Wall clock time and date at job start Tue Mar 31 2020 16:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47206 * 2 1 4 4 N 1.46498 * 109.47281 * 179.97438 * 3 2 1 5 5 C 1.46500 * 120.00400 * 270.00266 * 4 3 2 6 6 C 1.39048 * 119.99804 * 89.99781 * 4 3 2 7 7 C 1.39220 * 119.93335 * 180.02562 * 6 4 3 8 8 C 1.37608 * 120.07452 * 180.02562 * 7 6 4 9 9 C 1.39798 * 119.92819 * 359.97438 * 8 7 6 10 10 C 1.47520 * 120.06919 * 179.97438 * 9 8 7 11 11 O 1.21596 * 119.99721 * 335.46087 * 10 9 8 12 12 N 1.34774 * 119.99968 * 155.45937 * 10 9 8 13 13 C 1.47471 * 125.62972 * 354.25861 * 12 10 9 14 14 C 1.54912 * 104.81093 * 204.04751 * 13 12 10 15 15 C 1.55154 * 101.61623 * 323.04668 * 14 13 12 16 16 O 1.42902 * 110.71796 * 277.11383 * 15 14 13 17 17 C 1.50700 * 110.71857 * 154.02340 * 15 14 13 18 18 H 1.07999 * 120.00354 * 359.97438 * 17 15 14 19 19 C 1.37882 * 120.00022 * 179.97438 * 17 15 14 20 20 N 1.31509 * 119.99742 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 119.99990 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47304 * 89.99688 * 21 19 17 23 23 H 1.48498 * 109.47026 * 209.99898 * 21 19 17 24 24 H 1.48503 * 109.46831 * 329.99669 * 21 19 17 25 25 C 1.47023 * 125.64827 * 174.23552 * 12 10 9 26 26 C 1.39800 * 119.86230 * 0.24550 * 9 8 7 27 27 C 1.37606 * 119.92794 * 359.51992 * 26 9 8 28 28 H 1.09003 * 109.47339 * 300.00014 * 1 2 3 29 29 H 1.09000 * 109.47171 * 60.00151 * 1 2 3 30 30 H 1.09001 * 109.47053 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47045 * 239.99294 * 2 1 3 32 32 H 1.09007 * 109.46854 * 119.99614 * 2 1 3 33 33 H 1.08995 * 109.47234 * 59.99654 * 3 2 1 34 34 H 1.09000 * 109.46932 * 299.99995 * 3 2 1 35 35 H 1.08996 * 109.46621 * 269.99796 * 5 4 3 36 36 H 1.09000 * 109.46826 * 29.99212 * 5 4 3 37 37 H 1.09001 * 109.47386 * 149.99853 * 5 4 3 38 38 H 1.08006 * 119.96193 * 0.02562 * 7 6 4 39 39 H 1.07996 * 120.03661 * 179.97438 * 8 7 6 40 40 H 1.08997 * 110.34698 * 85.23301 * 13 12 10 41 41 H 1.08994 * 110.40514 * 322.89535 * 13 12 10 42 42 H 1.08994 * 111.00445 * 204.94973 * 14 13 12 43 43 H 1.09005 * 111.00228 * 81.14074 * 14 13 12 44 44 H 0.96703 * 113.99711 * 180.02562 * 16 15 14 45 45 H 0.97009 * 119.99929 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.88205 * 59.57789 * 25 12 10 47 47 H 1.09002 * 110.01353 * 298.48435 * 25 12 10 48 48 H 1.07999 * 120.03402 * 179.74971 * 26 9 8 49 49 H 1.07999 * 119.96840 * 180.20959 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.2370 1.4426 1.2696 6 6 4.2007 1.4423 -1.2033 7 6 5.5929 1.4418 -1.2011 8 6 6.2843 1.4421 -2.3909 9 6 5.5872 1.4424 -3.6027 10 6 6.3253 1.4433 -4.8800 11 8 7.4588 1.8811 -4.9268 12 7 5.7434 0.9588 -5.9949 13 6 4.4293 0.2926 -6.0580 14 6 4.4924 -0.5880 -7.3309 15 6 5.3098 0.3131 -8.2939 16 8 4.4633 1.2744 -8.9274 17 6 6.0293 -0.5208 -9.3224 18 1 5.9296 -1.5961 -9.3116 19 6 6.8149 0.0891 -10.2774 20 7 6.9360 1.3985 -10.2909 21 14 7.7062 -0.9445 -11.5528 22 1 6.8346 -1.1238 -12.7417 23 1 8.9600 -0.2591 -11.9570 24 1 8.0326 -2.2724 -10.9735 25 6 6.3133 1.0075 -7.3493 26 6 4.1893 1.4476 -3.6016 27 6 3.5037 1.4423 -2.4085 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 4.4185 2.4703 1.5841 36 1 3.6476 0.9290 2.0291 37 1 5.1895 0.9288 1.1397 38 1 6.1308 1.4411 -0.2646 39 1 7.3643 1.4421 -2.3885 40 1 3.6334 1.0319 -6.1473 41 1 4.2749 -0.3275 -5.1750 42 1 3.4940 -0.7766 -7.7253 43 1 5.0153 -1.5237 -7.1331 44 1 4.9258 1.8625 -9.5401 45 1 7.4890 1.8276 -10.9625 46 1 7.2671 0.4802 -7.3693 47 1 6.4560 2.0434 -7.6569 48 1 3.6480 1.4519 -4.5361 49 1 2.4237 1.4429 -2.4069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592840807.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:17 Heat of formation + Delta-G solvation = -65.025465 kcal Electronic energy + Delta-G solvation = -28791.602178 eV Core-core repulsion = 24910.899212 eV Total energy + Delta-G solvation = -3880.702966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46404 -40.28890 -38.92681 -37.44180 -36.15682 -34.33367 -34.17449 -32.16073 -31.92933 -30.93854 -29.49550 -28.38506 -27.30257 -25.99076 -24.48309 -23.42338 -22.71162 -21.71145 -21.42026 -20.61828 -19.16911 -18.50232 -18.00701 -17.38742 -16.99322 -16.63034 -16.37487 -16.10830 -15.86268 -15.62811 -15.20404 -15.00336 -14.86351 -14.75259 -14.52684 -14.34406 -13.99752 -13.86346 -13.60027 -13.46327 -13.34693 -13.09379 -13.04045 -12.87362 -12.77965 -12.68898 -12.39912 -12.30757 -12.24181 -12.18440 -12.09535 -11.71007 -11.49423 -11.18449 -11.01930 -10.75391 -10.62804 -10.28467 -9.95320 -9.59299 -8.28522 -8.24513 -6.43709 0.12411 0.49319 1.40735 1.42457 1.52369 1.88524 2.10828 2.16933 2.37895 2.94405 2.98540 3.65750 3.75351 3.82965 3.92163 4.06498 4.11066 4.13546 4.24118 4.29328 4.34266 4.43060 4.47654 4.50868 4.57107 4.62749 4.68520 4.69456 4.72418 4.78475 4.93949 4.99117 4.99602 5.06683 5.12727 5.20822 5.23759 5.25510 5.28805 5.32664 5.38563 5.47081 5.49233 5.61002 5.74527 5.76787 6.03150 6.31641 6.47569 6.61118 6.69239 7.19442 7.28182 7.37635 8.78488 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.020838 B = 0.002592 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.365167 B =10799.961000 C =11642.196758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.115 3.885 4 N -0.623 5.623 5 C 0.082 3.918 6 C 0.243 3.757 7 C -0.208 4.208 8 C -0.024 4.024 9 C -0.213 4.213 10 C 0.559 3.441 11 O -0.607 6.607 12 N -0.612 5.612 13 C 0.107 3.893 14 C -0.114 4.114 15 C 0.235 3.765 16 O -0.587 6.587 17 C -0.557 4.557 18 H 0.068 0.932 19 C 0.023 3.977 20 N -0.918 5.918 21 Si 0.966 3.034 22 H -0.270 1.270 23 H -0.286 1.286 24 H -0.268 1.268 25 C 0.118 3.882 26 C -0.043 4.043 27 C -0.204 4.204 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.149 0.851 39 H 0.118 0.882 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.378 0.622 45 H 0.271 0.729 46 H 0.031 0.969 47 H 0.029 0.971 48 H 0.141 0.859 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 -1.912 24.564 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C -0.007 4.007 4 N -0.330 5.330 5 C -0.060 4.060 6 C 0.137 3.863 7 C -0.230 4.230 8 C -0.044 4.044 9 C -0.218 4.218 10 C 0.352 3.648 11 O -0.490 6.490 12 N -0.344 5.344 13 C -0.015 4.015 14 C -0.152 4.152 15 C 0.195 3.805 16 O -0.397 6.397 17 C -0.595 4.595 18 H 0.086 0.914 19 C -0.177 4.177 20 N -0.558 5.558 21 Si 0.791 3.209 22 H -0.195 1.195 23 H -0.211 1.211 24 H -0.193 1.193 25 C -0.006 4.006 26 C -0.063 4.063 27 C -0.226 4.226 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.167 0.833 39 H 0.136 0.864 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.229 0.771 45 H 0.080 0.920 46 H 0.049 0.951 47 H 0.047 0.953 48 H 0.159 0.841 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -13.396 -1.806 25.078 28.489 hybrid contribution 1.697 0.163 -1.612 2.347 sum -11.699 -1.643 23.466 26.272 Atomic orbital electron populations 1.21694 0.94259 1.02233 1.02492 1.21916 0.96750 0.97003 1.02135 1.21739 0.77907 0.97110 1.03973 1.46672 1.05803 1.77525 1.03017 1.21878 0.97670 1.02149 0.84280 1.18113 0.91137 0.90215 0.86824 1.20731 0.92433 1.11670 0.98170 1.20948 0.99732 0.92771 0.90900 1.19466 0.94623 1.16226 0.91518 1.18718 0.85266 0.76805 0.83986 1.90680 1.20857 1.50873 1.86639 1.48695 1.21185 1.57315 1.07169 1.22727 0.83970 0.95484 0.99270 1.22803 1.01527 0.97408 0.93462 1.19667 0.86257 0.85661 0.88925 1.86050 1.40295 1.50516 1.62794 1.21866 1.29419 0.94253 1.13973 0.91371 1.25852 0.96200 0.96256 0.99397 1.69684 1.40421 1.09621 1.36098 0.85436 0.77750 0.78760 0.78993 1.19509 1.21134 1.19264 1.22561 0.97888 0.98955 0.81170 1.21616 0.91969 0.92997 0.99670 1.20793 1.00739 1.11123 0.89968 0.91708 0.92302 0.92524 0.92868 0.91810 0.88818 0.90248 0.92416 0.89539 0.90970 0.83309 0.86415 0.90070 0.88192 0.88681 0.90057 0.77095 0.91951 0.95071 0.95274 0.84110 0.83180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 71.98 0.71 -0.43 16 2 C -0.14 -1.36 6.26 30.59 0.19 -1.17 16 3 C 0.12 1.13 5.14 86.38 0.44 1.57 16 4 N -0.62 -8.53 2.99 -722.22 -2.16 -10.69 16 5 C 0.08 0.75 10.18 127.77 1.30 2.05 16 6 C 0.24 4.86 6.55 38.47 0.25 5.11 16 7 C -0.21 -4.66 9.18 22.36 0.21 -4.45 16 8 C -0.02 -0.71 9.58 22.50 0.22 -0.49 16 9 C -0.21 -7.29 5.67 -20.07 -0.11 -7.40 16 10 C 0.56 24.93 7.63 86.69 0.66 25.59 16 11 O -0.61 -32.09 16.93 -4.02 -0.07 -32.16 16 12 N -0.61 -27.06 3.33 -815.45 -2.71 -29.78 16 13 C 0.11 3.72 4.98 86.85 0.43 4.15 16 14 C -0.11 -4.49 6.22 31.99 0.20 -4.29 16 15 C 0.24 11.75 0.86 -10.35 -0.01 11.74 16 16 O -0.59 -30.41 13.09 -148.98 -1.95 -32.36 16 17 C -0.56 -29.91 8.11 25.60 0.21 -29.70 16 18 H 0.07 3.55 7.76 -2.91 -0.02 3.52 16 19 C 0.02 1.25 5.28 84.66 0.45 1.70 16 20 N -0.92 -51.19 10.98 21.45 0.24 -50.95 16 21 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 23 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 24 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 25 C 0.12 6.17 5.55 86.73 0.48 6.65 16 26 C -0.04 -1.18 8.06 22.50 0.18 -1.00 16 27 C -0.20 -4.31 9.18 22.36 0.21 -4.11 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.09 0.60 8.07 -2.39 -0.02 0.58 16 34 H 0.08 0.81 6.17 -2.39 -0.01 0.79 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.09 0.46 8.07 -2.39 -0.02 0.44 16 37 H 0.07 0.66 6.17 -2.39 -0.01 0.65 16 38 H 0.15 2.53 6.11 -2.91 -0.02 2.51 16 39 H 0.12 3.72 7.84 -2.91 -0.02 3.69 16 40 H 0.08 2.61 6.81 -2.39 -0.02 2.59 16 41 H 0.10 2.85 6.85 -2.39 -0.02 2.84 16 42 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 43 H 0.08 3.09 8.03 -2.38 -0.02 3.07 16 44 H 0.38 20.64 6.98 -74.06 -0.52 20.12 16 45 H 0.27 14.43 8.31 -92.70 -0.77 13.66 16 46 H 0.03 1.80 7.82 -2.39 -0.02 1.78 16 47 H 0.03 1.68 8.07 -2.39 -0.02 1.66 16 48 H 0.14 3.68 4.60 -2.91 -0.01 3.67 16 49 H 0.15 2.38 6.11 -2.91 -0.02 2.36 16 Total: -1.00 -70.78 387.27 1.83 -68.95 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 0.45 Total: 36.51 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.01 Total: 5.53 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -4.64 Total: -91.42 kcal Atomic # 8 Polarization: -62.50 SS G_CDS: -2.02 Total: -64.52 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -70.78 1.83 -68.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592840807.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.921 kcal (2) G-P(sol) polarization free energy of solvation -70.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds