Wall clock time and date at job start Tue Mar 31 2020 16:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47250 * 2 1 4 4 N 1.46497 * 109.47206 * 184.96464 * 3 2 1 5 5 C 1.46504 * 119.99961 * 85.08069 * 4 3 2 6 6 C 1.52997 * 109.47194 * 85.00107 * 5 4 3 7 7 C 1.53000 * 109.47241 * 180.02562 * 6 5 4 8 8 S 1.65602 * 120.00031 * 265.08287 * 4 3 2 9 9 O 1.42105 * 106.40063 * 208.59421 * 8 4 3 10 10 O 1.42100 * 106.40237 * 341.51094 * 8 4 3 11 11 N 1.65603 * 107.21825 * 95.05447 * 8 4 3 12 12 C 1.46917 * 120.62969 * 83.96077 * 11 8 4 13 13 C 1.53630 * 108.54552 * 126.36708 * 12 11 8 14 14 C 1.53038 * 109.24031 * 54.85206 * 13 12 11 15 15 C 1.52998 * 109.44638 * 178.50141 * 14 13 12 16 16 C 1.50700 * 109.47133 * 295.05701 * 15 14 13 17 17 H 1.08008 * 119.99956 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00338 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99720 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47557 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47109 * 120.00152 * 20 18 16 23 23 H 1.48498 * 109.46915 * 239.99363 * 20 18 16 24 24 C 1.53042 * 109.53726 * 298.51432 * 14 13 12 25 25 C 1.46918 * 120.62713 * 264.23396 * 11 8 4 26 26 H 1.08993 * 109.47616 * 59.99527 * 1 2 3 27 27 H 1.09000 * 109.46976 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46945 * 299.99771 * 1 2 3 29 29 H 1.09002 * 109.46945 * 240.00229 * 2 1 3 30 30 H 1.08993 * 109.47616 * 120.00473 * 2 1 3 31 31 H 1.09001 * 109.46979 * 64.96481 * 3 2 1 32 32 H 1.09001 * 109.47145 * 304.96395 * 3 2 1 33 33 H 1.09001 * 109.47140 * 204.99877 * 5 4 3 34 34 H 1.08999 * 109.47024 * 324.99658 * 5 4 3 35 35 H 1.09001 * 109.46890 * 299.99923 * 6 5 4 36 36 H 1.08999 * 109.47501 * 59.99844 * 6 5 4 37 37 H 1.08999 * 109.47335 * 59.99961 * 7 6 5 38 38 H 1.09004 * 109.47252 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.46944 * 299.99680 * 7 6 5 40 40 H 1.09004 * 109.58894 * 246.19909 * 12 11 8 41 41 H 1.08998 * 109.59326 * 6.62223 * 12 11 8 42 42 H 1.08995 * 109.63039 * 294.86276 * 13 12 11 43 43 H 1.09002 * 109.43276 * 174.72134 * 13 12 11 44 44 H 1.09004 * 109.46194 * 58.53296 * 14 13 12 45 45 H 1.08997 * 109.47642 * 55.06008 * 15 14 13 46 46 H 1.09007 * 109.46990 * 175.06412 * 15 14 13 47 47 H 0.97003 * 120.00134 * 180.02562 * 19 18 16 48 48 H 1.08993 * 109.49730 * 301.41002 * 24 14 13 49 49 H 1.09002 * 109.49462 * 181.31474 * 24 14 13 50 50 H 1.09000 * 109.59082 * 353.37611 * 25 11 8 51 51 H 1.09004 * 109.58649 * 113.66121 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4442 -0.1195 5 6 4.1269 1.3728 -1.4418 6 6 4.2231 2.7789 -2.0372 7 6 4.8771 2.7042 -3.4184 8 16 4.4421 1.5269 1.2400 9 8 5.6509 2.1654 0.8523 10 8 3.6046 2.0140 2.2795 11 7 4.8447 -0.0256 1.6525 12 6 5.9868 -0.6967 1.0171 13 6 6.9208 -1.2200 2.1189 14 6 6.1233 -2.1085 3.0762 15 6 7.0570 -2.6624 4.1543 16 6 8.0750 -3.5731 3.5175 17 1 8.0580 -3.7397 2.4505 18 6 9.0281 -4.1935 4.2970 19 7 9.0485 -3.9910 5.5963 20 14 10.2904 -5.3217 3.5076 21 1 10.0532 -5.3820 2.0430 22 1 11.6549 -4.7965 3.7674 23 1 10.1663 -6.6842 4.0852 24 6 5.0151 -1.2844 3.7358 25 6 4.0629 -0.7600 2.6565 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.7511 1.9300 0.9311 32 1 1.6059 1.9814 -0.8422 33 1 5.1267 0.9490 -1.3475 34 1 3.5249 0.7417 -2.0956 35 1 3.2233 3.2027 -2.1315 36 1 4.8251 3.4100 -1.3834 37 1 4.2748 2.0733 -4.0720 38 1 4.9461 3.7060 -3.8424 39 1 5.8769 2.2802 -3.3245 40 1 5.6302 -1.5293 0.4106 41 1 6.5237 0.0128 0.3875 42 1 7.3442 -0.3800 2.6695 43 1 7.7244 -1.8016 1.6670 44 1 5.6796 -2.9346 2.5205 45 1 7.5677 -1.8377 4.6514 46 1 6.4751 -3.2232 4.8858 47 1 9.7193 -4.4272 6.1447 48 1 5.4564 -0.4439 4.2713 49 1 4.4622 -1.9120 4.4349 50 1 3.3299 -0.0921 3.1090 51 1 3.5506 -1.5962 2.1806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566734252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:48 Heat of formation + Delta-G solvation = -110.982912 kcal Electronic energy + Delta-G solvation = -28639.419984 eV Core-core repulsion = 24892.168105 eV Total energy + Delta-G solvation = -3747.251879 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -38.27138 -37.74325 -37.35490 -35.78886 -34.38459 -33.91857 -32.07009 -31.92469 -30.68396 -27.63730 -27.20434 -25.02660 -24.17200 -22.90216 -22.24165 -21.45338 -21.33950 -19.57838 -18.76871 -17.68711 -17.44653 -16.59735 -16.23102 -15.35354 -15.13104 -14.83074 -14.57327 -14.37420 -14.24266 -14.00755 -13.70354 -13.59694 -13.27353 -13.22321 -12.84432 -12.52922 -12.51062 -12.43591 -12.23369 -11.99431 -11.88070 -11.76052 -11.74139 -11.64491 -11.58540 -11.43520 -11.16471 -10.99302 -10.91439 -10.77307 -10.70765 -10.66149 -10.37359 -10.08249 -9.62210 -9.35161 -9.27967 -8.95382 -8.62900 -8.33782 -5.98352 -4.00036 0.56158 2.81856 3.31088 3.38992 3.41838 3.45453 4.27301 4.42402 4.46564 4.66109 4.71356 4.77780 4.86939 4.93417 4.98981 5.10623 5.21015 5.30287 5.36346 5.37248 5.41681 5.43816 5.47067 5.53742 5.56586 5.62609 5.70081 5.75671 5.77012 5.80206 5.88091 5.88691 5.96953 5.99133 6.04394 6.07362 6.17777 6.32566 6.43831 6.52697 6.71075 6.75774 7.03529 7.06285 7.15952 7.69355 7.84673 8.01971 8.44443 9.06744 9.63645 11.13011 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.003146 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.365717 B = 8897.252624 C = 9537.012766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.116 3.884 4 N -1.008 6.008 5 C 0.126 3.874 6 C -0.146 4.146 7 C -0.150 4.150 8 S 2.779 3.221 9 O -0.974 6.974 10 O -0.979 6.979 11 N -1.000 6.000 12 C 0.118 3.882 13 C -0.115 4.115 14 C -0.078 4.078 15 C 0.026 3.974 16 C -0.515 4.515 17 H 0.056 0.944 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.889 3.111 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.127 4.127 25 C 0.121 3.879 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.058 0.942 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.061 0.939 49 H 0.070 0.930 50 H 0.084 0.916 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.264 10.845 -16.102 25.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.186 4.186 3 C -0.010 4.010 4 N -0.846 5.846 5 C 0.000 4.000 6 C -0.185 4.185 7 C -0.208 4.208 8 S 2.789 3.211 9 O -0.957 6.957 10 O -0.963 6.963 11 N -0.841 5.841 12 C -0.006 4.006 13 C -0.154 4.154 14 C -0.097 4.097 15 C -0.011 4.011 16 C -0.553 4.553 17 H 0.075 0.925 18 C -0.145 4.145 19 N -0.535 5.535 20 Si 0.717 3.283 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.212 1.212 24 C -0.166 4.166 25 C -0.004 4.004 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.078 0.922 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.080 0.920 49 H 0.088 0.912 50 H 0.102 0.898 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.916 11.611 -15.501 25.068 hybrid contribution 0.674 -1.095 -0.523 1.388 sum -15.242 10.516 -16.024 24.488 Atomic orbital electron populations 1.21694 0.95073 1.02061 1.01938 1.22006 0.96354 0.97297 1.02958 1.21427 0.78695 0.97087 1.03770 1.58122 1.16030 1.89430 1.21009 1.21291 0.97937 0.97330 0.83400 1.21977 1.01494 0.97713 0.97320 1.21696 1.00995 1.01922 0.96150 1.02095 0.73019 0.73315 0.72693 1.93602 1.45456 1.73236 1.83432 1.93560 1.68943 1.78829 1.54971 1.57982 1.40298 1.33938 1.51916 1.21679 0.86176 0.96912 0.95879 1.21918 0.97640 0.99637 0.96211 1.21145 0.95123 0.95728 0.97655 1.19144 0.93376 0.95643 0.92948 1.21281 1.13302 1.26834 0.93869 0.92545 1.25029 0.97815 0.96884 0.94820 1.69975 1.35284 1.43891 1.04348 0.86588 0.81550 0.80651 0.79500 1.19777 1.21109 1.21151 1.21979 0.97460 1.00223 0.96943 1.21502 0.93617 0.96148 0.89174 0.92706 0.92375 0.92377 0.91441 0.91506 0.89109 0.90333 0.90335 0.90477 0.91749 0.90997 0.92699 0.92481 0.92269 0.91796 0.90287 0.92163 0.89874 0.92401 0.96592 0.96612 0.93131 0.91998 0.91165 0.89775 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.15 -1.14 6.26 -26.73 -0.17 -1.31 16 3 C 0.12 0.99 5.66 -4.04 -0.02 0.97 16 4 N -1.01 -10.39 2.84 -114.38 -0.32 -10.72 16 5 C 0.13 1.10 5.34 -4.04 -0.02 1.08 16 6 C -0.15 -1.25 6.26 -26.73 -0.17 -1.41 16 7 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 8 S 2.78 39.33 6.05 -107.50 -0.65 38.68 16 9 O -0.97 -16.27 15.94 -57.17 -0.91 -17.19 16 10 O -0.98 -15.93 15.06 -57.17 -0.86 -16.79 16 11 N -1.00 -14.01 3.34 -113.28 -0.38 -14.39 16 12 C 0.12 1.69 6.48 -3.49 -0.02 1.67 16 13 C -0.12 -2.08 5.21 -26.38 -0.14 -2.22 16 14 C -0.08 -1.52 2.10 -90.58 -0.19 -1.71 16 15 C 0.03 0.65 4.45 -27.88 -0.12 0.53 16 16 C -0.51 -14.04 8.39 -34.44 -0.29 -14.33 16 17 H 0.06 1.48 7.06 -52.48 -0.37 1.11 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 20 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 C -0.13 -2.13 5.36 -26.61 -0.14 -2.27 16 25 C 0.12 1.66 6.10 -3.72 -0.02 1.64 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 0.59 7.62 -51.93 -0.40 0.19 16 31 H 0.09 0.87 6.88 -51.93 -0.36 0.51 16 32 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 33 H 0.08 0.72 7.75 -51.93 -0.40 0.31 16 34 H 0.08 0.52 8.06 -51.93 -0.42 0.10 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.76 8.01 -51.93 -0.42 0.34 16 37 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.08 1.06 7.07 -51.93 -0.37 0.69 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.08 1.58 6.91 -51.93 -0.36 1.22 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 50 H 0.08 1.10 6.79 -51.93 -0.35 0.75 16 51 H 0.06 0.76 8.02 -51.93 -0.42 0.34 16 LS Contribution 406.92 15.07 6.13 6.13 Total: -1.00 -32.63 406.92 -11.70 -44.32 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -9.75 Total: -3.22 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.67 Total: -17.19 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: 0.03 Total: -51.14 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -1.77 Total: -33.97 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 39.33 SS G_CDS: -0.65 Total: 38.68 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.63 -11.70 -44.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566734252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.658 kcal (2) G-P(sol) polarization free energy of solvation -32.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds