Wall clock time and date at job start Tue Mar 31 2020 16:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47244 * 2 1 4 4 N 1.46496 * 109.47019 * 119.99758 * 2 1 3 5 5 C 1.34783 * 120.00164 * 125.53569 * 4 2 1 6 6 O 1.21283 * 120.00344 * 183.24374 * 5 4 2 7 7 C 1.50702 * 119.99553 * 3.24397 * 5 4 2 8 8 N 1.46894 * 109.47206 * 186.69765 * 7 5 4 9 9 C 1.48535 * 111.00256 * 52.59593 * 8 7 5 10 10 C 1.54939 * 103.22856 * 159.72369 * 9 8 7 11 11 C 1.54597 * 102.92055 * 322.58961 * 10 9 8 12 12 O 1.42900 * 110.39278 * 262.99819 * 11 10 9 13 13 C 1.50707 * 110.30884 * 140.87315 * 11 10 9 14 14 H 1.08001 * 119.99790 * 244.28489 * 13 11 10 15 15 C 1.37875 * 119.99618 * 64.27990 * 13 11 10 16 16 N 1.31511 * 120.00679 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99522 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47248 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47409 * 120.00350 * 17 15 13 20 20 H 1.48507 * 109.46990 * 240.00462 * 17 15 13 21 21 C 1.47901 * 111.00671 * 169.99740 * 8 7 5 22 22 C 1.39927 * 120.00353 * 305.53453 * 4 2 1 23 23 C 1.38872 * 120.06649 * 351.63516 * 22 4 2 24 24 C 1.38112 * 119.92835 * 179.79201 * 23 22 4 25 25 C 1.38285 * 120.06971 * 0.48579 * 24 23 22 26 26 C 1.38291 * 120.13961 * 359.74471 * 25 24 23 27 27 C 1.38110 * 120.06741 * 0.02562 * 26 25 24 28 28 H 1.09008 * 109.46779 * 306.05167 * 1 2 3 29 29 H 1.09001 * 109.47074 * 66.04405 * 1 2 3 30 30 H 1.08993 * 109.47032 * 186.04891 * 1 2 3 31 31 H 1.09000 * 109.46832 * 240.00000 * 2 1 3 32 32 H 1.08995 * 109.47361 * 192.80603 * 3 2 1 33 33 H 1.09006 * 109.46486 * 312.80152 * 3 2 1 34 34 H 1.08996 * 109.47477 * 72.79974 * 3 2 1 35 35 H 1.09002 * 109.47474 * 66.69366 * 7 5 4 36 36 H 1.09003 * 109.47067 * 306.69227 * 7 5 4 37 37 H 1.08989 * 110.67099 * 278.16447 * 9 8 7 38 38 H 1.09003 * 110.66153 * 41.29563 * 9 8 7 39 39 H 1.09000 * 110.72547 * 204.23046 * 10 9 8 40 40 H 1.08997 * 110.87383 * 81.01644 * 10 9 8 41 41 H 0.96701 * 113.99744 * 295.76040 * 12 11 10 42 42 H 0.96993 * 120.00358 * 179.97438 * 16 15 13 43 43 H 1.09002 * 109.91110 * 333.51087 * 21 8 7 44 44 H 1.09002 * 109.91733 * 94.59907 * 21 8 7 45 45 H 1.07994 * 120.03745 * 0.02562 * 23 22 4 46 46 H 1.07997 * 119.96662 * 180.23056 * 24 23 22 47 47 H 1.08000 * 119.93469 * 179.76605 * 25 24 23 48 48 H 1.07996 * 119.96426 * 180.02562 * 26 25 24 49 49 H 1.08000 * 120.03032 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8826 -1.7178 1.0757 6 8 3.2413 -2.3273 2.0610 7 6 3.4033 -2.1089 -0.2833 8 7 4.1926 -3.3425 -0.1688 9 6 3.4217 -4.4053 0.5255 10 6 4.1454 -5.7063 0.0961 11 6 4.5208 -5.4230 -1.3766 12 8 3.5507 -5.9944 -2.2565 13 6 5.8906 -5.9722 -1.6821 14 1 6.6953 -5.3012 -1.9442 15 6 6.1164 -7.3312 -1.6269 16 7 5.1365 -8.1484 -1.3081 17 14 7.8145 -8.0119 -2.0049 18 1 8.7345 -6.8932 -2.3328 19 1 8.3292 -8.7445 -0.8202 20 1 7.7298 -8.9390 -3.1619 21 6 4.5197 -3.8884 -1.5039 22 6 1.5876 -0.2837 2.4638 23 6 0.8385 0.8771 2.6047 24 6 0.4111 1.2737 3.8568 25 6 0.7369 0.5216 4.9705 26 6 1.4868 -0.6323 4.8341 27 6 1.9131 -1.0368 3.5842 28 1 -0.3633 0.6048 0.8309 29 1 -0.3633 0.4173 -0.9392 30 1 -0.3633 -1.0219 0.1083 31 1 1.8933 -0.5138 -0.8900 32 1 3.1059 1.4511 -0.2278 33 1 1.5028 2.0178 -0.7541 34 1 1.8747 1.8864 0.9816 35 1 4.0326 -1.3099 -0.6752 36 1 2.5647 -2.2757 -0.9594 37 1 3.4739 -4.2748 1.6063 38 1 2.3854 -4.4121 0.1874 39 1 3.4739 -6.5621 0.1653 40 1 5.0396 -5.8699 0.6975 41 1 3.5064 -6.9597 -2.2195 42 1 5.2953 -9.1044 -1.2697 43 1 3.7664 -3.5763 -2.2273 44 1 5.5031 -3.5381 -1.8176 45 1 0.5872 1.4671 1.7358 46 1 -0.1746 2.1743 3.9666 47 1 0.4048 0.8358 5.9490 48 1 1.7393 -1.2178 5.7057 49 1 2.4991 -1.9378 3.4784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592146350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:14 Heat of formation + Delta-G solvation = -10.528233 kcal Electronic energy + Delta-G solvation = -29656.687269 eV Core-core repulsion = 25778.347480 eV Total energy + Delta-G solvation = -3878.339788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26767 -38.90904 -37.75851 -36.92340 -34.71325 -32.51976 -32.04789 -31.09565 -30.68508 -29.43219 -28.02330 -27.57309 -26.33198 -24.19213 -22.94164 -22.59388 -22.05613 -20.66218 -19.47757 -19.34811 -17.33270 -17.08702 -16.83837 -16.53914 -15.82940 -15.36242 -14.89806 -14.79414 -14.61321 -14.30735 -13.99110 -13.86645 -13.68921 -13.46426 -13.37980 -13.19493 -12.89926 -12.60810 -12.37021 -12.31719 -12.04518 -11.81210 -11.73726 -11.69300 -11.55784 -11.22851 -11.16660 -10.89264 -10.60342 -10.53450 -10.42982 -10.35588 -10.18615 -9.91788 -9.23917 -9.02234 -8.92141 -8.56241 -8.05948 -7.96591 -7.81714 -6.17206 -4.23059 1.24584 1.39967 2.58802 2.59680 3.25287 3.33720 3.38380 3.81727 4.22606 4.35300 4.38838 4.54470 4.68730 4.78596 4.86637 4.90592 5.10001 5.12611 5.22297 5.24164 5.34101 5.37410 5.38271 5.41448 5.51328 5.55506 5.61977 5.74528 5.87727 5.88828 6.01129 6.06840 6.13486 6.22538 6.27932 6.35604 6.35902 6.50669 6.57193 6.69164 6.93191 7.10040 7.14042 7.23732 7.29305 7.52857 7.63157 7.67813 7.86897 8.13101 8.18480 8.78426 9.43431 9.53937 10.90628 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.002816 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.184482 B = 9942.157568 C =10571.014154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.121 3.879 3 C -0.181 4.181 4 N -0.552 5.552 5 C 0.516 3.484 6 O -0.488 6.488 7 C 0.030 3.970 8 N -0.497 5.497 9 C 0.029 3.971 10 C -0.118 4.118 11 C 0.243 3.757 12 O -0.596 6.596 13 C -0.527 4.527 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.899 5.899 17 Si 0.901 3.099 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.284 1.284 21 C 0.054 3.946 22 C 0.163 3.837 23 C -0.177 4.177 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.098 4.098 27 C -0.169 4.169 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.025 0.975 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.384 0.616 42 H 0.266 0.734 43 H 0.036 0.964 44 H 0.082 0.918 45 H 0.140 0.860 46 H 0.120 0.880 47 H 0.116 0.884 48 H 0.122 0.878 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.920 18.993 5.571 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.018 3.982 3 C -0.239 4.239 4 N -0.276 5.276 5 C 0.307 3.693 6 O -0.362 6.362 7 C -0.101 4.101 8 N -0.222 5.222 9 C -0.098 4.098 10 C -0.157 4.157 11 C 0.203 3.797 12 O -0.406 6.406 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.540 5.540 17 Si 0.728 3.272 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.210 1.210 21 C -0.073 4.073 22 C 0.069 3.931 23 C -0.197 4.197 24 C -0.122 4.122 25 C -0.172 4.172 26 C -0.116 4.116 27 C -0.188 4.188 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.236 0.764 42 H 0.076 0.924 43 H 0.055 0.945 44 H 0.100 0.900 45 H 0.157 0.843 46 H 0.138 0.862 47 H 0.134 0.866 48 H 0.140 0.860 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -10.338 19.194 6.152 22.653 hybrid contribution 0.124 -1.036 -0.525 1.168 sum -10.214 18.159 5.627 21.581 Atomic orbital electron populations 1.22453 0.94065 1.03607 1.03412 1.21422 0.95369 0.94073 0.87328 1.22489 1.02294 0.95311 1.03775 1.45822 1.43657 1.32670 1.05433 1.21000 0.77388 0.78629 0.92320 1.90334 1.56521 1.50911 1.38452 1.22306 0.97812 0.97499 0.92515 1.64813 1.38119 1.02131 1.17103 1.23504 0.94151 0.92249 0.99918 1.22984 0.99380 0.93964 0.99344 1.19342 0.87521 0.86998 0.85822 1.86059 1.61267 1.27136 1.66161 1.21724 0.95579 0.92299 1.46893 0.91895 1.25016 0.97450 0.96972 0.93990 1.69623 1.31808 1.03717 1.48856 0.86400 0.83936 0.78914 0.77911 1.19662 1.20911 1.20969 1.22939 1.00260 0.96510 0.87607 1.17978 0.96432 0.94245 0.84466 1.21299 1.02802 0.97000 0.98632 1.20883 0.99653 0.99482 0.92134 1.21109 1.01079 0.96558 0.98457 1.21192 0.96881 0.96210 0.97364 1.22804 1.02093 1.03223 0.90709 0.90603 0.90829 0.91769 0.87918 0.91720 0.90808 0.90505 0.87844 0.92043 0.89219 0.95710 0.91791 0.91307 0.76395 0.92408 0.94531 0.90002 0.84259 0.86200 0.86575 0.86032 0.80173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.40 8.86 37.16 0.33 -1.07 16 2 C 0.12 1.09 3.04 -67.93 -0.21 0.88 16 3 C -0.18 -1.32 9.00 37.16 0.33 -0.99 16 4 N -0.55 -6.87 2.62 -106.38 -0.28 -7.15 16 5 C 0.52 7.95 7.21 -10.98 -0.08 7.87 16 6 O -0.49 -8.91 10.24 5.55 0.06 -8.86 16 7 C 0.03 0.46 4.02 -4.98 -0.02 0.44 16 8 N -0.50 -9.81 5.22 -231.90 -1.21 -11.02 16 9 C 0.03 0.60 5.36 -1.90 -0.01 0.59 16 10 C -0.12 -2.85 5.50 -24.87 -0.14 -2.98 16 11 C 0.24 6.10 0.99 -90.41 -0.09 6.01 16 12 O -0.60 -15.56 12.93 -35.23 -0.46 -16.02 16 13 C -0.53 -14.25 8.10 -34.44 -0.28 -14.53 16 14 H 0.06 1.70 7.35 -52.49 -0.39 1.31 16 15 C 0.07 1.80 5.26 -17.82 -0.09 1.70 16 16 N -0.90 -24.31 10.88 55.43 0.60 -23.71 16 17 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.05 1.16 6.16 -2.76 -0.02 1.15 16 22 C 0.16 2.11 6.05 -83.70 -0.51 1.60 16 23 C -0.18 -1.84 6.78 -39.39 -0.27 -2.10 16 24 C -0.10 -0.99 10.04 -39.61 -0.40 -1.39 16 25 C -0.15 -1.58 10.04 -39.54 -0.40 -1.97 16 26 C -0.10 -1.17 10.04 -39.61 -0.40 -1.57 16 27 C -0.17 -2.40 9.03 -39.40 -0.36 -2.76 16 28 H 0.08 0.58 4.80 -51.92 -0.25 0.33 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.87 5.71 -51.93 -0.30 0.58 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.08 0.60 4.85 -51.93 -0.25 0.35 16 35 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.06 0.86 6.84 -51.93 -0.35 0.51 16 37 H 0.09 1.90 6.11 -51.94 -0.32 1.58 16 38 H 0.02 0.51 8.02 -51.93 -0.42 0.09 16 39 H 0.06 1.60 8.06 -51.93 -0.42 1.18 16 40 H 0.07 1.77 7.85 -51.93 -0.41 1.37 16 41 H 0.38 10.26 7.05 45.56 0.32 10.58 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.04 0.75 7.39 -51.93 -0.38 0.37 16 44 H 0.08 1.75 7.40 -51.93 -0.38 1.37 16 45 H 0.14 1.14 3.49 -52.49 -0.18 0.96 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 48 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 49 H 0.18 2.97 4.58 -56.01 -0.26 2.72 16 LS Contribution 370.86 15.07 5.59 5.59 Total: -1.00 -30.05 370.86 -9.81 -39.86 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -6.50 Total: 14.49 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -2.59 Total: -9.12 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: -0.89 Total: -41.88 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.40 Total: -24.87 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.05 -9.81 -39.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.329 kcal (2) G-P(sol) polarization free energy of solvation -30.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds