Wall clock time and date at job start Tue Mar 31 2020 16:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47254 * 2 1 4 4 N 1.46499 * 109.46874 * 119.99694 * 2 1 3 5 5 C 1.46499 * 120.00068 * 300.00108 * 4 2 1 6 6 C 1.50703 * 109.47319 * 269.99750 * 5 4 2 7 7 H 1.08004 * 119.99424 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00541 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00493 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99363 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47207 * 90.00041 * 10 8 6 12 12 H 1.48503 * 109.46509 * 209.99437 * 10 8 6 13 13 H 1.48492 * 109.47240 * 329.99301 * 10 8 6 14 14 C 1.34780 * 120.00114 * 120.00327 * 4 2 1 15 15 O 1.21278 * 119.99989 * 180.02562 * 14 4 2 16 16 C 1.50702 * 119.99983 * 359.97438 * 14 4 2 17 17 C 1.52990 * 109.47267 * 180.02562 * 16 14 4 18 18 C 1.52998 * 109.47108 * 179.97438 * 17 16 14 19 19 N 1.46508 * 109.47135 * 179.97438 * 18 17 16 20 20 C 1.34780 * 119.99852 * 179.97438 * 19 18 17 21 21 O 1.21557 * 120.00061 * 0.02562 * 20 19 18 22 22 C 1.47845 * 119.99555 * 180.02562 * 20 19 18 23 23 C 1.39575 * 120.13807 * 180.02562 * 22 20 19 24 24 C 1.37966 * 119.85100 * 179.97438 * 23 22 20 25 25 C 1.38359 * 120.14194 * 359.97438 * 24 23 22 26 26 C 1.38356 * 120.29572 * 0.04433 * 25 24 23 27 27 C 1.37965 * 120.14354 * 359.95888 * 26 25 24 28 28 H 1.08996 * 109.47230 * 300.00433 * 1 2 3 29 29 H 1.08998 * 109.46581 * 60.00036 * 1 2 3 30 30 H 1.08998 * 109.46651 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47230 * 239.99567 * 2 1 3 32 32 H 1.08992 * 109.47101 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.46842 * 299.99806 * 3 2 1 34 34 H 1.08996 * 109.46898 * 59.99369 * 3 2 1 35 35 H 1.09001 * 109.47393 * 29.99943 * 5 4 2 36 36 H 1.09004 * 109.47540 * 150.00323 * 5 4 2 37 37 H 0.96998 * 120.00549 * 179.97438 * 9 8 6 38 38 H 1.09002 * 109.47102 * 59.99979 * 16 14 4 39 39 H 1.09007 * 109.46728 * 300.00426 * 16 14 4 40 40 H 1.09002 * 109.47206 * 59.99884 * 17 16 14 41 41 H 1.08999 * 109.47620 * 300.00100 * 17 16 14 42 42 H 1.08996 * 109.46951 * 60.00477 * 18 17 16 43 43 H 1.08996 * 109.47668 * 300.00067 * 18 17 16 44 44 H 0.97002 * 119.99932 * 0.02562 * 19 18 17 45 45 H 1.07998 * 120.08057 * 359.70005 * 23 22 20 46 46 H 1.08000 * 119.93085 * 179.97438 * 24 23 22 47 47 H 1.08003 * 119.85292 * 180.02562 * 25 24 23 48 48 H 1.08001 * 119.93259 * 179.97438 * 26 25 24 49 49 H 1.08003 * 120.07139 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 1.6643 -0.1900 2.5268 6 6 2.7031 0.8019 2.9831 7 1 3.5427 1.0363 2.3454 8 6 2.5811 1.4110 4.2140 9 7 3.4878 2.2762 4.6124 10 14 1.1284 1.0060 5.3164 11 1 1.4778 -0.1392 6.1949 12 1 0.7969 2.1878 6.1522 13 1 -0.0440 0.6477 4.4786 14 6 2.7932 -1.7864 1.0727 15 8 3.1970 -2.3583 2.0630 16 6 3.1569 -2.3016 -0.2960 17 6 4.0361 -3.5458 -0.1556 18 6 4.4048 -4.0692 -1.5451 19 7 5.2472 -5.2603 -1.4106 20 6 5.6953 -5.8966 -2.5111 21 8 5.4009 -5.4819 -3.6151 22 6 6.5449 -7.0988 -2.3753 23 6 7.0110 -7.7597 -3.5129 24 6 7.8040 -8.8808 -3.3793 25 6 8.1376 -9.3499 -2.1211 26 6 7.6785 -8.6996 -0.9894 27 6 6.8848 -7.5775 -1.1091 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 0.6903 0.2975 2.4843 36 1 1.6237 -1.0225 3.2293 37 1 3.4017 2.7050 5.4782 38 1 3.7017 -1.5310 -0.8414 39 1 2.2483 -2.5587 -0.8407 40 1 3.4909 -4.3163 0.3897 41 1 4.9446 -3.2892 0.3892 42 1 4.9498 -3.2990 -2.0907 43 1 3.4961 -4.3261 -2.0896 44 1 5.4818 -5.5915 -0.5296 45 1 6.7480 -7.3970 -4.4955 46 1 8.1650 -9.3934 -4.2586 47 1 8.7590 -10.2277 -2.0219 48 1 7.9422 -9.0711 -0.0102 49 1 6.5275 -7.0706 -0.2249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522585444.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:29 Heat of formation + Delta-G solvation = -79.770559 kcal Electronic energy + Delta-G solvation = -27564.944607 eV Core-core repulsion = 23683.602246 eV Total energy + Delta-G solvation = -3881.342361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25505 -40.87090 -39.24745 -37.69280 -36.69265 -34.90362 -33.94258 -32.55612 -32.09448 -31.85324 -30.24573 -28.03963 -27.78226 -25.05967 -24.18366 -23.44167 -22.86269 -22.40575 -21.43577 -19.44225 -19.09941 -19.05149 -18.15217 -17.34207 -17.08423 -16.89895 -16.74483 -16.29530 -15.97611 -15.76128 -15.46655 -15.10737 -14.93009 -14.79701 -14.59012 -14.54579 -14.19158 -14.01157 -13.66448 -13.58975 -13.42491 -13.16063 -13.03212 -12.89416 -12.68022 -12.60186 -12.48687 -12.31650 -12.26809 -12.01681 -11.91909 -11.88002 -11.69861 -11.50991 -11.10718 -10.79173 -10.58483 -10.27713 -9.95632 -9.87224 -9.37185 -8.30003 -6.31942 -0.14764 0.41068 1.31532 1.34957 1.42929 1.82663 1.84397 2.03338 2.31751 2.40451 2.90174 3.03897 3.56776 3.65881 3.89630 3.95425 4.00719 4.01713 4.04999 4.23010 4.27817 4.29567 4.44215 4.46632 4.53477 4.54739 4.61888 4.69699 4.77568 4.86720 4.88738 4.93017 4.98268 5.05628 5.06452 5.10625 5.11837 5.20897 5.30992 5.39062 5.42348 5.45198 5.49742 5.50963 5.60165 5.73424 5.94665 6.29486 6.43984 6.68655 6.78686 7.10254 7.26547 7.47579 8.86540 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018194 B = 0.002046 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.615440 B =13679.387101 C =14642.453118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 C -0.152 4.152 4 N -0.596 5.596 5 C 0.224 3.776 6 C -0.516 4.516 7 H 0.033 0.967 8 C 0.008 3.992 9 N -0.946 5.946 10 Si 0.940 3.060 11 H -0.278 1.278 12 H -0.278 1.278 13 H -0.241 1.241 14 C 0.495 3.505 15 O -0.595 6.595 16 C -0.126 4.126 17 C -0.104 4.104 18 C 0.127 3.873 19 N -0.716 5.716 20 C 0.554 3.446 21 O -0.581 6.581 22 C -0.158 4.158 23 C -0.079 4.079 24 C -0.131 4.131 25 C -0.092 4.092 26 C -0.131 4.131 27 C -0.090 4.090 28 H 0.042 0.958 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.120 0.880 32 H 0.033 0.967 33 H 0.089 0.911 34 H 0.041 0.959 35 H 0.046 0.954 36 H 0.014 0.986 37 H 0.266 0.734 38 H 0.110 0.890 39 H 0.126 0.874 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.412 0.588 45 H 0.125 0.875 46 H 0.151 0.849 47 H 0.156 0.844 48 H 0.154 0.846 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.284 -21.022 -16.881 27.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 C -0.210 4.210 4 N -0.327 5.327 5 C 0.102 3.898 6 C -0.555 4.555 7 H 0.052 0.948 8 C -0.190 4.190 9 N -0.587 5.587 10 Si 0.764 3.236 11 H -0.204 1.204 12 H -0.203 1.203 13 H -0.164 1.164 14 C 0.285 3.715 15 O -0.477 6.477 16 C -0.166 4.166 17 C -0.143 4.143 18 C 0.003 3.997 19 N -0.368 5.368 20 C 0.343 3.657 21 O -0.462 6.462 22 C -0.161 4.161 23 C -0.098 4.098 24 C -0.149 4.149 25 C -0.110 4.110 26 C -0.148 4.148 27 C -0.109 4.109 28 H 0.061 0.939 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.137 0.863 32 H 0.052 0.948 33 H 0.107 0.893 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.128 0.872 39 H 0.144 0.856 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.249 0.751 45 H 0.143 0.857 46 H 0.169 0.831 47 H 0.174 0.826 48 H 0.171 0.829 49 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.277 -20.851 -16.997 26.997 hybrid contribution -0.054 0.517 1.545 1.630 sum 2.223 -20.333 -15.452 25.635 Atomic orbital electron populations 1.22142 0.93702 1.02701 1.03014 1.21452 0.95559 0.93481 0.87249 1.22073 1.00187 0.96454 1.02289 1.48171 1.49741 1.27050 1.07715 1.19230 0.95562 0.93250 0.81770 1.21514 1.08777 1.22833 1.02356 0.94829 1.25790 0.99240 0.94728 0.99195 1.70042 1.37033 1.30087 1.21542 0.85821 0.80561 0.77873 0.79351 1.20377 1.20349 1.16394 1.21394 0.77541 0.80057 0.92502 1.90630 1.55000 1.59884 1.42178 1.21594 1.03050 0.98950 0.93020 1.21373 1.00198 0.97031 0.95683 1.21338 0.94867 0.86601 0.96869 1.45901 1.52012 1.29582 1.09326 1.18665 0.79527 0.83577 0.83972 1.90738 1.60101 1.68237 1.27123 1.19965 1.03007 0.97367 0.95789 1.21400 0.95458 0.94897 0.98061 1.21470 0.98115 0.95973 0.99322 1.21812 0.97496 0.99677 0.91983 1.21515 0.97512 0.95223 1.00595 1.21590 0.96768 0.96633 0.95911 0.93869 0.88648 0.91719 0.86270 0.94806 0.89279 0.93946 0.93656 0.96836 0.92549 0.87232 0.85618 0.90765 0.91964 0.91321 0.90477 0.75070 0.85744 0.83106 0.82645 0.82856 0.84074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 9.17 71.98 0.66 -3.04 16 2 C 0.12 3.52 3.17 44.99 0.14 3.67 16 3 C -0.15 -4.84 8.47 71.98 0.61 -4.23 16 4 N -0.60 -23.09 2.39 -802.12 -1.91 -25.00 16 5 C 0.22 10.74 3.66 85.63 0.31 11.05 16 6 C -0.52 -29.72 8.38 25.60 0.21 -29.51 16 7 H 0.03 2.16 7.87 -2.91 -0.02 2.14 16 8 C 0.01 0.46 5.47 84.66 0.46 0.92 16 9 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 10 Si 0.94 44.63 27.47 68.60 1.88 46.52 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 14 C 0.50 18.78 7.67 87.66 0.67 19.45 16 15 O -0.60 -28.41 15.56 -3.02 -0.05 -28.46 16 16 C -0.13 -3.02 4.01 29.85 0.12 -2.91 16 17 C -0.10 -2.37 4.62 30.59 0.14 -2.23 16 18 C 0.13 2.53 5.67 86.38 0.49 3.02 16 19 N -0.72 -14.19 5.51 -465.96 -2.57 -16.75 16 20 C 0.55 13.28 7.77 86.79 0.67 13.96 16 21 O -0.58 -18.05 16.35 -3.89 -0.06 -18.11 16 22 C -0.16 -3.09 5.87 -20.09 -0.12 -3.21 16 23 C -0.08 -1.44 9.60 22.53 0.22 -1.22 16 24 C -0.13 -1.61 10.03 22.23 0.22 -1.39 16 25 C -0.09 -0.90 10.04 22.33 0.22 -0.67 16 26 C -0.13 -1.42 10.03 22.23 0.22 -1.19 16 27 C -0.09 -1.29 9.54 22.53 0.21 -1.08 16 28 H 0.04 1.21 6.66 -2.39 -0.02 1.19 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.12 2.44 5.77 -2.39 -0.01 2.42 16 32 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.04 1.66 6.92 -2.39 -0.02 1.64 16 35 H 0.05 2.04 5.48 -2.39 -0.01 2.02 16 36 H 0.01 0.71 6.85 -2.38 -0.02 0.69 16 37 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 38 H 0.11 2.31 7.79 -2.39 -0.02 2.29 16 39 H 0.13 2.16 7.79 -2.38 -0.02 2.14 16 40 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 41 H 0.06 1.63 8.10 -2.39 -0.02 1.62 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.41 6.36 6.51 -92.71 -0.60 5.76 16 45 H 0.12 2.42 7.65 -2.91 -0.02 2.40 16 46 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 48 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 49 H 0.14 1.49 6.41 -2.91 -0.02 1.47 16 Total: -1.00 -83.45 398.40 3.37 -80.08 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.29 Total: 19.74 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 5.49 Total: 1.40 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -4.18 Total: -101.17 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.11 Total: -46.57 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.88 Total: 46.52 kcal Total: -83.45 3.37 -80.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522585444.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.314 kcal (2) G-P(sol) polarization free energy of solvation -83.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds