Wall clock time and date at job start Tue Mar 31 2020 16:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46483 * 2 1 4 4 N 1.46494 * 109.47305 * 119.99952 * 2 1 3 5 5 C 1.46500 * 119.99839 * 300.00226 * 4 2 1 6 6 C 1.50705 * 109.47370 * 270.00052 * 5 4 2 7 7 H 1.08004 * 119.99711 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00287 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00076 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00164 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46908 * 89.99996 * 10 8 6 12 12 H 1.48505 * 109.47279 * 209.99682 * 10 8 6 13 13 H 1.48493 * 109.47232 * 330.00199 * 10 8 6 14 14 C 1.34773 * 120.00247 * 120.00454 * 4 2 1 15 15 O 1.21274 * 120.00284 * 180.02562 * 14 4 2 16 16 C 1.50698 * 119.99781 * 359.97438 * 14 4 2 17 17 C 1.52997 * 109.47405 * 180.02562 * 16 14 4 18 18 N 1.46500 * 109.47538 * 179.97438 * 17 16 14 19 19 C 1.34773 * 119.99913 * 179.97438 * 18 17 16 20 20 O 1.21281 * 120.00637 * 359.97438 * 19 18 17 21 21 C 1.50698 * 119.99781 * 180.02562 * 19 18 17 22 22 C 1.50707 * 109.47247 * 180.02562 * 21 19 18 23 23 C 1.38238 * 119.99792 * 89.99994 * 22 21 19 24 24 C 1.38235 * 119.99712 * 179.97438 * 23 22 21 25 25 C 1.38234 * 120.00220 * 359.97124 * 24 23 22 26 26 C 1.38233 * 120.00037 * 0.28719 * 25 24 23 27 27 C 1.38234 * 120.00179 * 269.97930 * 22 21 19 28 28 H 1.08993 * 109.47174 * 299.99659 * 1 2 3 29 29 H 1.08998 * 109.47357 * 60.00026 * 1 2 3 30 30 H 1.09007 * 109.46554 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47045 * 240.00588 * 2 1 3 32 32 H 1.09006 * 109.46740 * 179.97438 * 3 2 1 33 33 H 1.09005 * 109.47137 * 299.99693 * 3 2 1 34 34 H 1.08993 * 109.47137 * 60.00319 * 3 2 1 35 35 H 1.09002 * 109.47634 * 29.99840 * 5 4 2 36 36 H 1.09001 * 109.47477 * 150.00410 * 5 4 2 37 37 H 0.97006 * 120.00562 * 180.02562 * 9 8 6 38 38 H 1.08997 * 109.47815 * 60.00046 * 16 14 4 39 39 H 1.09004 * 109.47012 * 300.00078 * 16 14 4 40 40 H 1.09000 * 109.47395 * 59.99115 * 17 16 14 41 41 H 1.09004 * 109.46800 * 299.99841 * 17 16 14 42 42 H 0.96998 * 119.99656 * 0.02562 * 18 17 16 43 43 H 1.09005 * 109.47656 * 60.00320 * 21 19 18 44 44 H 1.09000 * 109.47265 * 299.99628 * 21 19 18 45 45 H 1.08005 * 120.00068 * 359.97438 * 23 22 21 46 46 H 1.07999 * 119.99770 * 179.97438 * 24 23 22 47 47 H 1.08002 * 119.99744 * 180.02562 * 25 24 23 48 48 H 1.07998 * 120.00395 * 179.72811 * 26 25 24 49 49 H 1.07999 * 119.99968 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6644 -0.1900 2.5267 6 6 2.7031 0.8020 2.9830 7 1 3.5427 1.0365 2.3454 8 6 2.5816 1.4102 4.2143 9 7 1.5595 1.1242 4.9910 10 14 3.8694 2.6393 4.7802 11 1 3.4766 4.0035 4.3447 12 1 3.9716 2.6027 6.2612 13 1 5.1837 2.2887 4.1845 14 6 2.7933 -1.7863 1.0725 15 8 3.1972 -2.3582 2.0627 16 6 3.1569 -2.3014 -0.2962 17 6 4.0362 -3.5456 -0.1559 18 7 4.3892 -4.0468 -1.4865 19 6 5.1641 -5.1426 -1.6101 20 8 5.5695 -5.7135 -0.6199 21 6 5.5277 -5.6577 -2.9788 22 6 6.3937 -6.8834 -2.8406 23 6 5.8131 -8.1363 -2.7769 24 6 6.6075 -9.2605 -2.6506 25 6 7.9824 -9.1319 -2.5886 26 6 8.5627 -7.8786 -2.6469 27 6 7.7686 -6.7547 -2.7779 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 3.1299 1.4426 0.0005 33 1 1.6765 1.9564 -0.8901 34 1 1.6766 1.9563 0.8900 35 1 0.6904 0.2974 2.4844 36 1 1.6239 -1.0225 3.2292 37 1 1.4737 1.5524 5.8572 38 1 3.7017 -1.5309 -0.8417 39 1 2.2484 -2.5586 -0.8408 40 1 3.4912 -4.3161 0.3894 41 1 4.9448 -3.2888 0.3889 42 1 4.0659 -3.5895 -2.2784 43 1 6.0725 -4.8871 -3.5243 44 1 4.6192 -5.9149 -3.5234 45 1 4.7388 -8.2368 -2.8258 46 1 6.1539 -10.2393 -2.6005 47 1 8.6030 -10.0103 -2.4904 48 1 9.6367 -7.7778 -2.5941 49 1 8.2222 -5.7759 -2.8284 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523281854.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:31 Heat of formation + Delta-G solvation = -83.581767 kcal Electronic energy + Delta-G solvation = -27688.143868 eV Core-core repulsion = 23806.636241 eV Total energy + Delta-G solvation = -3881.507627 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.17558 -40.73665 -39.58271 -37.63626 -36.22010 -34.92702 -33.86916 -32.39999 -32.12320 -31.74102 -29.49476 -28.36197 -27.91870 -25.64257 -23.98910 -23.45588 -22.66409 -22.50339 -21.38659 -19.49400 -18.60617 -18.33612 -18.03794 -17.62975 -17.05721 -16.86709 -16.61203 -16.38579 -16.04828 -15.78154 -15.58731 -14.86505 -14.79895 -14.78730 -14.47195 -14.25399 -14.16045 -13.86842 -13.79841 -13.37338 -13.34252 -13.29950 -12.95324 -12.91075 -12.75690 -12.74953 -12.45762 -12.42440 -12.18681 -12.08513 -11.97950 -11.84055 -11.61339 -11.49429 -11.05444 -10.61349 -10.57340 -10.13689 -9.77459 -9.60645 -9.40868 -8.19533 -6.31072 0.43868 0.54630 1.34328 1.37849 1.47164 1.67319 1.83801 2.01800 2.36615 2.56776 2.96869 3.10371 3.63251 3.71848 3.86306 3.98244 4.06564 4.07690 4.12504 4.19323 4.29936 4.34160 4.43905 4.44808 4.50793 4.63022 4.67956 4.80677 4.85049 4.88386 4.91564 4.96888 5.05345 5.09915 5.15514 5.16428 5.18772 5.25747 5.40644 5.47450 5.58465 5.61856 5.64928 5.66523 5.68928 5.90468 6.11695 6.15722 6.60525 6.74995 6.85651 7.31439 7.33366 7.51725 8.87693 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017542 B = 0.002087 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1595.794742 B =13412.808479 C =14198.818887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 C -0.154 4.154 4 N -0.596 5.596 5 C 0.263 3.737 6 C -0.523 4.523 7 H 0.055 0.945 8 C 0.003 3.997 9 N -0.931 5.931 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.493 3.507 15 O -0.603 6.603 16 C -0.131 4.131 17 C 0.145 3.855 18 N -0.711 5.711 19 C 0.507 3.493 20 O -0.588 6.588 21 C -0.091 4.091 22 C -0.084 4.084 23 C -0.123 4.123 24 C -0.133 4.133 25 C -0.133 4.133 26 C -0.134 4.134 27 C -0.124 4.124 28 H 0.033 0.967 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.126 0.874 32 H 0.044 0.956 33 H 0.091 0.909 34 H 0.039 0.961 35 H 0.026 0.974 36 H -0.012 1.012 37 H 0.264 0.736 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.423 0.577 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.131 0.869 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.136 0.864 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.067 -11.376 -27.303 30.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.022 3.978 3 C -0.212 4.212 4 N -0.327 5.327 5 C 0.141 3.859 6 C -0.562 4.562 7 H 0.073 0.927 8 C -0.195 4.195 9 N -0.571 5.571 10 Si 0.786 3.214 11 H -0.188 1.188 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.282 3.718 15 O -0.485 6.485 16 C -0.170 4.170 17 C 0.020 3.980 18 N -0.365 5.365 19 C 0.295 3.705 20 O -0.467 6.467 21 C -0.130 4.130 22 C -0.084 4.084 23 C -0.141 4.141 24 C -0.151 4.151 25 C -0.151 4.151 26 C -0.152 4.152 27 C -0.142 4.142 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.077 0.923 31 H 0.144 0.856 32 H 0.064 0.936 33 H 0.110 0.890 34 H 0.058 0.942 35 H 0.044 0.956 36 H 0.007 0.993 37 H 0.073 0.927 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.262 0.738 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.149 0.851 46 H 0.155 0.845 47 H 0.156 0.844 48 H 0.154 0.846 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.444 -11.991 -25.931 29.083 hybrid contribution 0.357 0.827 1.315 1.594 sum 5.801 -11.163 -24.616 27.645 Atomic orbital electron populations 1.22136 0.94467 1.02275 1.02696 1.21491 0.95101 0.94002 0.87210 1.22098 1.00720 0.95983 1.02363 1.48373 1.49093 1.26821 1.08379 1.18635 0.95258 0.92510 0.79487 1.21663 1.08954 1.23357 1.02182 0.92702 1.25819 0.97833 0.99236 0.96634 1.70055 1.31421 1.44552 1.11104 0.85517 0.79181 0.79487 0.77256 1.18774 1.21121 1.19915 1.21227 0.78142 0.80325 0.92091 1.90687 1.55426 1.59863 1.42547 1.21768 1.03153 0.98256 0.93847 1.20661 0.97955 0.94885 0.84528 1.45760 1.52394 1.29429 1.08929 1.21312 0.77260 0.79676 0.92280 1.90757 1.54842 1.59081 1.42025 1.20741 1.02563 0.96738 0.92954 1.19606 0.94075 0.94550 1.00188 1.21291 1.00531 0.92444 0.99816 1.21431 0.94267 0.99339 1.00060 1.21464 0.95441 0.98170 1.00011 1.21426 1.00814 0.92817 1.00110 1.21287 0.93553 0.99467 0.99889 0.94778 0.88307 0.92331 0.85598 0.93647 0.89004 0.94216 0.95564 0.99349 0.92700 0.85218 0.84538 0.93583 0.94096 0.73817 0.84797 0.84636 0.85108 0.84465 0.84370 0.84577 0.85287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 9.17 71.98 0.66 -3.24 16 2 C 0.12 3.36 3.17 44.99 0.14 3.51 16 3 C -0.15 -4.39 8.47 71.98 0.61 -3.78 16 4 N -0.60 -23.85 2.39 -802.15 -1.91 -25.77 16 5 C 0.26 13.96 4.59 85.63 0.39 14.36 16 6 C -0.52 -29.68 7.83 25.60 0.20 -29.48 16 7 H 0.05 3.07 7.63 -2.91 -0.02 3.05 16 8 C 0.00 0.17 5.46 84.65 0.46 0.64 16 9 N -0.93 -56.95 13.29 21.44 0.28 -56.67 16 10 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 11 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 12 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 13 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 14 C 0.49 19.60 7.67 87.66 0.67 20.27 16 15 O -0.60 -31.75 15.56 -3.01 -0.05 -31.79 16 16 C -0.13 -3.01 4.12 29.85 0.12 -2.89 16 17 C 0.14 4.01 4.96 86.38 0.43 4.44 16 18 N -0.71 -12.66 5.56 -463.07 -2.57 -15.23 16 19 C 0.51 11.31 7.82 87.66 0.69 12.00 16 20 O -0.59 -20.61 16.03 -3.03 -0.05 -20.66 16 21 C -0.09 -1.14 5.83 29.10 0.17 -0.97 16 22 C -0.08 -1.56 4.37 -19.86 -0.09 -1.65 16 23 C -0.12 -2.28 9.70 22.27 0.22 -2.07 16 24 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 25 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 26 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 27 C -0.12 -2.35 9.70 22.27 0.22 -2.14 16 28 H 0.03 1.08 6.66 -2.39 -0.02 1.06 16 29 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.13 2.16 5.77 -2.39 -0.01 2.14 16 32 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 34 H 0.04 1.46 6.92 -2.39 -0.02 1.45 16 35 H 0.03 1.43 6.43 -2.39 -0.02 1.41 16 36 H -0.01 -0.73 7.42 -2.39 -0.02 -0.75 16 37 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 38 H 0.13 2.15 7.79 -2.39 -0.02 2.13 16 39 H 0.14 2.02 7.79 -2.38 -0.02 2.00 16 40 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 41 H 0.04 1.43 8.10 -2.38 -0.02 1.42 16 42 H 0.42 3.21 8.47 -92.71 -0.79 2.42 16 43 H 0.13 0.87 8.09 -2.38 -0.02 0.85 16 44 H 0.14 0.83 8.08 -2.39 -0.02 0.81 16 45 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 46 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 47 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 48 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 49 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -89.75 405.12 3.45 -86.30 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.15 Total: 13.64 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.56 Total: 2.65 kcal Atomic # 7 Polarization: -93.46 SS G_CDS: -4.20 Total: -97.66 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.10 Total: -52.45 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -89.75 3.45 -86.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281854.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.717 kcal (2) G-P(sol) polarization free energy of solvation -89.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds