Wall clock time and date at job start Tue Mar 31 2020 16:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47250 * 2 1 4 4 N 1.46497 * 109.47206 * 184.96464 * 3 2 1 5 5 C 1.46504 * 119.99961 * 85.08069 * 4 3 2 6 6 C 1.52997 * 109.47194 * 85.00107 * 5 4 3 7 7 C 1.53000 * 109.47241 * 180.02562 * 6 5 4 8 8 S 1.65602 * 120.00031 * 265.08287 * 4 3 2 9 9 O 1.42105 * 106.40063 * 208.59421 * 8 4 3 10 10 O 1.42100 * 106.40237 * 341.51094 * 8 4 3 11 11 N 1.65603 * 107.21825 * 95.05447 * 8 4 3 12 12 C 1.46917 * 120.62969 * 83.96077 * 11 8 4 13 13 C 1.53630 * 108.54552 * 126.36708 * 12 11 8 14 14 C 1.53038 * 109.24031 * 54.85206 * 13 12 11 15 15 C 1.52998 * 109.44638 * 178.50141 * 14 13 12 16 16 C 1.50700 * 109.47133 * 295.05701 * 15 14 13 17 17 H 1.08008 * 119.99956 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00338 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99720 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00068 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47557 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47109 * 120.00152 * 20 18 16 23 23 H 1.48498 * 109.46915 * 239.99363 * 20 18 16 24 24 C 1.53042 * 109.53726 * 298.51432 * 14 13 12 25 25 C 1.46918 * 120.62713 * 264.23396 * 11 8 4 26 26 H 1.08993 * 109.47616 * 59.99527 * 1 2 3 27 27 H 1.09000 * 109.46976 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46945 * 299.99771 * 1 2 3 29 29 H 1.09002 * 109.46945 * 240.00229 * 2 1 3 30 30 H 1.08993 * 109.47616 * 120.00473 * 2 1 3 31 31 H 1.09001 * 109.46979 * 64.96481 * 3 2 1 32 32 H 1.09001 * 109.47145 * 304.96395 * 3 2 1 33 33 H 1.09001 * 109.47140 * 204.99877 * 5 4 3 34 34 H 1.08999 * 109.47024 * 324.99658 * 5 4 3 35 35 H 1.09001 * 109.46890 * 299.99923 * 6 5 4 36 36 H 1.08999 * 109.47501 * 59.99844 * 6 5 4 37 37 H 1.08999 * 109.47335 * 59.99961 * 7 6 5 38 38 H 1.09004 * 109.47252 * 180.02562 * 7 6 5 39 39 H 1.09001 * 109.46944 * 299.99680 * 7 6 5 40 40 H 1.09004 * 109.58894 * 246.19909 * 12 11 8 41 41 H 1.08998 * 109.59326 * 6.62223 * 12 11 8 42 42 H 1.08995 * 109.63039 * 294.86276 * 13 12 11 43 43 H 1.09002 * 109.43276 * 174.72134 * 13 12 11 44 44 H 1.09004 * 109.46194 * 58.53296 * 14 13 12 45 45 H 1.08997 * 109.47642 * 55.06008 * 15 14 13 46 46 H 1.09007 * 109.46990 * 175.06412 * 15 14 13 47 47 H 0.97003 * 120.00134 * 180.02562 * 19 18 16 48 48 H 1.08993 * 109.49730 * 301.41002 * 24 14 13 49 49 H 1.09002 * 109.49462 * 181.31474 * 24 14 13 50 50 H 1.09000 * 109.59082 * 353.37611 * 25 11 8 51 51 H 1.09004 * 109.58649 * 113.66121 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5001 1.4442 -0.1195 5 6 4.1269 1.3728 -1.4418 6 6 4.2231 2.7789 -2.0372 7 6 4.8771 2.7042 -3.4184 8 16 4.4421 1.5269 1.2400 9 8 5.6509 2.1654 0.8523 10 8 3.6046 2.0140 2.2795 11 7 4.8447 -0.0256 1.6525 12 6 5.9868 -0.6967 1.0171 13 6 6.9208 -1.2200 2.1189 14 6 6.1233 -2.1085 3.0762 15 6 7.0570 -2.6624 4.1543 16 6 8.0750 -3.5731 3.5175 17 1 8.0580 -3.7397 2.4505 18 6 9.0281 -4.1935 4.2970 19 7 9.0485 -3.9910 5.5963 20 14 10.2904 -5.3217 3.5076 21 1 10.0532 -5.3820 2.0430 22 1 11.6549 -4.7965 3.7674 23 1 10.1663 -6.6842 4.0852 24 6 5.0151 -1.2844 3.7358 25 6 4.0629 -0.7600 2.6565 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.7511 1.9300 0.9311 32 1 1.6059 1.9814 -0.8422 33 1 5.1267 0.9490 -1.3475 34 1 3.5249 0.7417 -2.0956 35 1 3.2233 3.2027 -2.1315 36 1 4.8251 3.4100 -1.3834 37 1 4.2748 2.0733 -4.0720 38 1 4.9461 3.7060 -3.8424 39 1 5.8769 2.2802 -3.3245 40 1 5.6302 -1.5293 0.4106 41 1 6.5237 0.0128 0.3875 42 1 7.3442 -0.3800 2.6695 43 1 7.7244 -1.8016 1.6670 44 1 5.6796 -2.9346 2.5205 45 1 7.5677 -1.8377 4.6514 46 1 6.4751 -3.2232 4.8858 47 1 9.7193 -4.4272 6.1447 48 1 5.4564 -0.4439 4.2713 49 1 4.4622 -1.9120 4.4349 50 1 3.3299 -0.0921 3.1090 51 1 3.5506 -1.5962 2.1806 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566734252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:47 Heat of formation + Delta-G solvation = -130.756493 kcal Electronic energy + Delta-G solvation = -28640.277430 eV Core-core repulsion = 24892.168105 eV Total energy + Delta-G solvation = -3748.109326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.62758 -38.54142 -38.46303 -36.99538 -35.69583 -34.98302 -33.77786 -32.71386 -31.96186 -29.47403 -27.80869 -26.02768 -25.61647 -24.22539 -23.00746 -22.84158 -22.07675 -21.02847 -19.80097 -18.79869 -18.56268 -18.37395 -17.48091 -16.53338 -16.32863 -15.83635 -15.44847 -15.40319 -15.30840 -15.14469 -15.07758 -14.81066 -14.55852 -14.25673 -14.00914 -13.74416 -13.57075 -13.40061 -13.34760 -13.12937 -13.05729 -12.96707 -12.87718 -12.63851 -12.56836 -12.50948 -12.32608 -12.27730 -12.18003 -12.06794 -12.00257 -11.72986 -11.58301 -11.40377 -11.29669 -11.02196 -10.81893 -10.51979 -10.07677 -9.88680 -8.15549 -6.24904 -0.52617 1.41175 1.41912 1.54399 1.82623 2.40833 2.43399 3.18113 3.20195 3.64009 3.75964 4.04106 4.05953 4.06369 4.10079 4.20353 4.27481 4.30007 4.40385 4.45357 4.49885 4.52827 4.59231 4.65528 4.73827 4.78919 4.85080 4.86083 4.92302 4.96312 5.00422 5.02767 5.05537 5.20738 5.26947 5.28544 5.30404 5.34577 5.37613 5.40135 5.40962 5.44912 5.51156 5.58800 5.61419 5.79396 5.85043 5.92058 6.30837 6.92405 7.43769 8.96777 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.003146 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.365717 B = 8897.252624 C = 9537.012766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.145 4.145 3 C 0.111 3.889 4 N -0.997 5.997 5 C 0.120 3.880 6 C -0.147 4.147 7 C -0.148 4.148 8 S 2.788 3.212 9 O -1.005 7.005 10 O -1.004 7.004 11 N -1.003 6.003 12 C 0.127 3.873 13 C -0.115 4.115 14 C -0.069 4.069 15 C 0.030 3.970 16 C -0.525 4.525 17 H 0.068 0.932 18 C -0.006 4.006 19 N -0.939 5.939 20 Si 0.961 3.039 21 H -0.256 1.256 22 H -0.284 1.284 23 H -0.281 1.281 24 C -0.127 4.127 25 C 0.127 3.873 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.069 0.931 45 H -0.020 1.020 46 H -0.011 1.011 47 H 0.260 0.740 48 H 0.041 0.959 49 H 0.075 0.925 50 H 0.092 0.908 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.819 10.103 -19.384 28.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.184 4.184 3 C -0.014 4.014 4 N -0.837 5.837 5 C -0.005 4.005 6 C -0.186 4.186 7 C -0.206 4.206 8 S 2.799 3.201 9 O -0.988 6.988 10 O -0.989 6.989 11 N -0.844 5.844 12 C 0.003 3.997 13 C -0.154 4.154 14 C -0.088 4.088 15 C -0.007 4.007 16 C -0.563 4.563 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.580 5.580 20 Si 0.786 3.214 21 H -0.180 1.180 22 H -0.210 1.210 23 H -0.207 1.207 24 C -0.166 4.166 25 C 0.003 3.997 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.087 0.913 45 H -0.002 1.002 46 H 0.007 0.993 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.094 0.906 50 H 0.110 0.890 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.480 10.876 -18.791 27.873 hybrid contribution 1.126 -0.814 0.522 1.484 sum -16.354 10.062 -18.269 26.504 Atomic orbital electron populations 1.21687 0.94158 1.02404 1.02389 1.21992 0.97117 0.96390 1.02920 1.21629 0.77337 0.98139 1.04245 1.57821 1.16501 1.89089 1.20335 1.21535 0.98321 0.97953 0.82708 1.21981 1.01808 0.97234 0.97576 1.21688 1.00848 1.02514 0.95514 1.01577 0.72509 0.73054 0.72974 1.93559 1.47280 1.74045 1.83939 1.93521 1.69339 1.79364 1.56630 1.57942 1.40422 1.33725 1.52274 1.21618 0.85571 0.98074 0.94481 1.21844 0.98170 0.98423 0.96963 1.20984 0.94878 0.96594 0.96317 1.19058 0.93751 0.94025 0.93907 1.21718 1.13501 1.26560 0.94481 0.91404 1.25994 1.00244 0.98735 0.95299 1.70126 1.36422 1.45373 1.06053 0.85449 0.78376 0.78236 0.79295 1.17996 1.21039 1.20727 1.21935 0.97349 0.99279 0.98015 1.21492 0.92732 0.97189 0.88336 0.91485 0.92093 0.92771 0.90449 0.92550 0.90385 0.87862 0.90740 0.87446 0.90556 0.93721 0.90925 0.92204 0.92868 0.88800 0.89324 0.94551 0.90957 0.91255 1.00175 0.99294 0.93101 0.94022 0.90593 0.88988 0.88885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.78 16 2 C -0.15 -1.79 6.26 30.59 0.19 -1.60 16 3 C 0.11 1.61 5.66 86.38 0.49 2.09 16 4 N -1.00 -18.30 2.84 -515.78 -1.47 -19.76 16 5 C 0.12 1.75 5.34 86.38 0.46 2.21 16 6 C -0.15 -2.21 6.26 30.59 0.19 -2.02 16 7 C -0.15 -1.75 9.91 71.98 0.71 -1.03 16 8 S 2.79 76.51 6.05 -56.49 -0.34 76.17 16 9 O -1.00 -33.51 15.94 -128.00 -2.04 -35.55 16 10 O -1.00 -32.33 15.06 -128.00 -1.93 -34.26 16 11 N -1.00 -26.65 3.34 -512.31 -1.71 -28.36 16 12 C 0.13 3.41 6.48 86.51 0.56 3.97 16 13 C -0.11 -4.17 5.21 30.82 0.16 -4.00 16 14 C -0.07 -2.71 2.10 -10.77 -0.02 -2.73 16 15 C 0.03 1.55 4.45 29.85 0.13 1.69 16 16 C -0.52 -29.04 8.39 25.60 0.21 -28.83 16 17 H 0.07 3.52 7.06 -2.91 -0.02 3.50 16 18 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 19 N -0.94 -57.85 13.29 21.45 0.28 -57.56 16 20 Si 0.96 44.10 29.54 68.60 2.03 46.12 16 21 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 22 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 24 C -0.13 -4.27 5.36 30.67 0.16 -4.10 16 25 C 0.13 3.30 6.10 86.36 0.53 3.83 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 30 H 0.06 0.82 7.62 -2.39 -0.02 0.80 16 31 H 0.08 1.36 6.88 -2.39 -0.02 1.34 16 32 H 0.10 1.01 8.11 -2.39 -0.02 0.99 16 33 H 0.07 1.18 7.75 -2.39 -0.02 1.16 16 34 H 0.11 0.97 8.06 -2.39 -0.02 0.95 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.04 0.92 8.01 -2.39 -0.02 0.90 16 37 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 39 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 2.23 7.07 -2.39 -0.02 2.21 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.07 2.74 6.91 -2.39 -0.02 2.73 16 44 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 45 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 46 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 47 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 48 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.09 2.29 6.79 -2.39 -0.02 2.27 16 51 H 0.09 1.92 8.02 -2.39 -0.02 1.90 16 Total: -1.00 -73.04 406.92 0.64 -72.40 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.86 Total: 11.99 kcal Atomic # 6 Polarization: -36.15 SS G_CDS: 4.96 Total: -31.19 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -2.89 Total: -105.68 kcal Atomic # 8 Polarization: -65.84 SS G_CDS: -3.97 Total: -69.81 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 76.51 SS G_CDS: -0.34 Total: 76.17 kcal Total: -73.04 0.64 -72.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566734252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.356 kcal (2) G-P(sol) polarization free energy of solvation -73.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds