Wall clock time and date at job start Tue Mar 31 2020 16:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47254 * 2 1 4 4 N 1.46499 * 109.46874 * 119.99694 * 2 1 3 5 5 C 1.46499 * 120.00068 * 300.00108 * 4 2 1 6 6 C 1.50703 * 109.47319 * 269.99750 * 5 4 2 7 7 H 1.08004 * 119.99424 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00541 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00493 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99363 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47207 * 90.00041 * 10 8 6 12 12 H 1.48503 * 109.46509 * 209.99437 * 10 8 6 13 13 H 1.48492 * 109.47240 * 329.99301 * 10 8 6 14 14 C 1.34780 * 120.00114 * 120.00327 * 4 2 1 15 15 O 1.21278 * 119.99989 * 180.02562 * 14 4 2 16 16 C 1.50702 * 119.99983 * 359.97438 * 14 4 2 17 17 C 1.52990 * 109.47267 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.47108 * 179.97438 * 17 16 14 19 19 N 1.46508 * 109.47135 * 179.97438 * 18 17 16 20 20 C 1.34780 * 119.99852 * 179.97438 * 19 18 17 21 21 O 1.21557 * 120.00061 * 0.02562 * 20 19 18 22 22 C 1.47845 * 119.99555 * 180.02562 * 20 19 18 23 23 C 1.39575 * 120.13807 * 180.02562 * 22 20 19 24 24 C 1.37966 * 119.85100 * 179.97438 * 23 22 20 25 25 C 1.38359 * 120.14194 * 359.97438 * 24 23 22 26 26 C 1.38356 * 120.29572 * 0.04433 * 25 24 23 27 27 C 1.37965 * 120.14354 * 359.95888 * 26 25 24 28 28 H 1.08996 * 109.47230 * 300.00433 * 1 2 3 29 29 H 1.08998 * 109.46581 * 60.00036 * 1 2 3 30 30 H 1.08998 * 109.46651 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47230 * 239.99567 * 2 1 3 32 32 H 1.08992 * 109.47101 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46842 * 299.99806 * 3 2 1 34 34 H 1.08996 * 109.46898 * 59.99369 * 3 2 1 35 35 H 1.09001 * 109.47393 * 29.99943 * 5 4 2 36 36 H 1.09004 * 109.47540 * 150.00323 * 5 4 2 37 37 H 0.96998 * 120.00549 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.47102 * 59.99979 * 16 14 4 39 39 H 1.09007 * 109.46728 * 300.00426 * 16 14 4 40 40 H 1.09002 * 109.47206 * 59.99884 * 17 16 14 41 41 H 1.08999 * 109.47620 * 300.00100 * 17 16 14 42 42 H 1.08996 * 109.46951 * 60.00477 * 18 17 16 43 43 H 1.08996 * 109.47668 * 300.00067 * 18 17 16 44 44 H 0.97002 * 119.99932 * 0.02562 * 19 18 17 45 45 H 1.07998 * 120.08057 * 359.70005 * 23 22 20 46 46 H 1.08000 * 119.93085 * 179.97438 * 24 23 22 47 47 H 1.08003 * 119.85292 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.93259 * 179.97438 * 26 25 24 49 49 H 1.08003 * 120.07139 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7031 0.8019 2.9831 7 1 3.5427 1.0363 2.3454 8 6 2.5811 1.4110 4.2140 9 7 3.4878 2.2762 4.6124 10 14 1.1284 1.0060 5.3164 11 1 1.4778 -0.1392 6.1949 12 1 0.7969 2.1878 6.1522 13 1 -0.0440 0.6477 4.4786 14 6 2.7932 -1.7864 1.0727 15 8 3.1970 -2.3583 2.0630 16 6 3.1569 -2.3016 -0.2960 17 6 4.0361 -3.5458 -0.1556 18 6 4.4048 -4.0692 -1.5451 19 7 5.2472 -5.2603 -1.4106 20 6 5.6953 -5.8966 -2.5111 21 8 5.4009 -5.4819 -3.6151 22 6 6.5449 -7.0988 -2.3753 23 6 7.0110 -7.7597 -3.5129 24 6 7.8040 -8.8808 -3.3793 25 6 8.1376 -9.3499 -2.1211 26 6 7.6785 -8.6996 -0.9894 27 6 6.8848 -7.5775 -1.1091 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.6903 0.2975 2.4843 36 1 1.6237 -1.0225 3.2293 37 1 3.4017 2.7050 5.4782 38 1 3.7017 -1.5310 -0.8414 39 1 2.2483 -2.5587 -0.8407 40 1 3.4909 -4.3163 0.3897 41 1 4.9446 -3.2892 0.3892 42 1 4.9498 -3.2990 -2.0907 43 1 3.4961 -4.3261 -2.0896 44 1 5.4818 -5.5915 -0.5296 45 1 6.7480 -7.3970 -4.4955 46 1 8.1650 -9.3934 -4.2586 47 1 8.7590 -10.2277 -2.0219 48 1 7.9422 -9.0711 -0.0102 49 1 6.5275 -7.0706 -0.2249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522585444.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:29 Heat of formation + Delta-G solvation = -56.353057 kcal Electronic energy + Delta-G solvation = -27563.929148 eV Core-core repulsion = 23683.602246 eV Total energy + Delta-G solvation = -3880.326902 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44114 -39.41072 -38.54792 -36.28567 -35.61030 -33.12973 -32.62337 -31.39814 -31.26174 -31.00940 -28.57753 -26.81416 -26.56255 -24.08179 -23.01074 -22.49526 -21.67931 -21.19090 -20.57677 -18.37095 -17.99617 -16.91677 -16.81279 -16.54509 -16.05066 -16.04342 -15.29687 -15.07227 -15.05086 -14.79992 -14.23018 -14.01011 -13.82846 -13.63249 -13.58507 -13.25157 -13.02170 -12.70411 -12.56315 -12.18675 -12.07501 -12.04654 -11.83218 -11.72401 -11.58528 -11.46217 -11.31151 -10.98253 -10.86956 -10.84395 -10.51984 -10.32811 -10.18145 -10.10593 -9.47180 -9.46776 -9.39681 -9.19012 -9.00695 -8.57830 -7.71392 -6.07896 -4.05206 0.48818 0.96160 2.60159 2.89137 3.28058 3.33378 3.34181 3.36230 3.53390 3.80281 4.35249 4.39532 4.41229 4.53492 4.70856 4.74492 4.96320 4.97387 5.03224 5.08584 5.16695 5.24196 5.33174 5.39938 5.44273 5.52584 5.57190 5.58590 5.61376 5.67236 5.90929 5.95514 5.98963 6.03592 6.07422 6.10059 6.13569 6.25244 6.27591 6.30706 6.47258 6.51726 6.77548 6.96057 6.99468 7.25178 7.37133 7.62735 7.95972 8.27702 8.48474 8.93901 8.99444 9.52851 11.05265 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.002046 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.615440 B =13679.387101 C =14642.453118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.132 3.868 3 C -0.157 4.157 4 N -0.588 5.588 5 C 0.215 3.785 6 C -0.520 4.520 7 H 0.076 0.924 8 C 0.071 3.929 9 N -0.898 5.898 10 Si 0.873 3.127 11 H -0.275 1.275 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.507 3.493 15 O -0.544 6.544 16 C -0.137 4.137 17 C -0.116 4.116 18 C 0.119 3.881 19 N -0.723 5.723 20 C 0.556 3.444 21 O -0.539 6.539 22 C -0.134 4.134 23 C -0.061 4.061 24 C -0.129 4.129 25 C -0.096 4.096 26 C -0.127 4.127 27 C -0.086 4.086 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.080 0.920 35 H 0.030 0.970 36 H 0.034 0.966 37 H 0.264 0.736 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.402 0.598 45 H 0.136 0.864 46 H 0.129 0.871 47 H 0.127 0.873 48 H 0.130 0.870 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -18.965 -15.586 24.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 C -0.215 4.215 4 N -0.320 5.320 5 C 0.094 3.906 6 C -0.559 4.559 7 H 0.094 0.906 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.192 1.192 14 C 0.294 3.706 15 O -0.421 6.421 16 C -0.178 4.178 17 C -0.154 4.154 18 C -0.005 4.005 19 N -0.375 5.375 20 C 0.344 3.656 21 O -0.417 6.417 22 C -0.137 4.137 23 C -0.080 4.080 24 C -0.147 4.147 25 C -0.115 4.115 26 C -0.145 4.145 27 C -0.105 4.105 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.238 0.762 45 H 0.154 0.846 46 H 0.147 0.853 47 H 0.145 0.855 48 H 0.148 0.852 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.521 -18.796 -15.677 24.727 hybrid contribution -0.558 -0.105 1.188 1.316 sum 2.963 -18.901 -14.489 23.999 Atomic orbital electron populations 1.22172 0.95711 1.01749 1.02464 1.21051 0.93939 0.94436 0.87779 1.22134 1.01749 0.95306 1.02297 1.48030 1.49478 1.26579 1.07914 1.19616 0.96309 0.95111 0.79562 1.21331 1.09207 1.22393 1.02945 0.90575 1.24858 0.96061 0.94823 0.97404 1.69888 1.34584 1.28414 1.20782 0.86897 0.83480 0.78195 0.81383 1.20034 1.21178 1.19153 1.20294 0.78865 0.80779 0.90648 1.90662 1.53302 1.58340 1.39841 1.21571 1.01071 0.98362 0.96746 1.21517 1.01192 0.97495 0.95204 1.21461 0.94529 0.86509 0.97967 1.45948 1.52552 1.29954 1.09036 1.18289 0.79765 0.83173 0.84405 1.90774 1.58332 1.66915 1.25699 1.19994 1.01845 0.97396 0.94508 1.21313 0.94330 0.93745 0.98604 1.21189 0.98915 0.96767 0.97860 1.21406 0.98210 0.99253 0.92583 1.21153 0.98323 0.95872 0.99178 1.21384 0.96673 0.96090 0.96339 0.91644 0.91987 0.92883 0.90282 0.92434 0.93211 0.90107 0.95179 0.94833 0.92654 0.88980 0.89282 0.90522 0.90247 0.91090 0.91199 0.76245 0.84625 0.85288 0.85547 0.85244 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.17 37.16 0.34 -1.85 16 2 C 0.13 2.02 3.17 -67.93 -0.22 1.81 16 3 C -0.16 -2.56 8.47 37.16 0.31 -2.24 16 4 N -0.59 -11.57 2.39 -167.46 -0.40 -11.97 16 5 C 0.21 5.10 3.66 -5.19 -0.02 5.08 16 6 C -0.52 -14.43 8.38 -34.44 -0.29 -14.72 16 7 H 0.08 2.31 7.87 -52.48 -0.41 1.90 16 8 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 9 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 10 Si 0.87 21.37 27.47 -169.99 -4.67 16.70 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 14 C 0.51 9.73 7.67 -10.98 -0.08 9.65 16 15 O -0.54 -12.70 15.56 5.56 0.09 -12.61 16 16 C -0.14 -1.79 4.01 -27.89 -0.11 -1.91 16 17 C -0.12 -1.38 4.62 -26.74 -0.12 -1.50 16 18 C 0.12 1.26 5.67 -4.04 -0.02 1.24 16 19 N -0.72 -7.37 5.51 -61.25 -0.34 -7.71 16 20 C 0.56 6.64 7.77 -12.33 -0.10 6.55 16 21 O -0.54 -8.22 16.35 5.32 0.09 -8.13 16 22 C -0.13 -1.33 5.87 -104.97 -0.62 -1.94 16 23 C -0.06 -0.56 9.60 -39.18 -0.38 -0.93 16 24 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16 25 C -0.10 -0.60 10.04 -39.49 -0.40 -1.00 16 26 C -0.13 -0.84 10.03 -39.64 -0.40 -1.24 16 27 C -0.09 -0.67 9.54 -39.19 -0.37 -1.04 16 28 H 0.06 0.99 6.66 -51.93 -0.35 0.65 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.98 5.77 -51.93 -0.30 0.68 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.57 6.92 -51.93 -0.36 1.21 16 35 H 0.03 0.69 5.48 -51.93 -0.28 0.40 16 36 H 0.03 0.86 6.85 -51.93 -0.36 0.51 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.09 1.10 7.79 -51.93 -0.40 0.70 16 39 H 0.09 0.96 7.79 -51.93 -0.40 0.55 16 40 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 41 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.40 3.24 6.51 -40.82 -0.27 2.98 16 45 H 0.14 1.24 7.65 -52.49 -0.40 0.84 16 46 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 47 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 48 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 49 H 0.13 0.76 6.41 -52.48 -0.34 0.42 16 LS Contribution 398.40 15.07 6.00 6.00 Total: -1.00 -35.65 398.40 -9.10 -44.75 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.68 Total: 2.91 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.96 Total: -3.43 kcal Atomic # 7 Polarization: -46.23 SS G_CDS: 0.04 Total: -46.19 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: 0.17 Total: -20.74 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.67 Total: 16.70 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.65 -9.10 -44.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522585444.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.600 kcal (2) G-P(sol) polarization free energy of solvation -35.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds