.6767 1.9563 -0.8899 33 1 1.6767 1.9563 0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.3794 -1.4182 1.4847 36 1 4.0523 -0.4219 0.7424 37 1 3.3430 -1.9444 0.1529 38 1 3.1564 -2.7618 2.4861 39 1 3.8656 -1.2396 3.0763 40 1 5.9304 -1.6995 1.7832 41 1 5.2218 -3.2218 1.1927 42 1 5.1257 -3.2299 4.0157 43 1 6.7788 -4.4064 5.3804 44 1 8.9501 -5.5133 5.3920 45 1 7.3804 -5.9793 2.1599 46 1 8.5122 -6.4448 0.0304 47 1 12.9097 -6.6219 -3.5755 48 1 12.2825 -5.4633 1.8040 49 1 11.1633 -4.9844 3.9371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493608424.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:37:20 Heat of formation + Delta-G solvation = -47.009052 kcal Electronic energy + Delta-G solvation = -27010.611226 eV Core-core repulsion = 23130.689510 eV Total energy + Delta-G solvation = -3879.921716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.10033 -40.38473 -38.65415 -38.17192 -36.35696 -34.59035 -33.98305 -33.65582 -31.82355 -30.69224 -29.41000 -28.14910 -27.44760 -25.96086 -24.02190 -23.44474 -22.56348 -22.30903 -21.43535 -20.42337 -19.74645 -18.85857 -18.03720 -17.20287 -17.09490 -16.43525 -16.38737 -16.30337 -15.97918 -15.65570 -15.59680 -15.42512 -15.16892 -14.87021 -14.54716 -14.49586 -14.17823 -13.75480 -13.68991 -13.55838 -13.47752 -13.32334 -13.03194 -12.96321 -12.66420 -12.52979 -12.35507 -12.28842 -12.22987 -12.12627 -12.07412 -11.94157 -11.64557 -11.24429 -10.96133 -10.66931 -10.38808 -10.02562 -9.56856 -9.44114 -8.55541 -8.48847 -6.16263 0.00194 0.71322 1.12916 1.32835 1.44985 1.51610 2.16650 2.34078 2.50016 2.86642 3.16406 3.20478 3.52213 3.92924 3.97176 4.04754 4.05955 4.06404 4.11375 4.16528 4.23904 4.28877 4.42768 4.49372 4.54581 4.61073 4.68828 4.73517 4.77168 4.80394 4.93207 4.95870 4.97837 5.05545 5.09702 5.14386 5.19921 5.26560 5.27684 5.29104 5.37600 5.46992 5.55591 5.68026 5.72383 5.85373 6.01971 6.04555 6.25067 6.47461 6.74562 6.94818 7.47450 7.77086 8.74238 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011557 B = 0.002066 C = 0.001820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.213705 B =13550.467865 C =15381.353617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.072 3.928 3 C -0.139 4.139 4 N -0.687 5.687 5 C 0.062 3.938 6 C -0.108 4.108 7 C 0.123 3.877 8 N -0.715 5.715 9 C 0.522 3.478 10 O -0.571 6.571 11 C -0.229 4.229 12 C 0.003 3.997 13 C -0.161 4.161 14 C 0.014 3.986 15 C -0.222 4.222 16 C 0.126 3.874 17 O -0.232 6.232 18 C -0.415 4.415 19 H 0.103 0.897 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.023 2.977 23 H -0.259 1.259 24 H -0.270 1.270 25 H -0.253 1.253 26 C -0.259 4.259 27 C -0.048 4.048 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.348 0.652 36 H 0.064 0.936 37 H 0.027 0.973 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.046 0.954 42 H 0.417 0.583 43 H 0.176 0.824 44 H 0.170 0.830 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.273 0.727 48 H 0.120 0.880 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.996 11.027 16.532 29.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 C -0.197 4.197 4 N -0.319 5.319 5 C -0.068 4.068 6 C -0.146 4.146 7 C -0.002 4.002 8 N -0.368 5.368 9 C 0.313 3.687 10 O -0.451 6.451 11 C -0.250 4.250 12 C -0.016 4.016 13 C -0.161 4.161 14 C -0.004 4.004 15 C -0.242 4.242 16 C 0.075 3.925 17 O -0.138 6.138 18 C -0.491 4.491 19 H 0.120 0.880 20 C -0.223 4.223 21 N -0.559 5.559 22 Si 0.841 3.159 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.177 1.177 26 C -0.278 4.278 27 C -0.066 4.066 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.167 0.833 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.254 0.746 43 H 0.193 0.807 44 H 0.187 0.813 45 H 0.137 0.863 46 H 0.118 0.882 47 H 0.082 0.918 48 H 0.138 0.862 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.354 11.527 15.689 28.897 hybrid contribution 0.442 -0.658 -1.271 1.498 sum -20.912 10.868 14.418 27.628 Atomic orbital electron populations 1.21927 0.93291 1.02426 1.03001 1.21579 0.95894 0.95435 0.90881 1.21787 1.00443 0.95453 1.02041 1.60515 1.03441 1.33305 1.34671 1.21834 0.91196 0.97527 0.96280 1.21567 0.93688 1.00618 0.98771 1.21150 0.95876 0.95796 0.87400 1.45802 1.17366 1.56608 1.17031 1.19176 0.81353 0.79300 0.88884 1.91009 1.55301 1.60707 1.38109 1.23079 1.00026 1.03443 0.98430 1.22585 0.92062 0.91135 0.95805 1.18899 0.93096 1.08718 0.95422 1.20671 0.97713 0.91651 0.90392 1.20184 0.91318 1.12960 0.99692 1.20014 0.92897 0.92985 0.86581 1.83873 1.24716 1.74472 1.30730 1.21888 0.81573 1.47463 0.98186 0.88012 1.26693 1.06174 0.96108 0.93295 1.70177 1.39131 1.45477 1.01124 0.84544 0.73303 0.79426 0.78617 1.18397 1.19500 1.17708 1.21095 1.00331 1.12074 0.94329 1.21191 0.93783 0.95325 0.96289 0.91587 0.91290 0.92193 0.94661 0.91762 0.92113 0.93905 0.83295 0.91732 0.95519 0.89725 0.89555 0.93490 0.93585 0.74613 0.80659 0.81280 0.86317 0.88170 0.91770 0.86216 0.83366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.18 71.98 0.66 -0.72 16 2 C 0.07 0.92 3.22 44.92 0.14 1.06 16 3 C -0.14 -1.85 9.41 71.98 0.68 -1.17 16 4 N -0.69 -8.83 6.31 -491.60 -3.10 -11.93 16 5 C 0.06 0.91 5.48 86.30 0.47 1.38 16 6 C -0.11 -1.36 5.59 30.60 0.17 -1.19 16 7 C 0.12 2.46 5.67 86.38 0.49 2.95 16 8 N -0.72 -13.21 5.55 -467.49 -2.60 -15.81 16 9 C 0.52 13.86 6.77 86.32 0.58 14.44 16 10 O -0.57 -22.14 12.17 -4.40 -0.05 -22.19 16 11 C -0.23 -4.42 9.90 23.62 0.23 -4.19 16 12 C 0.00 0.08 9.80 23.82 0.23 0.31 16 13 C -0.16 -5.64 4.54 -20.13 -0.09 -5.73 16 14 C 0.01 0.57 6.59 22.55 0.15 0.72 16 15 C -0.22 -11.03 9.97 22.35 0.22 -10.80 16 16 C 0.13 6.97 6.66 22.72 0.15 7.12 16 17 O -0.23 -15.02 9.74 -20.28 -0.20 -15.22 16 18 C -0.42 -25.59 9.48 67.94 0.64 -24.94 16 19 H 0.10 5.77 5.18 -2.91 -0.02 5.75 16 20 C -0.03 -1.51 5.49 84.86 0.47 -1.05 16 21 N -0.92 -58.90 13.67 21.62 0.30 -58.61 16 22 Si 1.02 44.63 29.55 68.60 2.03 46.65 16 23 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 26 C -0.26 -12.38 9.14 22.34 0.20 -12.18 16 27 C -0.05 -1.81 9.78 22.55 0.22 -1.59 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.49 8.12 -2.39 -0.02 0.47 16 31 H 0.04 0.52 7.80 -2.39 -0.02 0.50 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.04 0.66 7.45 -2.39 -0.02 0.64 16 35 H 0.35 3.50 8.35 -89.69 -0.75 2.75 16 36 H 0.06 1.11 7.44 -2.39 -0.02 1.09 16 37 H 0.03 0.44 8.05 -2.39 -0.02 0.42 16 38 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.42 4.26 8.45 -92.71 -0.78 3.48 16 43 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 44 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.12 4.27 7.02 -2.91 -0.02 4.25 16 46 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 47 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 48 H 0.12 5.71 5.62 -2.91 -0.02 5.70 16 49 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -84.21 404.20 1.44 -82.77 By element: Atomic # 1 Polarization: 30.49 SS G_CDS: -0.58 Total: 29.92 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 5.64 Total: -35.58 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -5.40 Total: -86.35 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.25 Total: -37.41 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -84.21 1.44 -82.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493608424.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.760 kcal (2) G-P(sol) polarization free energy of solvation -84.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds