Wall clock time and date at job start Tue Mar 31 2020 16:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46483 * 2 1 4 4 N 1.46494 * 109.47305 * 119.99952 * 2 1 3 5 5 C 1.46500 * 119.99839 * 300.00226 * 4 2 1 6 6 C 1.50705 * 109.47370 * 270.00052 * 5 4 2 7 7 H 1.08004 * 119.99711 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00287 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00076 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00164 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46908 * 89.99996 * 10 8 6 12 12 H 1.48505 * 109.47279 * 209.99682 * 10 8 6 13 13 H 1.48493 * 109.47232 * 330.00199 * 10 8 6 14 14 C 1.34773 * 120.00247 * 120.00454 * 4 2 1 15 15 O 1.21274 * 120.00284 * 180.02562 * 14 4 2 16 16 C 1.50698 * 119.99781 * 359.97438 * 14 4 2 17 17 C 1.52997 * 109.47405 * 180.02562 * 16 14 4 18 18 N 1.46500 * 109.47538 * 179.97438 * 17 16 14 19 19 C 1.34773 * 119.99913 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00637 * 359.97438 * 19 18 17 21 21 C 1.50698 * 119.99781 * 180.02562 * 19 18 17 22 22 C 1.50707 * 109.47247 * 180.02562 * 21 19 18 23 23 C 1.38238 * 119.99792 * 89.99994 * 22 21 19 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97930 * 22 21 19 28 28 H 1.08993 * 109.47174 * 299.99659 * 1 2 3 29 29 H 1.08998 * 109.47357 * 60.00026 * 1 2 3 30 30 H 1.09007 * 109.46554 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47045 * 240.00588 * 2 1 3 32 32 H 1.09006 * 109.46740 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47137 * 299.99693 * 3 2 1 34 34 H 1.08993 * 109.47137 * 60.00319 * 3 2 1 35 35 H 1.09002 * 109.47634 * 29.99840 * 5 4 2 36 36 H 1.09001 * 109.47477 * 150.00410 * 5 4 2 37 37 H 0.97006 * 120.00562 * 180.02562 * 9 8 6 38 38 H 1.08997 * 109.47815 * 60.00046 * 16 14 4 39 39 H 1.09004 * 109.47012 * 300.00078 * 16 14 4 40 40 H 1.09000 * 109.47395 * 59.99115 * 17 16 14 41 41 H 1.09004 * 109.46800 * 299.99841 * 17 16 14 42 42 H 0.96998 * 119.99656 * 0.02562 * 18 17 16 43 43 H 1.09005 * 109.47656 * 60.00320 * 21 19 18 44 44 H 1.09000 * 109.47265 * 299.99628 * 21 19 18 45 45 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 46 46 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 48 48 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 49 49 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6644 -0.1900 2.5267 6 6 2.7031 0.8020 2.9830 7 1 3.5427 1.0365 2.3454 8 6 2.5816 1.4102 4.2143 9 7 1.5595 1.1242 4.9910 10 14 3.8694 2.6393 4.7802 11 1 3.4766 4.0035 4.3447 12 1 3.9716 2.6027 6.2612 13 1 5.1837 2.2887 4.1845 14 6 2.7933 -1.7863 1.0725 15 8 3.1972 -2.3582 2.0627 16 6 3.1569 -2.3014 -0.2962 17 6 4.0362 -3.5456 -0.1559 18 7 4.3892 -4.0468 -1.4865 19 6 5.1641 -5.1426 -1.6101 20 8 5.5695 -5.7135 -0.6199 21 6 5.5277 -5.6577 -2.9788 22 6 6.3937 -6.8834 -2.8406 23 6 5.8131 -8.1363 -2.7769 24 6 6.6075 -9.2605 -2.6506 25 6 7.9824 -9.1319 -2.5886 26 6 8.5627 -7.8786 -2.6469 27 6 7.7686 -6.7547 -2.7779 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8901 34 1 1.6766 1.9563 0.8900 35 1 0.6904 0.2974 2.4844 36 1 1.6239 -1.0225 3.2292 37 1 1.4737 1.5524 5.8572 38 1 3.7017 -1.5309 -0.8417 39 1 2.2484 -2.5586 -0.8408 40 1 3.4912 -4.3161 0.3894 41 1 4.9448 -3.2888 0.3889 42 1 4.0659 -3.5895 -2.2784 43 1 6.0725 -4.8871 -3.5243 44 1 4.6192 -5.9149 -3.5234 45 1 4.7388 -8.2368 -2.8258 46 1 6.1539 -10.2393 -2.6005 47 1 8.6030 -10.0103 -2.4904 48 1 9.6367 -7.7778 -2.5941 49 1 8.2222 -5.7759 -2.8284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523281854.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:32 Heat of formation + Delta-G solvation = -58.989683 kcal Electronic energy + Delta-G solvation = -27687.077475 eV Core-core repulsion = 23806.636241 eV Total energy + Delta-G solvation = -3880.441235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.19599 -39.35615 -38.74244 -36.12926 -35.06502 -33.15229 -32.85503 -31.08265 -31.00567 -30.80602 -28.10227 -27.11122 -26.73944 -24.09117 -22.78821 -22.43237 -21.75136 -21.21495 -20.48851 -18.07947 -17.16488 -17.08041 -16.75045 -16.49266 -16.02262 -15.69480 -15.38108 -15.07662 -14.99407 -14.52191 -14.22758 -13.82065 -13.63603 -13.52744 -13.47350 -13.31266 -12.95804 -12.62575 -12.54829 -12.35103 -12.12906 -11.88953 -11.69526 -11.60493 -11.35441 -11.32606 -11.20604 -11.14366 -10.94064 -10.87065 -10.56162 -10.39898 -10.03204 -10.01315 -9.55372 -9.11188 -9.08257 -8.97394 -8.89326 -8.41971 -7.67894 -6.03351 -4.06667 1.12614 1.23169 2.57566 3.01303 3.29456 3.35094 3.37725 3.42797 3.64244 3.95068 4.37555 4.45180 4.58341 4.72137 4.80130 4.90033 4.96780 4.98811 5.05686 5.15073 5.17910 5.20842 5.30728 5.31171 5.43183 5.51532 5.53453 5.61019 5.77993 5.83628 5.96193 5.99957 6.10589 6.13024 6.21549 6.24879 6.31739 6.32675 6.37153 6.37502 6.55642 6.80230 6.92407 7.08745 7.39704 7.46874 7.54893 7.93168 8.16402 8.25092 8.40992 8.90643 9.07048 9.57419 11.04805 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.002087 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.794742 B =13412.808479 C =14198.818887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.133 3.867 3 C -0.158 4.158 4 N -0.592 5.592 5 C 0.246 3.754 6 C -0.519 4.519 7 H 0.058 0.942 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.508 3.492 15 O -0.538 6.538 16 C -0.153 4.153 17 C 0.135 3.865 18 N -0.733 5.733 19 C 0.510 3.490 20 O -0.526 6.526 21 C -0.103 4.103 22 C -0.066 4.066 23 C -0.105 4.105 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.105 4.105 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.398 0.602 43 H 0.103 0.897 44 H 0.102 0.898 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.860 -12.237 -23.101 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.028 3.972 3 C -0.216 4.216 4 N -0.324 5.324 5 C 0.127 3.873 6 C -0.558 4.558 7 H 0.076 0.924 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.293 3.707 15 O -0.415 6.415 16 C -0.194 4.194 17 C 0.011 3.989 18 N -0.385 5.385 19 C 0.296 3.704 20 O -0.401 6.401 21 C -0.142 4.142 22 C -0.066 4.066 23 C -0.123 4.123 24 C -0.138 4.138 25 C -0.140 4.140 26 C -0.138 4.138 27 C -0.123 4.123 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.232 0.768 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.271 -12.899 -21.624 25.725 hybrid contribution 0.440 1.146 0.025 1.227 sum 5.711 -11.753 -21.599 25.245 Atomic orbital electron populations 1.22162 0.95587 1.01782 1.02502 1.21000 0.94114 0.94155 0.87888 1.22147 1.01346 0.95708 1.02352 1.48329 1.49036 1.26312 1.08729 1.19251 0.95899 0.95020 0.77178 1.21419 1.08897 1.23359 1.02076 0.92410 1.24930 0.95767 0.97170 0.96359 1.69928 1.29581 1.43218 1.10689 0.86546 0.82038 0.81174 0.77963 1.20726 1.21155 1.19950 1.19998 0.79519 0.81211 0.89952 1.90714 1.53159 1.58035 1.39593 1.21859 1.01119 0.98360 0.98044 1.21073 0.99721 0.95059 0.83001 1.46050 1.53051 1.29808 1.09625 1.20492 0.78398 0.80259 0.91299 1.90772 1.52517 1.57213 1.39612 1.20690 1.01091 0.96929 0.95533 1.19280 0.93629 0.93585 1.00134 1.20986 0.99695 0.92072 0.99596 1.21103 0.93913 0.98493 1.00297 1.21144 0.95065 0.97454 1.00347 1.21108 0.99796 0.92634 1.00240 1.20994 0.93064 0.98747 0.99525 0.91256 0.92287 0.92932 0.90799 0.92755 0.93276 0.90018 0.94761 0.94037 0.92789 0.88915 0.89067 0.90574 0.90463 0.76837 0.87908 0.87932 0.86238 0.86108 0.86221 0.86097 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.17 37.16 0.34 -1.88 16 2 C 0.13 2.00 3.17 -67.93 -0.22 1.79 16 3 C -0.16 -2.44 8.47 37.16 0.31 -2.13 16 4 N -0.59 -11.86 2.39 -167.47 -0.40 -12.26 16 5 C 0.25 6.21 4.59 -5.19 -0.02 6.18 16 6 C -0.52 -14.22 7.83 -34.44 -0.27 -14.49 16 7 H 0.06 1.58 7.63 -52.48 -0.40 1.18 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 10 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.70 7.11 56.52 0.40 -6.29 16 14 C 0.51 10.07 7.67 -10.99 -0.08 9.99 16 15 O -0.54 -13.38 15.56 5.56 0.09 -13.29 16 16 C -0.15 -2.01 4.12 -27.89 -0.12 -2.13 16 17 C 0.13 1.91 4.96 -4.04 -0.02 1.89 16 18 N -0.73 -7.55 5.56 -60.30 -0.33 -7.89 16 19 C 0.51 6.11 7.82 -10.99 -0.09 6.02 16 20 O -0.53 -9.07 16.03 5.56 0.09 -8.98 16 21 C -0.10 -0.80 5.83 -29.03 -0.17 -0.97 16 22 C -0.07 -0.66 4.37 -104.62 -0.46 -1.12 16 23 C -0.11 -1.03 9.70 -39.58 -0.38 -1.42 16 24 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 25 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 26 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 27 C -0.11 -1.05 9.70 -39.58 -0.38 -1.43 16 28 H 0.07 1.11 6.66 -51.93 -0.35 0.76 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.87 5.77 -51.93 -0.30 0.57 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.53 6.92 -51.93 -0.36 1.17 16 35 H 0.03 0.88 6.43 -51.93 -0.33 0.54 16 36 H 0.04 1.21 7.42 -51.93 -0.39 0.83 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.09 1.03 7.79 -51.93 -0.40 0.62 16 39 H 0.09 0.94 7.79 -51.93 -0.40 0.54 16 40 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 41 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 42 H 0.40 2.53 8.47 -40.82 -0.35 2.18 16 43 H 0.10 0.56 8.09 -51.93 -0.42 0.14 16 44 H 0.10 0.54 8.08 -51.93 -0.42 0.12 16 45 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 46 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 48 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 49 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 LS Contribution 405.12 15.07 6.11 6.11 Total: -1.00 -36.47 405.12 -9.48 -45.95 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.90 Total: 1.83 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: -2.84 Total: -2.60 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.00 Total: -45.76 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.18 Total: -22.27 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.47 -9.48 -45.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281854.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.042 kcal (2) G-P(sol) polarization free energy of solvation -36.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds