Wall clock time and date at job start Tue Mar 31 2020 16:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47244 * 2 1 4 4 N 1.46496 * 109.47019 * 119.99758 * 2 1 3 5 5 C 1.34783 * 120.00164 * 125.53569 * 4 2 1 6 6 O 1.21283 * 120.00344 * 183.24374 * 5 4 2 7 7 C 1.50702 * 119.99553 * 3.24397 * 5 4 2 8 8 N 1.46894 * 109.47206 * 186.69765 * 7 5 4 9 9 C 1.48535 * 111.00256 * 52.59593 * 8 7 5 10 10 C 1.54939 * 103.22856 * 159.72369 * 9 8 7 11 11 C 1.54597 * 102.92055 * 322.58961 * 10 9 8 12 12 O 1.42900 * 110.39278 * 262.99819 * 11 10 9 13 13 C 1.50707 * 110.30884 * 140.87315 * 11 10 9 14 14 H 1.08001 * 119.99790 * 244.28489 * 13 11 10 15 15 C 1.37875 * 119.99618 * 64.27990 * 13 11 10 16 16 N 1.31511 * 120.00679 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 119.99522 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47248 * 0.02562 * 17 15 13 19 19 H 1.48496 * 109.47409 * 120.00350 * 17 15 13 20 20 H 1.48507 * 109.46990 * 240.00462 * 17 15 13 21 21 C 1.47901 * 111.00671 * 169.99740 * 8 7 5 22 22 C 1.39927 * 120.00353 * 305.53453 * 4 2 1 23 23 C 1.38872 * 120.06649 * 351.63516 * 22 4 2 24 24 C 1.38112 * 119.92835 * 179.79201 * 23 22 4 25 25 C 1.38285 * 120.06971 * 0.48579 * 24 23 22 26 26 C 1.38291 * 120.13961 * 359.74471 * 25 24 23 27 27 C 1.38110 * 120.06741 * 0.02562 * 26 25 24 28 28 H 1.09008 * 109.46779 * 306.05167 * 1 2 3 29 29 H 1.09001 * 109.47074 * 66.04405 * 1 2 3 30 30 H 1.08993 * 109.47032 * 186.04891 * 1 2 3 31 31 H 1.09000 * 109.46832 * 240.00000 * 2 1 3 32 32 H 1.08995 * 109.47361 * 192.80603 * 3 2 1 33 33 H 1.09006 * 109.46486 * 312.80152 * 3 2 1 34 34 H 1.08996 * 109.47477 * 72.79974 * 3 2 1 35 35 H 1.09002 * 109.47474 * 66.69366 * 7 5 4 36 36 H 1.09003 * 109.47067 * 306.69227 * 7 5 4 37 37 H 1.08989 * 110.67099 * 278.16447 * 9 8 7 38 38 H 1.09003 * 110.66153 * 41.29563 * 9 8 7 39 39 H 1.09000 * 110.72547 * 204.23046 * 10 9 8 40 40 H 1.08997 * 110.87383 * 81.01644 * 10 9 8 41 41 H 0.96701 * 113.99744 * 295.76040 * 12 11 10 42 42 H 0.96993 * 120.00358 * 179.97438 * 16 15 13 43 43 H 1.09002 * 109.91110 * 333.51087 * 21 8 7 44 44 H 1.09002 * 109.91733 * 94.59907 * 21 8 7 45 45 H 1.07994 * 120.03745 * 0.02562 * 23 22 4 46 46 H 1.07997 * 119.96662 * 180.23056 * 24 23 22 47 47 H 1.08000 * 119.93469 * 179.76605 * 25 24 23 48 48 H 1.07996 * 119.96426 * 180.02562 * 26 25 24 49 49 H 1.08000 * 120.03032 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8826 -1.7178 1.0757 6 8 3.2413 -2.3273 2.0610 7 6 3.4033 -2.1089 -0.2833 8 7 4.1926 -3.3425 -0.1688 9 6 3.4217 -4.4053 0.5255 10 6 4.1454 -5.7063 0.0961 11 6 4.5208 -5.4230 -1.3766 12 8 3.5507 -5.9944 -2.2565 13 6 5.8906 -5.9722 -1.6821 14 1 6.6953 -5.3012 -1.9442 15 6 6.1164 -7.3312 -1.6269 16 7 5.1365 -8.1484 -1.3081 17 14 7.8145 -8.0119 -2.0049 18 1 8.7345 -6.8932 -2.3328 19 1 8.3292 -8.7445 -0.8202 20 1 7.7298 -8.9390 -3.1619 21 6 4.5197 -3.8884 -1.5039 22 6 1.5876 -0.2837 2.4638 23 6 0.8385 0.8771 2.6047 24 6 0.4111 1.2737 3.8568 25 6 0.7369 0.5216 4.9705 26 6 1.4868 -0.6323 4.8341 27 6 1.9131 -1.0368 3.5842 28 1 -0.3633 0.6048 0.8309 29 1 -0.3633 0.4173 -0.9392 30 1 -0.3633 -1.0219 0.1083 31 1 1.8933 -0.5138 -0.8900 32 1 3.1059 1.4511 -0.2278 33 1 1.5028 2.0178 -0.7541 34 1 1.8747 1.8864 0.9816 35 1 4.0326 -1.3099 -0.6752 36 1 2.5647 -2.2757 -0.9594 37 1 3.4739 -4.2748 1.6063 38 1 2.3854 -4.4121 0.1874 39 1 3.4739 -6.5621 0.1653 40 1 5.0396 -5.8699 0.6975 41 1 3.5064 -6.9597 -2.2195 42 1 5.2953 -9.1044 -1.2697 43 1 3.7664 -3.5763 -2.2273 44 1 5.5031 -3.5381 -1.8176 45 1 0.5872 1.4671 1.7358 46 1 -0.1746 2.1743 3.9666 47 1 0.4048 0.8358 5.9490 48 1 1.7393 -1.2178 5.7057 49 1 2.4991 -1.9378 3.4784 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592146350.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:13 Heat of formation + Delta-G solvation = -30.638418 kcal Electronic energy + Delta-G solvation = -29657.559312 eV Core-core repulsion = 25778.347480 eV Total energy + Delta-G solvation = -3879.211832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.27836 -40.28125 -39.13122 -37.82448 -36.51247 -34.12570 -33.35375 -32.50616 -31.56388 -30.63662 -29.85886 -28.14628 -27.87182 -25.97412 -23.90548 -23.46171 -23.01578 -22.22421 -21.29976 -20.45167 -19.13676 -18.38284 -17.75011 -17.40862 -17.04187 -16.88295 -16.76427 -16.28395 -15.76288 -15.50326 -15.23222 -15.13424 -14.88995 -14.56220 -14.20520 -14.15515 -14.03296 -13.98645 -13.84947 -13.45686 -13.31500 -13.09349 -12.95953 -12.94221 -12.71552 -12.55064 -12.46197 -12.38587 -12.31957 -12.25511 -12.09108 -11.91344 -11.24064 -11.16605 -11.13068 -10.62756 -10.28936 -10.03544 -9.79378 -9.39612 -8.86736 -8.21518 -6.34919 0.34238 0.52372 1.39834 1.42768 1.51134 1.53844 1.62774 2.39633 2.92747 2.95944 3.09036 3.24871 3.69630 3.86521 4.02594 4.05334 4.08717 4.14069 4.19323 4.23955 4.27440 4.35825 4.38390 4.45019 4.49487 4.56176 4.59201 4.63551 4.70514 4.82790 4.86828 4.89198 4.96231 5.06625 5.17724 5.26341 5.28337 5.32158 5.35493 5.37921 5.52881 5.57003 5.66892 5.71070 5.75251 5.88751 6.01909 6.14123 6.20141 6.33038 6.69848 7.02792 7.34568 7.43129 8.84945 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.002816 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.184482 B = 9942.157568 C =10571.014154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.110 3.890 3 C -0.176 4.176 4 N -0.544 5.544 5 C 0.510 3.490 6 O -0.528 6.528 7 C 0.031 3.969 8 N -0.507 5.507 9 C 0.048 3.952 10 C -0.111 4.111 11 C 0.228 3.772 12 O -0.600 6.600 13 C -0.551 4.551 14 H 0.058 0.942 15 C 0.024 3.976 16 N -0.917 5.917 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.277 1.277 21 C 0.064 3.936 22 C 0.142 3.858 23 C -0.170 4.170 24 C -0.100 4.100 25 C -0.152 4.152 26 C -0.112 4.112 27 C -0.202 4.202 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.131 0.869 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.027 0.973 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.378 0.622 42 H 0.268 0.732 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.165 0.835 46 H 0.156 0.844 47 H 0.142 0.858 48 H 0.127 0.873 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.007 22.034 4.963 25.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.009 3.991 3 C -0.233 4.233 4 N -0.267 5.267 5 C 0.300 3.700 6 O -0.405 6.405 7 C -0.100 4.100 8 N -0.232 5.232 9 C -0.080 4.080 10 C -0.150 4.150 11 C 0.188 3.812 12 O -0.409 6.409 13 C -0.589 4.589 14 H 0.076 0.924 15 C -0.176 4.176 16 N -0.557 5.557 17 Si 0.787 3.213 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.203 1.203 21 C -0.064 4.064 22 C 0.048 3.952 23 C -0.189 4.189 24 C -0.118 4.118 25 C -0.171 4.171 26 C -0.130 4.130 27 C -0.221 4.221 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.127 0.873 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.098 0.902 37 H 0.103 0.897 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.229 0.771 42 H 0.078 0.922 43 H 0.067 0.933 44 H 0.100 0.900 45 H 0.182 0.818 46 H 0.173 0.827 47 H 0.160 0.840 48 H 0.145 0.855 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.454 22.281 5.532 25.656 hybrid contribution 0.389 -1.915 -0.281 1.975 sum -11.065 20.366 5.250 23.765 Atomic orbital electron populations 1.22442 0.92959 1.02692 1.05000 1.21784 0.96287 0.95005 0.86022 1.22465 1.02354 0.94056 1.04449 1.45852 1.42514 1.31810 1.06561 1.21048 0.77914 0.79248 0.91777 1.90362 1.58206 1.52555 1.39401 1.22415 0.98493 0.95897 0.93191 1.64693 1.39458 1.03062 1.15966 1.23228 0.93850 0.91135 0.99770 1.22786 0.98162 0.95059 0.99018 1.19578 0.86658 0.89221 0.85727 1.86049 1.61614 1.26654 1.66583 1.21992 0.96465 0.92841 1.47609 0.92411 1.25737 1.00821 0.97241 0.93769 1.69709 1.33228 1.03920 1.48879 0.85451 0.79897 0.78193 0.77712 1.19362 1.20787 1.20299 1.22757 1.00805 0.94007 0.88791 1.18167 0.97585 0.95307 0.84124 1.21612 1.01376 0.95879 1.00075 1.21356 0.98879 1.00192 0.91396 1.21451 0.99898 0.95546 1.00159 1.21347 0.97527 0.97364 0.96790 1.22651 1.03612 1.03295 0.92568 0.90186 0.88215 0.93719 0.87328 0.92193 0.88053 0.90861 0.85133 0.90208 0.89714 0.95455 0.93558 0.93851 0.77129 0.92213 0.93277 0.89980 0.81764 0.82679 0.83990 0.85489 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 8.86 71.98 0.64 -1.60 16 2 C 0.11 1.72 3.04 45.00 0.14 1.85 16 3 C -0.18 -1.98 9.00 71.98 0.65 -1.33 16 4 N -0.54 -13.12 2.62 -608.87 -1.60 -14.71 16 5 C 0.51 15.77 7.21 87.66 0.63 16.40 16 6 O -0.53 -20.25 10.24 -3.04 -0.03 -20.28 16 7 C 0.03 0.90 4.02 85.56 0.34 1.24 16 8 N -0.51 -20.05 5.22 -887.58 -4.63 -24.68 16 9 C 0.05 2.06 5.36 86.65 0.46 2.52 16 10 C -0.11 -5.60 5.50 31.80 0.17 -5.42 16 11 C 0.23 11.65 0.99 -10.66 -0.01 11.64 16 12 O -0.60 -31.82 12.93 -148.98 -1.93 -33.74 16 13 C -0.55 -30.34 8.10 25.60 0.21 -30.13 16 14 H 0.06 3.16 7.35 -2.91 -0.02 3.14 16 15 C 0.02 1.30 5.26 84.65 0.45 1.74 16 16 N -0.92 -50.54 10.88 21.45 0.23 -50.31 16 17 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.06 2.73 6.16 86.44 0.53 3.27 16 22 C 0.14 3.59 6.05 38.15 0.23 3.82 16 23 C -0.17 -3.08 6.78 22.39 0.15 -2.93 16 24 C -0.10 -1.60 10.04 22.25 0.22 -1.37 16 25 C -0.15 -2.79 10.04 22.29 0.22 -2.57 16 26 C -0.11 -2.68 10.04 22.25 0.22 -2.46 16 27 C -0.20 -5.95 9.03 22.39 0.20 -5.75 16 28 H 0.08 0.95 4.80 -2.38 -0.01 0.94 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.11 1.55 5.71 -2.39 -0.01 1.53 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 0.61 8.08 -2.38 -0.02 0.59 16 34 H 0.07 0.89 4.85 -2.39 -0.01 0.88 16 35 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 36 H 0.08 2.08 6.84 -2.39 -0.02 2.07 16 37 H 0.08 3.78 6.11 -2.39 -0.01 3.77 16 38 H 0.03 1.15 8.02 -2.39 -0.02 1.13 16 39 H 0.05 2.42 8.06 -2.39 -0.02 2.41 16 40 H 0.04 2.34 7.85 -2.39 -0.02 2.33 16 41 H 0.38 20.75 7.05 -74.06 -0.52 20.23 16 42 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 43 H 0.05 1.95 7.39 -2.39 -0.02 1.93 16 44 H 0.08 3.49 7.40 -2.39 -0.02 3.47 16 45 H 0.17 2.07 3.49 -2.91 -0.01 2.06 16 46 H 0.16 1.40 8.06 -2.91 -0.02 1.37 16 47 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 48 H 0.13 2.72 8.06 -2.91 -0.02 2.69 16 49 H 0.15 5.42 4.58 -58.67 -0.27 5.15 16 Total: -1.00 -67.62 370.86 -0.26 -67.88 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: 0.20 Total: 41.54 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 5.47 Total: -11.08 kcal Atomic # 7 Polarization: -83.71 SS G_CDS: -6.00 Total: -89.70 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -1.96 Total: -54.02 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -67.62 -0.26 -67.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592146350.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.241 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds