Wall clock time and date at job start Tue Mar 31 2020 16:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47085 * 2 1 4 4 N 1.46505 * 109.47102 * 180.02562 * 3 2 1 5 5 C 1.46498 * 120.00015 * 269.99809 * 4 3 2 6 6 C 1.39047 * 119.99850 * 90.00075 * 4 3 2 7 7 C 1.39218 * 119.93432 * 0.27519 * 6 4 3 8 8 C 1.37613 * 120.06849 * 180.28411 * 7 6 4 9 9 C 1.39787 * 119.92873 * 359.44113 * 8 7 6 10 10 C 1.47522 * 120.06895 * 180.26200 * 9 8 7 11 11 O 1.21595 * 120.00066 * 24.60408 * 10 9 8 12 12 N 1.34780 * 120.00266 * 204.61266 * 10 9 8 13 13 C 1.47431 * 125.64468 * 5.42696 * 12 10 9 14 14 C 1.55131 * 104.71532 * 155.82429 * 13 12 10 15 15 C 1.55148 * 101.49065 * 37.29610 * 14 13 12 16 16 O 1.42896 * 110.72026 * 82.69523 * 15 14 13 17 17 C 1.50701 * 110.72209 * 205.96844 * 15 14 13 18 18 H 1.08004 * 119.99639 * 354.97352 * 17 15 14 19 19 C 1.37871 * 120.00150 * 174.97524 * 17 15 14 20 20 N 1.31518 * 119.99979 * 0.02562 * 19 17 15 21 21 Si 1.86805 * 120.00232 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46854 * 90.00034 * 21 19 17 23 23 H 1.48499 * 109.47251 * 210.00152 * 21 19 17 24 24 H 1.48499 * 109.46817 * 330.00400 * 21 19 17 25 25 C 1.47022 * 125.64926 * 185.74583 * 12 10 9 26 26 C 1.39800 * 119.86783 * 0.27785 * 9 8 7 27 27 C 1.37616 * 119.92539 * 0.02562 * 26 9 8 28 28 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46953 * 300.00329 * 1 2 3 30 30 H 1.09002 * 109.46751 * 59.99925 * 1 2 3 31 31 H 1.09002 * 109.47389 * 240.00296 * 2 1 3 32 32 H 1.08996 * 109.47342 * 119.99735 * 2 1 3 33 33 H 1.09000 * 109.47493 * 60.00002 * 3 2 1 34 34 H 1.09002 * 109.47387 * 299.99685 * 3 2 1 35 35 H 1.08998 * 109.47103 * 270.00210 * 5 4 3 36 36 H 1.09004 * 109.47117 * 29.99871 * 5 4 3 37 37 H 1.08999 * 109.47473 * 150.00258 * 5 4 3 38 38 H 1.07999 * 119.96166 * 359.97438 * 7 6 4 39 39 H 1.07994 * 120.03059 * 179.72547 * 8 7 6 40 40 H 1.08999 * 110.36732 * 274.75255 * 13 12 10 41 41 H 1.08997 * 110.36319 * 37.07676 * 13 12 10 42 42 H 1.09002 * 111.19018 * 279.18815 * 14 13 12 43 43 H 1.09001 * 110.93463 * 155.29502 * 14 13 12 44 44 H 0.96700 * 114.00361 * 185.02557 * 16 15 14 45 45 H 0.97003 * 119.99822 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.88070 * 300.43321 * 25 12 10 47 47 H 1.08993 * 109.88574 * 61.44487 * 25 12 10 48 48 H 1.07999 * 120.03727 * 180.02562 * 26 9 8 49 49 H 1.07998 * 119.96006 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.2381 1.4423 1.2678 6 6 4.1997 1.4427 -1.2051 7 6 3.5017 1.4487 -2.4097 8 6 4.1865 1.4430 -3.6033 9 6 5.5843 1.4430 -3.6055 10 6 6.3215 1.4427 -4.8834 11 8 5.7959 1.8809 -5.8885 12 7 7.5774 0.9566 -4.9369 13 6 8.2907 0.2955 -3.8288 14 6 9.3576 -0.5926 -4.5212 15 6 9.7841 0.3073 -5.7109 16 8 10.7574 1.2673 -5.2950 17 6 10.3097 -0.5280 -6.8497 18 1 10.4227 -1.5954 -6.7292 19 6 10.6462 0.0702 -8.0454 20 7 10.5090 1.3699 -8.1920 21 14 11.2984 -0.9652 -9.4569 22 1 10.1640 -1.4308 -10.2945 23 1 12.2221 -0.1484 -10.2844 24 1 12.0273 -2.1394 -8.9138 25 6 8.4653 1.0036 -6.1077 26 6 6.2824 1.4429 -2.3943 27 6 5.5919 1.4423 -1.2040 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6767 1.9563 -0.8900 35 1 4.4198 2.4699 1.5825 36 1 3.6493 0.9284 2.0277 37 1 5.1905 0.9286 1.1370 38 1 2.4218 1.4527 -2.4072 39 1 3.6444 1.4431 -4.5374 40 1 8.7685 1.0375 -3.1890 41 1 7.6032 -0.3203 -3.2490 42 1 8.9228 -1.5276 -4.8747 43 1 10.1984 -0.7829 -3.8541 44 1 11.0007 1.9035 -5.9815 45 1 10.7462 1.7909 -9.0331 46 1 8.0049 0.4767 -6.9435 47 1 8.6592 2.0398 -6.3846 48 1 7.3624 1.4433 -2.3928 49 1 6.1307 1.4418 -0.2679 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840803.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:14 Heat of formation + Delta-G solvation = -64.845725 kcal Electronic energy + Delta-G solvation = -28713.353084 eV Core-core repulsion = 24832.657912 eV Total energy + Delta-G solvation = -3880.695172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.46385 -40.29098 -38.92455 -37.45176 -36.11901 -34.33598 -34.23853 -32.36360 -31.71943 -30.88364 -29.54031 -28.38234 -27.26887 -25.98931 -24.54064 -23.32265 -22.81648 -21.66656 -21.45990 -20.62127 -19.11645 -18.52121 -18.00231 -17.39921 -16.95277 -16.59395 -16.43214 -16.07308 -15.92383 -15.63314 -15.17346 -14.97202 -14.87928 -14.77580 -14.60889 -14.33416 -13.94693 -13.89225 -13.58832 -13.45660 -13.35155 -13.09475 -13.03354 -12.88256 -12.79279 -12.63568 -12.42466 -12.32829 -12.27222 -12.20335 -12.09327 -11.69896 -11.51687 -11.14585 -11.01191 -10.76113 -10.64202 -10.27711 -9.95256 -9.58406 -8.27673 -8.24004 -6.42561 0.12564 0.49322 1.40391 1.42105 1.52129 1.89190 2.11372 2.17302 2.38168 2.94444 2.99990 3.65750 3.74802 3.82610 3.92829 4.01940 4.09157 4.13309 4.25001 4.30147 4.33715 4.43100 4.47802 4.48941 4.57433 4.62169 4.68293 4.70239 4.72875 4.76551 4.95769 4.97017 5.02168 5.06784 5.12641 5.21307 5.21721 5.23713 5.27430 5.32126 5.38116 5.45015 5.49249 5.61745 5.73665 5.76872 6.05874 6.31757 6.47739 6.62257 6.70163 7.20164 7.26737 7.34248 8.79470 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.002425 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.755956 B =11543.239147 C =11916.744463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.115 3.885 4 N -0.623 5.623 5 C 0.082 3.918 6 C 0.243 3.757 7 C -0.207 4.207 8 C -0.024 4.024 9 C -0.213 4.213 10 C 0.559 3.441 11 O -0.607 6.607 12 N -0.613 5.613 13 C 0.106 3.894 14 C -0.114 4.114 15 C 0.235 3.765 16 O -0.585 6.585 17 C -0.557 4.557 18 H 0.067 0.933 19 C 0.024 3.976 20 N -0.916 5.916 21 Si 0.964 3.036 22 H -0.280 1.280 23 H -0.281 1.281 24 H -0.263 1.263 25 C 0.122 3.878 26 C -0.043 4.043 27 C -0.205 4.205 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.145 0.855 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.081 0.919 43 H 0.095 0.905 44 H 0.375 0.625 45 H 0.269 0.731 46 H 0.029 0.971 47 H 0.030 0.970 48 H 0.143 0.857 49 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.088 -1.726 23.232 28.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.008 4.008 4 N -0.330 5.330 5 C -0.060 4.060 6 C 0.137 3.863 7 C -0.229 4.229 8 C -0.044 4.044 9 C -0.218 4.218 10 C 0.352 3.648 11 O -0.491 6.491 12 N -0.345 5.345 13 C -0.015 4.015 14 C -0.152 4.152 15 C 0.194 3.806 16 O -0.392 6.392 17 C -0.595 4.595 18 H 0.085 0.915 19 C -0.177 4.177 20 N -0.555 5.555 21 Si 0.789 3.211 22 H -0.206 1.206 23 H -0.206 1.206 24 H -0.188 1.188 25 C -0.001 4.001 26 C -0.063 4.063 27 C -0.227 4.227 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.163 0.837 39 H 0.134 0.866 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.113 0.887 44 H 0.224 0.776 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.049 0.951 48 H 0.160 0.840 49 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -16.536 -1.661 23.384 28.688 hybrid contribution 0.501 0.171 -2.306 2.366 sum -16.035 -1.490 21.078 26.526 Atomic orbital electron populations 1.21695 0.94292 1.02226 1.02459 1.21914 0.96744 0.97068 1.02079 1.21723 0.78154 0.97026 1.03848 1.46671 1.05719 1.77539 1.03100 1.21900 0.97761 1.02232 0.84097 1.18113 0.91478 0.90225 0.86488 1.20690 1.00478 1.11717 0.90045 1.20930 0.92100 0.92880 0.98512 1.19467 0.94475 1.16196 0.91676 1.18719 0.80048 0.76818 0.89223 1.90681 1.68778 1.50868 1.38761 1.48722 1.13091 1.57396 1.15272 1.22779 0.94178 0.95529 0.89026 1.22837 0.98192 0.97384 0.96767 1.19683 0.83085 0.85738 0.92061 1.86086 1.62285 1.47114 1.43759 1.21836 1.44690 0.95001 0.97967 0.91452 1.25842 0.94562 0.96247 1.01064 1.69818 1.48170 1.10376 1.27152 0.85466 0.78112 0.78868 0.78661 1.20645 1.20617 1.18762 1.22503 0.91889 0.98973 0.86719 1.21643 1.00986 0.92931 0.90690 1.20834 0.92109 1.11048 0.98675 0.92503 0.91531 0.92526 0.93194 0.91562 0.88673 0.90609 0.92357 0.89618 0.90590 0.83745 0.86560 0.89924 0.88169 0.90038 0.88658 0.77608 0.92134 0.95284 0.95108 0.83960 0.82739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.49 16 2 C -0.14 -1.43 6.26 30.59 0.19 -1.24 16 3 C 0.11 1.18 5.15 86.38 0.45 1.62 16 4 N -0.62 -8.52 2.99 -722.20 -2.16 -10.68 16 5 C 0.08 0.70 10.18 127.77 1.30 2.00 16 6 C 0.24 4.86 6.55 38.47 0.25 5.11 16 7 C -0.21 -4.73 9.18 22.36 0.21 -4.53 16 8 C -0.02 -0.74 9.58 22.50 0.22 -0.52 16 9 C -0.21 -7.29 5.67 -20.08 -0.11 -7.41 16 10 C 0.56 24.97 7.63 86.69 0.66 25.64 16 11 O -0.61 -32.29 16.93 -4.02 -0.07 -32.36 16 12 N -0.61 -27.08 3.32 -815.10 -2.71 -29.79 16 13 C 0.11 3.67 4.99 86.93 0.43 4.11 16 14 C -0.11 -4.46 6.24 32.06 0.20 -4.26 16 15 C 0.23 11.66 0.85 -10.35 -0.01 11.65 16 16 O -0.58 -29.84 13.08 -148.98 -1.95 -31.78 16 17 C -0.56 -29.92 8.12 25.60 0.21 -29.71 16 18 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 19 C 0.02 1.27 5.28 84.65 0.45 1.72 16 20 N -0.92 -51.27 10.98 21.45 0.24 -51.04 16 21 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 25 C 0.12 6.42 5.24 86.73 0.45 6.87 16 26 C -0.04 -1.17 8.05 22.50 0.18 -0.99 16 27 C -0.20 -4.24 9.18 22.36 0.21 -4.03 16 28 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 33 H 0.10 0.62 8.07 -2.39 -0.02 0.60 16 34 H 0.08 0.84 6.16 -2.39 -0.01 0.83 16 35 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.09 0.43 8.07 -2.38 -0.02 0.41 16 37 H 0.08 0.62 6.17 -2.39 -0.01 0.60 16 38 H 0.14 2.63 6.11 -2.91 -0.02 2.61 16 39 H 0.12 3.73 7.84 -2.91 -0.02 3.71 16 40 H 0.08 2.61 6.83 -2.39 -0.02 2.60 16 41 H 0.10 2.83 6.81 -2.39 -0.02 2.81 16 42 H 0.08 3.10 8.04 -2.39 -0.02 3.08 16 43 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 44 H 0.37 20.03 7.47 -74.06 -0.55 19.48 16 45 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.03 1.69 7.81 -2.39 -0.02 1.67 16 47 H 0.03 1.78 7.93 -2.39 -0.02 1.76 16 48 H 0.14 3.65 4.58 -2.91 -0.01 3.64 16 49 H 0.16 2.27 6.11 -2.91 -0.02 2.25 16 Total: -1.00 -71.21 387.29 1.78 -69.43 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.41 Total: 35.53 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 5.99 Total: 5.55 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -4.63 Total: -91.50 kcal Atomic # 8 Polarization: -62.13 SS G_CDS: -2.02 Total: -64.15 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -71.21 1.78 -69.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840803.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.587 kcal (2) G-P(sol) polarization free energy of solvation -71.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds