Wall clock time and date at job start Tue Mar 31 2020 16:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47085 * 2 1 4 4 N 1.46505 * 109.47102 * 180.02562 * 3 2 1 5 5 C 1.46498 * 120.00015 * 269.99809 * 4 3 2 6 6 C 1.39047 * 119.99850 * 90.00075 * 4 3 2 7 7 C 1.39218 * 119.93432 * 0.27519 * 6 4 3 8 8 C 1.37613 * 120.06849 * 180.28411 * 7 6 4 9 9 C 1.39787 * 119.92873 * 359.44113 * 8 7 6 10 10 C 1.47522 * 120.06895 * 180.26200 * 9 8 7 11 11 O 1.21595 * 120.00066 * 24.60408 * 10 9 8 12 12 N 1.34780 * 120.00266 * 204.61266 * 10 9 8 13 13 C 1.47431 * 125.64468 * 5.42696 * 12 10 9 14 14 C 1.55131 * 104.71532 * 155.82429 * 13 12 10 15 15 C 1.55148 * 101.49065 * 37.29610 * 14 13 12 16 16 O 1.42896 * 110.72026 * 82.69523 * 15 14 13 17 17 C 1.50701 * 110.72209 * 205.96844 * 15 14 13 18 18 H 1.08004 * 119.99639 * 354.97352 * 17 15 14 19 19 C 1.37871 * 120.00150 * 174.97524 * 17 15 14 20 20 N 1.31518 * 119.99979 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00232 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46854 * 90.00034 * 21 19 17 23 23 H 1.48499 * 109.47251 * 210.00152 * 21 19 17 24 24 H 1.48499 * 109.46817 * 330.00400 * 21 19 17 25 25 C 1.47022 * 125.64926 * 185.74583 * 12 10 9 26 26 C 1.39800 * 119.86783 * 0.27785 * 9 8 7 27 27 C 1.37616 * 119.92539 * 0.02562 * 26 9 8 28 28 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46953 * 300.00329 * 1 2 3 30 30 H 1.09002 * 109.46751 * 59.99925 * 1 2 3 31 31 H 1.09002 * 109.47389 * 240.00296 * 2 1 3 32 32 H 1.08996 * 109.47342 * 119.99735 * 2 1 3 33 33 H 1.09000 * 109.47493 * 60.00002 * 3 2 1 34 34 H 1.09002 * 109.47387 * 299.99685 * 3 2 1 35 35 H 1.08998 * 109.47103 * 270.00210 * 5 4 3 36 36 H 1.09004 * 109.47117 * 29.99871 * 5 4 3 37 37 H 1.08999 * 109.47473 * 150.00258 * 5 4 3 38 38 H 1.07999 * 119.96166 * 359.97438 * 7 6 4 39 39 H 1.07994 * 120.03059 * 179.72547 * 8 7 6 40 40 H 1.08999 * 110.36732 * 274.75255 * 13 12 10 41 41 H 1.08997 * 110.36319 * 37.07676 * 13 12 10 42 42 H 1.09002 * 111.19018 * 279.18815 * 14 13 12 43 43 H 1.09001 * 110.93463 * 155.29502 * 14 13 12 44 44 H 0.96700 * 114.00361 * 185.02557 * 16 15 14 45 45 H 0.97003 * 119.99822 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.88070 * 300.43321 * 25 12 10 47 47 H 1.08993 * 109.88574 * 61.44487 * 25 12 10 48 48 H 1.07999 * 120.03727 * 180.02562 * 26 9 8 49 49 H 1.07998 * 119.96006 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.2381 1.4423 1.2678 6 6 4.1997 1.4427 -1.2051 7 6 3.5017 1.4487 -2.4097 8 6 4.1865 1.4430 -3.6033 9 6 5.5843 1.4430 -3.6055 10 6 6.3215 1.4427 -4.8834 11 8 5.7959 1.8809 -5.8885 12 7 7.5774 0.9566 -4.9369 13 6 8.2907 0.2955 -3.8288 14 6 9.3576 -0.5926 -4.5212 15 6 9.7841 0.3073 -5.7109 16 8 10.7574 1.2673 -5.2950 17 6 10.3097 -0.5280 -6.8497 18 1 10.4227 -1.5954 -6.7292 19 6 10.6462 0.0702 -8.0454 20 7 10.5090 1.3699 -8.1920 21 14 11.2984 -0.9652 -9.4569 22 1 10.1640 -1.4308 -10.2945 23 1 12.2221 -0.1484 -10.2844 24 1 12.0273 -2.1394 -8.9138 25 6 8.4653 1.0036 -6.1077 26 6 6.2824 1.4429 -2.3943 27 6 5.5919 1.4423 -1.2040 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 4.4198 2.4699 1.5825 36 1 3.6493 0.9284 2.0277 37 1 5.1905 0.9286 1.1370 38 1 2.4218 1.4527 -2.4072 39 1 3.6444 1.4431 -4.5374 40 1 8.7685 1.0375 -3.1890 41 1 7.6032 -0.3203 -3.2490 42 1 8.9228 -1.5276 -4.8747 43 1 10.1984 -0.7829 -3.8541 44 1 11.0007 1.9035 -5.9815 45 1 10.7462 1.7909 -9.0331 46 1 8.0049 0.4767 -6.9435 47 1 8.6592 2.0398 -6.3846 48 1 7.3624 1.4433 -2.3928 49 1 6.1307 1.4418 -0.2679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840803.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:14 Heat of formation + Delta-G solvation = -45.217233 kcal Electronic energy + Delta-G solvation = -28712.501929 eV Core-core repulsion = 24832.657912 eV Total energy + Delta-G solvation = -3879.844016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.15142 -39.03195 -37.27519 -36.41683 -34.30123 -33.70829 -32.20225 -31.20261 -30.33784 -29.62292 -28.03708 -27.53153 -25.78546 -24.66633 -23.22091 -22.27262 -21.92788 -20.76597 -19.68645 -19.14213 -17.50796 -17.15673 -16.71397 -16.05006 -15.50854 -15.18334 -15.06104 -14.97014 -14.73617 -14.42263 -14.16236 -13.87767 -13.52668 -13.41081 -13.12054 -12.96281 -12.83479 -12.59782 -12.49315 -12.40676 -12.24073 -12.07500 -11.84537 -11.67294 -11.56279 -11.33693 -11.10968 -11.01452 -10.84289 -10.70132 -10.48137 -10.47107 -10.16559 -9.85534 -9.27709 -9.26731 -8.91110 -8.64715 -8.28153 -7.83046 -7.36753 -6.25187 -4.33643 1.28433 1.51280 2.84804 3.23637 3.30958 3.32503 3.33697 3.75293 4.13883 4.30291 4.46817 4.58485 4.68684 4.87018 4.91054 4.99721 5.00124 5.04697 5.09999 5.17034 5.23245 5.37801 5.39185 5.41769 5.51089 5.54432 5.61951 5.63785 5.73628 5.76571 5.85221 5.90269 6.01462 6.10511 6.13787 6.20505 6.41929 6.53053 6.64024 6.77025 6.80366 6.91029 7.04754 7.07765 7.31470 7.33599 7.43761 7.76016 8.05301 8.31665 8.69190 8.86637 9.31904 9.40668 10.82610 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.002425 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.755956 B =11543.239147 C =11916.744463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.145 4.145 3 C 0.121 3.879 4 N -0.630 5.630 5 C 0.091 3.909 6 C 0.231 3.769 7 C -0.209 4.209 8 C -0.016 4.016 9 C -0.180 4.180 10 C 0.566 3.434 11 O -0.555 6.555 12 N -0.608 5.608 13 C 0.099 3.901 14 C -0.119 4.119 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.537 4.537 18 H 0.066 0.934 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.903 3.097 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.105 3.895 26 C -0.047 4.047 27 C -0.208 4.208 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.049 0.951 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.382 0.618 45 H 0.270 0.730 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.139 0.861 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.134 -0.772 19.454 24.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C -0.002 4.002 4 N -0.340 5.340 5 C -0.052 4.052 6 C 0.129 3.871 7 C -0.231 4.231 8 C -0.036 4.036 9 C -0.185 4.185 10 C 0.356 3.644 11 O -0.435 6.435 12 N -0.340 5.340 13 C -0.023 4.023 14 C -0.157 4.157 15 C 0.207 3.793 16 O -0.394 6.394 17 C -0.575 4.575 18 H 0.084 0.916 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.730 3.270 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.016 4.016 26 C -0.066 4.066 27 C -0.230 4.230 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.232 0.768 45 H 0.080 0.920 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.157 0.843 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.570 -0.685 19.522 24.980 hybrid contribution 0.351 -0.152 -1.298 1.354 sum -15.219 -0.837 18.224 23.757 Atomic orbital electron populations 1.21709 0.95220 1.02037 1.01879 1.21991 0.95972 0.97612 1.02837 1.21521 0.79312 0.96580 1.02790 1.46354 1.04750 1.79606 1.03242 1.21652 0.97346 1.01222 0.84960 1.17969 0.91272 0.92242 0.85648 1.20563 0.99504 1.12318 0.90736 1.20954 0.92667 0.92191 0.97756 1.19778 0.94053 1.11518 0.93160 1.17882 0.80339 0.78190 0.88032 1.90734 1.67682 1.48650 1.36468 1.48670 1.13006 1.56910 1.15438 1.22603 0.94372 0.95326 0.90042 1.22829 0.96972 0.97806 0.98114 1.19501 0.83952 0.85533 0.90287 1.86100 1.62065 1.47111 1.44102 1.21492 1.44483 0.94642 0.96882 0.91572 1.25075 0.94281 0.95215 0.98738 1.69703 1.47658 1.09127 1.26753 0.86410 0.78833 0.80118 0.81590 1.20439 1.21014 1.19714 1.22983 0.90801 1.01698 0.86161 1.21654 1.00830 0.93132 0.90995 1.20590 0.91836 1.12104 0.98509 0.92438 0.92730 0.92462 0.91340 0.91927 0.90915 0.90408 0.93298 0.91685 0.91045 0.85783 0.85205 0.91580 0.91506 0.90422 0.90554 0.76793 0.92037 0.91493 0.91688 0.84306 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.15 -0.96 6.26 -26.73 -0.17 -1.13 16 3 C 0.12 0.85 5.15 -4.04 -0.02 0.83 16 4 N -0.63 -5.57 2.99 -179.62 -0.54 -6.11 16 5 C 0.09 0.60 10.18 59.85 0.61 1.21 16 6 C 0.23 2.67 6.55 -83.86 -0.55 2.12 16 7 C -0.21 -2.56 9.18 -39.45 -0.36 -2.93 16 8 C -0.02 -0.24 9.58 -39.23 -0.38 -0.62 16 9 C -0.18 -3.06 5.67 -104.95 -0.60 -3.66 16 10 C 0.57 12.06 7.63 -12.47 -0.10 11.97 16 11 O -0.56 -13.76 16.93 5.28 0.09 -13.67 16 12 N -0.61 -12.99 3.32 -171.61 -0.57 -13.56 16 13 C 0.10 1.78 4.99 -2.41 -0.01 1.76 16 14 C -0.12 -2.39 6.24 -24.47 -0.15 -2.54 16 15 C 0.25 6.02 0.85 -89.94 -0.08 5.94 16 16 O -0.59 -14.64 13.08 -35.23 -0.46 -15.10 16 17 C -0.54 -14.13 8.12 -34.44 -0.28 -14.41 16 18 H 0.07 1.71 7.78 -52.48 -0.41 1.31 16 19 C 0.07 1.85 5.28 -17.82 -0.09 1.76 16 20 N -0.89 -24.06 10.98 55.43 0.61 -23.45 16 21 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.11 2.60 5.24 -3.06 -0.02 2.59 16 26 C -0.05 -0.68 8.05 -39.22 -0.32 -0.99 16 27 C -0.21 -2.50 9.18 -39.44 -0.36 -2.87 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 34 H 0.08 0.56 6.16 -51.93 -0.32 0.24 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.33 8.07 -51.93 -0.42 -0.09 16 37 H 0.07 0.46 6.17 -51.93 -0.32 0.14 16 38 H 0.12 1.25 6.11 -52.49 -0.32 0.93 16 39 H 0.13 1.96 7.84 -52.49 -0.41 1.55 16 40 H 0.07 1.11 6.83 -51.93 -0.35 0.76 16 41 H 0.07 1.03 6.81 -51.93 -0.35 0.67 16 42 H 0.08 1.51 8.04 -51.93 -0.42 1.09 16 43 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.38 9.80 7.47 45.56 0.34 10.14 16 45 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.07 1.82 7.81 -51.93 -0.41 1.42 16 47 H 0.06 1.75 7.93 -51.93 -0.41 1.34 16 48 H 0.14 1.94 4.58 -52.49 -0.24 1.70 16 49 H 0.13 1.21 6.11 -52.49 -0.32 0.89 16 LS Contribution 387.29 15.07 5.84 5.84 Total: -1.00 -30.90 387.29 -9.43 -40.33 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -6.88 Total: 11.48 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -2.50 Total: -1.41 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.50 Total: -43.12 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -0.37 Total: -28.77 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.90 -9.43 -40.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840803.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.891 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds