Wall clock time and date at job start Tue Mar 31 2020 16:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47293 * 2 1 4 4 N 1.46498 * 109.47259 * 179.97438 * 3 2 1 5 5 C 1.36915 * 119.99821 * 263.46268 * 4 3 2 6 6 H 1.07998 * 119.99904 * 133.75283 * 5 4 3 7 7 C 1.39021 * 119.99661 * 313.75098 * 5 4 3 8 8 N 1.31389 * 119.99877 * 344.74690 * 7 5 4 9 9 Si 1.86797 * 119.99801 * 164.74784 * 7 5 4 10 10 H 1.48504 * 109.47051 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46929 * 120.00002 * 9 7 5 12 12 H 1.48497 * 109.47103 * 240.00070 * 9 7 5 13 13 C 1.34776 * 120.00128 * 83.45903 * 4 3 2 14 14 O 1.21629 * 119.99538 * 359.64130 * 13 4 3 15 15 C 1.47413 * 119.99845 * 179.91710 * 13 4 3 16 16 C 1.39854 * 120.07409 * 327.32476 * 15 13 4 17 17 C 1.37592 * 119.92385 * 179.72216 * 16 15 13 18 18 C 1.39234 * 120.07312 * 0.53494 * 17 16 15 19 19 N 1.39060 * 119.92515 * 179.74191 * 18 17 16 20 20 C 1.46851 * 110.99934 * 124.22809 * 19 18 17 21 21 C 1.53038 * 109.52010 * 174.16291 * 20 19 18 22 22 C 1.53111 * 109.28101 * 59.18113 * 21 20 19 23 23 O 1.42897 * 109.52390 * 182.43797 * 22 21 20 24 24 C 1.53125 * 109.16188 * 302.34338 * 22 21 20 25 25 C 1.46854 * 110.99975 * 0.02562 * 19 18 17 26 26 C 1.39232 * 120.15045 * 359.76252 * 18 17 16 27 27 C 1.37589 * 120.07244 * 359.95644 * 26 18 17 28 28 H 1.08997 * 109.46628 * 60.00119 * 1 2 3 29 29 H 1.09004 * 109.47071 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46928 * 300.00272 * 1 2 3 31 31 H 1.08997 * 109.47648 * 239.99636 * 2 1 3 32 32 H 1.09002 * 109.46666 * 119.99401 * 2 1 3 33 33 H 1.09007 * 109.46747 * 59.99735 * 3 2 1 34 34 H 1.09001 * 109.47090 * 300.00045 * 3 2 1 35 35 H 0.97004 * 119.99177 * 180.02562 * 8 7 5 36 36 H 1.08009 * 120.03857 * 359.97438 * 16 15 13 37 37 H 1.08003 * 119.96479 * 180.25085 * 17 16 15 38 38 H 1.08997 * 109.46326 * 294.17742 * 20 19 18 39 39 H 1.08997 * 109.46219 * 54.14331 * 20 19 18 40 40 H 1.08998 * 109.50002 * 299.23347 * 21 20 19 41 41 H 1.09001 * 109.53146 * 179.14500 * 21 20 19 42 42 H 1.09004 * 109.57513 * 62.27858 * 22 21 20 43 43 H 0.96696 * 114.00046 * 299.68626 * 23 22 21 44 44 H 1.09000 * 109.50164 * 297.71331 * 24 22 21 45 45 H 1.08997 * 109.53739 * 177.61397 * 24 22 21 46 46 H 1.09006 * 109.45667 * 305.85421 * 25 19 18 47 47 H 1.08994 * 109.46535 * 65.83077 * 25 19 18 48 48 H 1.08003 * 119.96273 * 179.97438 * 26 18 17 49 49 H 1.08006 * 120.03632 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.1891 1.5777 1.1789 6 1 5.0191 0.9229 1.3996 7 6 3.8152 2.5578 2.0912 8 7 3.0220 3.5359 1.7163 9 14 4.4404 2.4841 3.8499 10 1 5.3109 1.2925 4.0162 11 1 5.2189 3.7124 4.1503 12 1 3.2878 2.3883 4.7813 13 6 4.1795 1.3094 -1.1587 14 8 3.5717 1.1827 -2.2046 15 6 5.6536 1.3112 -1.1582 16 6 6.3532 2.0781 -0.2209 17 6 7.7291 2.0730 -0.2196 18 6 8.4249 1.3143 -1.1571 19 7 9.8155 1.3157 -1.1563 20 6 10.3431 -0.0500 -1.0420 21 6 11.8660 -0.0240 -1.1905 22 6 12.4652 0.8675 -0.0994 23 8 13.8823 0.9411 -0.2676 24 6 11.8632 2.2711 -0.2104 25 6 10.3404 2.1785 -0.0902 26 6 7.7316 0.5546 -2.0955 27 6 6.3557 0.5506 -2.0987 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8935 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 2.7615 4.2199 2.3528 36 1 5.8140 2.6704 0.5036 37 1 8.2700 2.6618 0.5065 38 1 10.0802 -0.4605 -0.0671 39 1 9.9122 -0.6725 -1.8262 40 1 12.1293 0.3735 -2.1707 41 1 12.2592 -1.0357 -1.0905 42 1 12.2359 0.4493 0.8807 43 1 14.3302 0.0861 -0.2091 44 1 12.1265 2.7048 -1.1751 45 1 12.2538 2.8996 0.5899 46 1 9.9075 3.1746 -0.1831 47 1 10.0776 1.7575 0.8802 48 1 8.2744 -0.0325 -2.8215 49 1 5.8185 -0.0386 -2.8272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563941500.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:25 Heat of formation + Delta-G solvation = -54.192038 kcal Electronic energy + Delta-G solvation = -29080.221318 eV Core-core repulsion = 25199.988125 eV Total energy + Delta-G solvation = -3880.233193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.34603 -38.98044 -37.72086 -36.04644 -35.06369 -33.06047 -32.31918 -31.62909 -31.26678 -30.08804 -28.58830 -25.90908 -24.95734 -24.09532 -23.82727 -21.74281 -21.31695 -20.71138 -19.96964 -19.19527 -17.88517 -17.46969 -16.94124 -16.01265 -15.40557 -15.07334 -14.81070 -14.72770 -14.71880 -14.30143 -14.03123 -13.91502 -13.74226 -13.46546 -13.16323 -12.98607 -12.78405 -12.51638 -12.23013 -12.18875 -11.91668 -11.66071 -11.54162 -11.42121 -11.37514 -11.27926 -11.19166 -11.05744 -10.77375 -10.75209 -10.37313 -10.36216 -10.32355 -10.08074 -9.76297 -9.38164 -9.09338 -8.50364 -8.38031 -7.48707 -7.40357 -6.45606 -4.20197 1.63350 2.03193 3.03651 3.14880 3.17869 3.62465 3.84863 3.94916 4.02990 4.47158 4.51401 4.58671 4.74544 4.83283 4.93286 4.98582 5.09979 5.21100 5.30302 5.38715 5.45100 5.53677 5.56261 5.68217 5.74272 5.76049 5.79485 5.87821 5.92354 5.95776 6.03822 6.12531 6.14373 6.21346 6.43761 6.51638 6.60329 6.64569 6.68400 6.78573 6.88870 7.09662 7.19058 7.19475 7.28358 7.34101 7.34785 7.37400 7.68175 7.95416 8.31203 8.97689 9.45597 9.90312 10.56636 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014914 B = 0.003232 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.011231 B = 8660.226610 C = 9951.572648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.127 3.873 4 N -0.433 5.433 5 C -0.339 4.339 6 H 0.088 0.912 7 C 0.046 3.954 8 N -0.856 5.856 9 Si 0.907 3.093 10 H -0.266 1.266 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.515 3.485 14 O -0.602 6.602 15 C -0.118 4.118 16 C -0.037 4.037 17 C -0.193 4.193 18 C 0.110 3.890 19 N -0.488 5.488 20 C 0.060 3.940 21 C -0.150 4.150 22 C 0.102 3.898 23 O -0.567 6.567 24 C -0.111 4.111 25 C 0.053 3.947 26 C -0.160 4.160 27 C -0.058 4.058 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.271 0.729 36 H 0.163 0.837 37 H 0.122 0.878 38 H 0.044 0.956 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.376 0.624 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.048 0.952 48 H 0.118 0.882 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.682 -5.755 0.142 14.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.175 4.175 3 C 0.003 3.997 4 N -0.150 5.150 5 C -0.467 4.467 6 H 0.106 0.894 7 C -0.161 4.161 8 N -0.491 5.491 9 Si 0.733 3.267 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.305 3.695 14 O -0.489 6.489 15 C -0.122 4.122 16 C -0.056 4.056 17 C -0.213 4.213 18 C 0.013 3.987 19 N -0.204 5.204 20 C -0.066 4.066 21 C -0.188 4.188 22 C 0.043 3.957 23 O -0.373 6.373 24 C -0.148 4.148 25 C -0.074 4.074 26 C -0.180 4.180 27 C -0.078 4.078 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.180 0.820 37 H 0.140 0.860 38 H 0.062 0.938 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.223 0.777 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.066 0.934 48 H 0.136 0.864 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.344 -4.810 -0.757 14.204 hybrid contribution 0.127 -0.821 1.726 1.916 sum 13.471 -5.631 0.969 14.633 Atomic orbital electron populations 1.21659 0.96552 1.00474 1.01397 1.21863 0.94754 0.99442 1.01429 1.21270 0.81627 0.94188 1.02601 1.43248 1.04521 1.62201 1.04999 1.19390 1.16619 1.15888 0.94802 0.89401 1.25489 0.96790 0.93840 1.00002 1.69937 1.33698 1.10309 1.35121 0.86175 0.79051 0.78615 0.82835 1.19024 1.20439 1.20344 1.18369 0.86809 0.80459 0.83860 1.90617 1.70046 1.56241 1.31981 1.19994 0.94293 1.00276 0.97619 1.22150 0.92746 0.95130 0.95556 1.21287 0.95107 1.04946 0.99986 1.18908 0.87018 0.97667 0.95125 1.58889 1.05691 1.10492 1.45306 1.22158 0.94312 0.88555 1.01566 1.22355 0.95235 1.00053 1.01134 1.21898 0.80440 0.96614 0.96740 1.86522 1.19397 1.35500 1.95866 1.21573 0.93804 0.95608 1.03857 1.22244 0.94051 0.98627 0.92527 1.20470 0.93722 1.03637 1.00215 1.21027 0.93057 0.96923 0.96750 0.93082 0.93608 0.93034 0.92646 0.92394 0.89074 0.92855 0.91893 0.82026 0.86034 0.93797 0.89570 0.90052 0.91088 0.92859 0.77688 0.90191 0.90532 0.88971 0.93362 0.86389 0.85861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 9.91 37.16 0.37 -2.00 16 2 C -0.14 -2.76 6.21 -26.73 -0.17 -2.92 16 3 C 0.13 2.98 4.83 -4.04 -0.02 2.96 16 4 N -0.43 -10.76 2.46 -116.03 -0.29 -11.05 16 5 C -0.34 -8.20 5.90 -14.99 -0.09 -8.29 16 6 H 0.09 2.10 6.90 -52.49 -0.36 1.74 16 7 C 0.05 1.10 4.66 -17.45 -0.08 1.02 16 8 N -0.86 -21.68 11.85 55.50 0.66 -21.02 16 9 Si 0.91 18.50 29.58 -169.99 -5.03 13.47 16 10 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 11 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 12 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 13 C 0.52 12.94 7.33 -12.53 -0.09 12.85 16 14 O -0.60 -16.37 16.45 5.25 0.09 -16.28 16 15 C -0.12 -2.59 5.49 -104.95 -0.58 -3.16 16 16 C -0.04 -0.76 7.93 -39.21 -0.31 -1.07 16 17 C -0.19 -3.29 8.79 -39.45 -0.35 -3.64 16 18 C 0.11 1.74 5.64 -83.84 -0.47 1.27 16 19 N -0.49 -6.36 4.68 -171.14 -0.80 -7.16 16 20 C 0.06 0.65 5.25 -3.83 -0.02 0.63 16 21 C -0.15 -1.31 5.72 -26.65 -0.15 -1.46 16 22 C 0.10 0.94 3.54 -26.61 -0.09 0.84 16 23 O -0.57 -5.19 13.32 -35.23 -0.47 -5.66 16 24 C -0.11 -1.12 5.75 -26.65 -0.15 -1.28 16 25 C 0.05 0.60 4.14 -3.83 -0.02 0.59 16 26 C -0.16 -2.60 9.13 -39.45 -0.36 -2.96 16 27 C -0.06 -1.10 9.59 -39.21 -0.38 -1.48 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.09 2.23 6.10 -51.92 -0.32 1.92 16 34 H 0.05 1.32 7.63 -51.93 -0.40 0.92 16 35 H 0.27 6.47 8.31 -40.82 -0.34 6.14 16 36 H 0.16 3.61 5.42 -52.48 -0.28 3.33 16 37 H 0.12 1.82 5.77 -52.48 -0.30 1.51 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 0.91 6.68 -51.93 -0.35 0.56 16 40 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.38 1.82 9.09 45.56 0.41 2.23 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.08 6.96 -51.93 -0.36 0.72 16 47 H 0.05 0.55 7.72 -51.93 -0.40 0.15 16 48 H 0.12 1.63 7.13 -52.48 -0.37 1.26 16 49 H 0.12 2.29 7.95 -52.48 -0.42 1.88 16 LS Contribution 384.68 15.07 5.80 5.80 Total: -1.00 -29.43 384.68 -9.94 -39.37 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -6.93 Total: 10.65 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -2.96 Total: -8.11 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: -0.43 Total: -39.24 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.38 Total: -21.94 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.03 Total: 13.47 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.43 -9.94 -39.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563941500.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.825 kcal (2) G-P(sol) polarization free energy of solvation -29.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds