Wall clock time and date at job start Tue Mar 31 2020 16:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47206 * 2 1 4 4 N 1.46498 * 109.47281 * 179.97438 * 3 2 1 5 5 C 1.46500 * 120.00400 * 270.00266 * 4 3 2 6 6 C 1.39048 * 119.99804 * 89.99781 * 4 3 2 7 7 C 1.39220 * 119.93335 * 180.02562 * 6 4 3 8 8 C 1.37608 * 120.07452 * 180.02562 * 7 6 4 9 9 C 1.39798 * 119.92819 * 359.97438 * 8 7 6 10 10 C 1.47520 * 120.06919 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99721 * 335.46087 * 10 9 8 12 12 N 1.34774 * 119.99968 * 155.45937 * 10 9 8 13 13 C 1.47471 * 125.62972 * 354.25861 * 12 10 9 14 14 C 1.54912 * 104.81093 * 204.04751 * 13 12 10 15 15 C 1.55154 * 101.61623 * 323.04668 * 14 13 12 16 16 O 1.42902 * 110.71796 * 277.11383 * 15 14 13 17 17 C 1.50700 * 110.71857 * 154.02340 * 15 14 13 18 18 H 1.07999 * 120.00354 * 359.97438 * 17 15 14 19 19 C 1.37882 * 120.00022 * 179.97438 * 17 15 14 20 20 N 1.31509 * 119.99742 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99990 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47304 * 89.99688 * 21 19 17 23 23 H 1.48498 * 109.47026 * 209.99898 * 21 19 17 24 24 H 1.48503 * 109.46831 * 329.99669 * 21 19 17 25 25 C 1.47023 * 125.64827 * 174.23552 * 12 10 9 26 26 C 1.39800 * 119.86230 * 0.24550 * 9 8 7 27 27 C 1.37606 * 119.92794 * 359.51992 * 26 9 8 28 28 H 1.09003 * 109.47339 * 300.00014 * 1 2 3 29 29 H 1.09000 * 109.47171 * 60.00151 * 1 2 3 30 30 H 1.09001 * 109.47053 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47045 * 239.99294 * 2 1 3 32 32 H 1.09007 * 109.46854 * 119.99614 * 2 1 3 33 33 H 1.08995 * 109.47234 * 59.99654 * 3 2 1 34 34 H 1.09000 * 109.46932 * 299.99995 * 3 2 1 35 35 H 1.08996 * 109.46621 * 269.99796 * 5 4 3 36 36 H 1.09000 * 109.46826 * 29.99212 * 5 4 3 37 37 H 1.09001 * 109.47386 * 149.99853 * 5 4 3 38 38 H 1.08006 * 119.96193 * 0.02562 * 7 6 4 39 39 H 1.07996 * 120.03661 * 179.97438 * 8 7 6 40 40 H 1.08997 * 110.34698 * 85.23301 * 13 12 10 41 41 H 1.08994 * 110.40514 * 322.89535 * 13 12 10 42 42 H 1.08994 * 111.00445 * 204.94973 * 14 13 12 43 43 H 1.09005 * 111.00228 * 81.14074 * 14 13 12 44 44 H 0.96703 * 113.99711 * 180.02562 * 16 15 14 45 45 H 0.97009 * 119.99929 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.88205 * 59.57789 * 25 12 10 47 47 H 1.09002 * 110.01353 * 298.48435 * 25 12 10 48 48 H 1.07999 * 120.03402 * 179.74971 * 26 9 8 49 49 H 1.07999 * 119.96840 * 180.20959 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4426 1.2696 6 6 4.2007 1.4423 -1.2033 7 6 5.5929 1.4418 -1.2011 8 6 6.2843 1.4421 -2.3909 9 6 5.5872 1.4424 -3.6027 10 6 6.3253 1.4433 -4.8800 11 8 7.4588 1.8811 -4.9268 12 7 5.7434 0.9588 -5.9949 13 6 4.4293 0.2926 -6.0580 14 6 4.4924 -0.5880 -7.3309 15 6 5.3098 0.3131 -8.2939 16 8 4.4633 1.2744 -8.9274 17 6 6.0293 -0.5208 -9.3224 18 1 5.9296 -1.5961 -9.3116 19 6 6.8149 0.0891 -10.2774 20 7 6.9360 1.3985 -10.2909 21 14 7.7062 -0.9445 -11.5528 22 1 6.8346 -1.1238 -12.7417 23 1 8.9600 -0.2591 -11.9570 24 1 8.0326 -2.2724 -10.9735 25 6 6.3133 1.0075 -7.3493 26 6 4.1893 1.4476 -3.6016 27 6 3.5037 1.4423 -2.4085 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 4.4185 2.4703 1.5841 36 1 3.6476 0.9290 2.0291 37 1 5.1895 0.9288 1.1397 38 1 6.1308 1.4411 -0.2646 39 1 7.3643 1.4421 -2.3885 40 1 3.6334 1.0319 -6.1473 41 1 4.2749 -0.3275 -5.1750 42 1 3.4940 -0.7766 -7.7253 43 1 5.0153 -1.5237 -7.1331 44 1 4.9258 1.8625 -9.5401 45 1 7.4890 1.8276 -10.9625 46 1 7.2671 0.4802 -7.3693 47 1 6.4560 2.0434 -7.6569 48 1 3.6480 1.4519 -4.5361 49 1 2.4237 1.4429 -2.4069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592840807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:17 Heat of formation + Delta-G solvation = -45.611577 kcal Electronic energy + Delta-G solvation = -28790.760328 eV Core-core repulsion = 24910.899212 eV Total energy + Delta-G solvation = -3879.861116 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.15219 -39.02937 -37.27623 -36.40791 -34.34640 -33.68542 -32.13856 -31.07996 -30.52572 -29.60567 -27.87331 -27.68955 -25.78753 -24.69837 -23.08575 -22.48984 -21.78255 -20.78317 -19.67085 -19.14056 -17.49710 -17.20284 -16.68338 -16.13815 -15.45488 -15.20849 -15.06559 -14.89586 -14.76630 -14.41699 -14.18835 -13.87515 -13.51321 -13.36012 -13.12311 -12.95533 -12.82751 -12.64674 -12.52767 -12.36257 -12.22009 -12.05180 -11.88341 -11.67172 -11.52471 -11.34021 -11.09558 -11.04159 -10.85421 -10.67751 -10.48147 -10.47148 -10.15754 -9.86051 -9.32121 -9.26733 -8.91244 -8.63961 -8.28195 -7.84051 -7.36840 -6.27055 -4.35327 1.28246 1.51223 2.84796 3.22615 3.30215 3.31801 3.33147 3.74562 4.13716 4.29118 4.48083 4.59363 4.68630 4.88606 4.92281 4.98542 4.99141 5.06507 5.08987 5.16244 5.25140 5.35241 5.42021 5.42275 5.50833 5.54132 5.62753 5.66194 5.76240 5.76271 5.86957 5.92295 6.02959 6.10470 6.13343 6.21016 6.42037 6.52828 6.63945 6.76954 6.80631 6.89587 7.04696 7.06753 7.31234 7.33567 7.41940 7.76010 8.02607 8.30835 8.67198 8.85778 9.33349 9.45837 10.80793 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.002592 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.365167 B =10799.961000 C =11642.196758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.145 4.145 3 C 0.121 3.879 4 N -0.630 5.630 5 C 0.091 3.909 6 C 0.231 3.769 7 C -0.210 4.210 8 C -0.016 4.016 9 C -0.180 4.180 10 C 0.566 3.434 11 O -0.556 6.556 12 N -0.607 5.607 13 C 0.100 3.900 14 C -0.120 4.120 15 C 0.249 3.751 16 O -0.587 6.587 17 C -0.536 4.536 18 H 0.067 0.933 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.102 3.898 26 C -0.047 4.047 27 C -0.207 4.207 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.125 0.875 39 H 0.130 0.870 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.386 0.614 45 H 0.271 0.729 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.139 0.861 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.936 -0.929 21.812 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C -0.002 4.002 4 N -0.339 5.339 5 C -0.052 4.052 6 C 0.129 3.871 7 C -0.232 4.232 8 C -0.035 4.035 9 C -0.185 4.185 10 C 0.356 3.644 11 O -0.436 6.436 12 N -0.339 5.339 13 C -0.023 4.023 14 C -0.158 4.158 15 C 0.208 3.792 16 O -0.397 6.397 17 C -0.575 4.575 18 H 0.085 0.915 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.732 3.268 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.020 4.020 26 C -0.066 4.066 27 C -0.229 4.229 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.238 0.762 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.157 0.843 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.749 -0.801 22.270 24.742 hybrid contribution 0.972 -0.174 -0.966 1.381 sum -9.778 -0.975 21.305 23.462 Atomic orbital electron populations 1.21709 0.95175 1.02073 1.01904 1.21990 0.96015 0.97562 1.02828 1.21525 0.79236 0.96625 1.02820 1.46356 1.04780 1.79590 1.03216 1.21647 0.97327 1.01194 0.84997 1.17971 0.91217 0.92230 0.85707 1.20566 0.91870 1.12400 0.98400 1.20954 1.00059 0.92166 0.90360 1.19774 0.93644 1.11558 0.93553 1.17884 0.85595 0.78176 0.82764 1.90733 1.18419 1.48699 1.85745 1.48641 1.20005 1.56804 1.08459 1.22559 0.85475 0.95294 0.98954 1.22799 1.01349 0.97817 0.93816 1.19473 0.85524 0.85475 0.88721 1.86064 1.40256 1.50421 1.62936 1.21530 1.28836 0.93900 1.13203 0.91515 1.25078 0.95499 0.95224 0.97510 1.69575 1.40024 1.08376 1.35574 0.86390 0.78984 0.80250 0.81212 1.20390 1.20996 1.19712 1.23016 0.98742 1.01679 0.78542 1.21645 0.93298 0.93128 0.98511 1.20587 0.99565 1.12036 0.90749 0.92768 0.92386 0.92414 0.91283 0.91990 0.90938 0.90344 0.93316 0.91678 0.91128 0.85756 0.85195 0.91595 0.91511 0.90500 0.90531 0.76188 0.91917 0.91584 0.91788 0.84326 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.15 -0.97 6.26 -26.73 -0.17 -1.13 16 3 C 0.12 0.85 5.14 -4.04 -0.02 0.83 16 4 N -0.63 -5.57 2.99 -179.63 -0.54 -6.10 16 5 C 0.09 0.60 10.18 59.85 0.61 1.21 16 6 C 0.23 2.67 6.55 -83.86 -0.55 2.12 16 7 C -0.21 -2.57 9.18 -39.45 -0.36 -2.93 16 8 C -0.02 -0.24 9.58 -39.23 -0.38 -0.61 16 9 C -0.18 -3.06 5.67 -104.95 -0.59 -3.66 16 10 C 0.57 12.05 7.63 -12.48 -0.10 11.95 16 11 O -0.56 -13.73 16.93 5.28 0.09 -13.64 16 12 N -0.61 -12.97 3.33 -171.72 -0.57 -13.54 16 13 C 0.10 1.79 4.98 -2.50 -0.01 1.78 16 14 C -0.12 -2.40 6.22 -24.58 -0.15 -2.55 16 15 C 0.25 6.06 0.86 -89.94 -0.08 5.98 16 16 O -0.59 -14.84 13.09 -35.23 -0.46 -15.30 16 17 C -0.54 -14.10 8.11 -34.44 -0.28 -14.38 16 18 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 19 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 20 N -0.90 -24.06 10.98 55.43 0.61 -23.45 16 21 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.10 2.52 5.55 -3.07 -0.02 2.51 16 26 C -0.05 -0.67 8.06 -39.23 -0.32 -0.99 16 27 C -0.21 -2.50 9.18 -39.45 -0.36 -2.86 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.07 0.41 8.07 -51.93 -0.42 -0.01 16 34 H 0.08 0.57 6.17 -51.93 -0.32 0.24 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.32 8.07 -51.93 -0.42 -0.09 16 37 H 0.07 0.46 6.17 -51.93 -0.32 0.14 16 38 H 0.12 1.23 6.11 -52.48 -0.32 0.91 16 39 H 0.13 1.95 7.84 -52.49 -0.41 1.54 16 40 H 0.07 1.12 6.81 -51.93 -0.35 0.76 16 41 H 0.07 1.03 6.85 -51.93 -0.36 0.67 16 42 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 43 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 44 H 0.39 10.11 6.98 45.56 0.32 10.43 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 46 H 0.07 1.78 7.82 -51.93 -0.41 1.37 16 47 H 0.06 1.72 8.07 -51.93 -0.42 1.30 16 48 H 0.14 1.94 4.60 -52.49 -0.24 1.70 16 49 H 0.12 1.24 6.11 -52.49 -0.32 0.91 16 LS Contribution 387.27 15.07 5.84 5.84 Total: -1.00 -30.81 387.27 -9.46 -40.27 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.91 Total: 11.81 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -2.50 Total: -1.46 kcal Atomic # 7 Polarization: -42.60 SS G_CDS: -0.50 Total: -43.10 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.37 Total: -28.95 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.81 -9.46 -40.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.339 kcal (2) G-P(sol) polarization free energy of solvation -30.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds