Wall clock time and date at job start Tue Mar 31 2020 16:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47735 * 2 1 4 4 H 1.09004 * 109.47309 * 54.98981 * 3 2 1 5 5 C 1.52989 * 109.47724 * 174.99933 * 3 2 1 6 6 O 1.42897 * 109.47372 * 54.99811 * 5 3 2 7 7 N 1.46504 * 109.46813 * 295.00302 * 3 2 1 8 8 C 1.34774 * 120.00122 * 154.99832 * 7 3 2 9 9 O 1.21597 * 120.00087 * 359.97438 * 8 7 3 10 10 C 1.47521 * 119.99885 * 179.97438 * 8 7 3 11 11 C 1.39792 * 120.07146 * 359.72359 * 10 8 7 12 12 C 1.37615 * 119.93281 * 179.76198 * 11 10 8 13 13 C 1.39219 * 120.06631 * 0.49117 * 12 11 10 14 14 N 1.39044 * 119.92737 * 179.76074 * 13 12 11 15 15 C 1.46499 * 120.00304 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.47349 * 180.72964 * 15 14 13 17 17 C 1.50704 * 115.55299 * 65.12135 * 16 15 14 18 18 H 1.07990 * 120.00008 * 265.35623 * 17 16 15 19 19 C 1.37876 * 119.99547 * 85.34537 * 17 16 15 20 20 N 1.31512 * 120.00181 * 353.37074 * 19 17 16 21 21 Si 1.86801 * 119.99728 * 173.36071 * 19 17 16 22 22 H 1.48497 * 109.47099 * 90.00422 * 21 19 17 23 23 H 1.48501 * 109.46958 * 210.00247 * 21 19 17 24 24 H 1.48500 * 109.47205 * 330.00506 * 21 19 17 25 25 C 1.53002 * 117.49532 * 279.45622 * 16 15 14 26 26 C 1.53005 * 117.49962 * 210.80015 * 16 15 14 27 27 C 1.39210 * 120.13719 * 359.78614 * 13 12 11 28 28 C 1.37611 * 120.07257 * 359.95285 * 27 13 12 29 29 H 1.09003 * 109.47042 * 60.00110 * 1 2 3 30 30 H 1.08999 * 109.47377 * 300.00920 * 1 2 3 31 31 H 1.08996 * 109.47788 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47042 * 119.99890 * 2 1 3 33 33 H 1.09004 * 109.47146 * 239.99495 * 2 1 3 34 34 H 1.09006 * 109.47215 * 175.00052 * 5 3 2 35 35 H 1.09000 * 109.46888 * 294.99941 * 5 3 2 36 36 H 0.96702 * 114.00402 * 180.02562 * 6 5 3 37 37 H 0.97003 * 119.99942 * 334.99289 * 7 3 2 38 38 H 1.08003 * 120.03218 * 359.97438 * 11 10 8 39 39 H 1.07997 * 119.96598 * 180.22726 * 12 11 10 40 40 H 0.97005 * 120.00102 * 180.02562 * 14 13 12 41 41 H 1.08998 * 109.47256 * 300.72761 * 15 14 13 42 42 H 1.09004 * 109.46818 * 60.73197 * 15 14 13 43 43 H 0.97001 * 120.00543 * 185.06369 * 20 19 17 44 44 H 1.08996 * 117.50089 * 359.97438 * 25 16 15 45 45 H 1.09006 * 117.50103 * 145.02013 * 25 16 15 46 46 H 1.08996 * 117.49563 * 214.97581 * 26 16 15 47 47 H 1.08994 * 117.49648 * 359.96701 * 26 16 15 48 48 H 1.08002 * 119.96780 * 179.97438 * 27 13 12 49 49 H 1.08005 * 120.03419 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4442 0.1257 6 8 4.1293 0.6403 -0.9120 7 7 1.6524 2.0974 -1.2518 8 6 1.5257 3.4383 -1.2997 9 8 1.7326 4.1045 -0.3037 10 6 1.1360 4.0979 -2.5604 11 6 0.9034 3.3339 -3.7077 12 6 0.5352 3.9517 -4.8810 13 6 0.4042 5.3369 -4.9286 14 7 0.0368 5.9585 -6.1169 15 6 -0.2125 5.1559 -7.3169 16 6 -0.5799 6.0789 -8.4805 17 6 0.5102 7.0134 -8.9382 18 1 0.5565 8.0202 -8.5504 19 6 1.4486 6.5828 -9.8520 20 7 1.4725 5.3220 -10.2256 21 14 2.6858 7.7902 -10.5597 22 1 3.8975 7.8173 -9.7017 23 1 3.0610 7.3669 -11.9328 24 1 2.0826 9.1463 -10.6072 25 6 -2.0215 6.5866 -8.5515 26 6 -1.5323 5.5294 -9.5445 27 6 0.6407 6.1009 -3.7892 28 6 1.0040 5.4886 -2.6116 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5140 0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.9355 2.4654 0.0366 35 1 3.8498 1.0376 1.0960 36 1 5.0951 0.5955 -0.8936 37 1 1.4871 1.5660 -2.0463 38 1 1.0092 2.2597 -3.6725 39 1 0.3518 3.3617 -5.7668 40 1 -0.0544 6.9237 -6.1514 41 1 0.6854 4.5921 -7.5699 42 1 -1.0342 4.4651 -7.1277 43 1 2.1770 5.0029 -10.8111 44 1 -2.7082 6.2628 -7.7694 45 1 -2.1815 7.5964 -8.9296 46 1 -1.3705 5.8441 -10.5755 47 1 -1.8966 4.5103 -9.4157 48 1 0.5387 7.1754 -3.8294 49 1 1.1878 6.0820 -1.7281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594705169.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:55 Heat of formation + Delta-G solvation = -48.828577 kcal Electronic energy + Delta-G solvation = -27915.801670 eV Core-core repulsion = 24035.801054 eV Total energy + Delta-G solvation = -3880.000616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.13659 -38.79019 -37.45744 -36.84635 -35.30352 -34.27489 -32.45143 -32.05953 -30.64253 -29.56334 -28.45108 -26.05323 -25.21725 -23.87580 -22.82160 -22.15899 -21.23696 -20.79395 -20.15380 -19.28838 -17.85832 -17.63260 -16.79480 -16.23174 -16.14129 -15.33964 -14.97366 -14.88701 -14.73705 -14.42453 -14.19096 -14.04036 -13.93280 -13.63622 -13.39906 -13.07985 -13.02082 -12.77415 -12.69981 -12.51898 -12.14388 -11.86293 -11.60033 -11.58694 -11.29240 -11.09936 -11.06367 -11.03356 -10.64309 -10.58667 -10.34899 -10.26196 -9.70897 -9.70658 -9.67323 -9.07635 -8.94619 -8.71666 -8.57654 -8.31619 -6.92220 -6.16843 -4.24908 1.40411 1.77004 3.18471 3.21208 3.22652 3.29119 3.31460 3.99659 4.05709 4.28528 4.29690 4.45792 4.76160 4.88016 5.03584 5.05206 5.11838 5.12723 5.23279 5.24253 5.27156 5.40825 5.48377 5.60691 5.63646 5.69721 5.79190 5.86574 5.90279 6.00250 6.04339 6.20654 6.25208 6.30944 6.41822 6.47986 6.54731 6.61194 6.65745 6.70151 6.74257 6.97116 7.13572 7.28849 7.36443 7.36735 7.61941 7.73528 7.87907 8.24248 8.30695 8.38607 8.75886 9.42510 10.90975 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.002332 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.126801 B =12005.825427 C =12359.836627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C 0.149 3.851 4 H 0.098 0.902 5 C 0.062 3.938 6 O -0.568 6.568 7 N -0.720 5.720 8 C 0.572 3.428 9 O -0.560 6.560 10 C -0.230 4.230 11 C -0.029 4.029 12 C -0.216 4.216 13 C 0.264 3.736 14 N -0.705 5.705 15 C 0.160 3.840 16 C 0.028 3.972 17 C -0.500 4.500 18 H 0.059 0.941 19 C 0.075 3.925 20 N -0.876 5.876 21 Si 0.890 3.110 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.273 1.273 25 C -0.210 4.210 26 C -0.148 4.148 27 C -0.223 4.223 28 C -0.004 4.004 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.377 0.623 37 H 0.401 0.599 38 H 0.116 0.884 39 H 0.127 0.873 40 H 0.404 0.596 41 H 0.071 0.929 42 H 0.033 0.967 43 H 0.262 0.738 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.123 0.877 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.237 -9.769 17.243 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C 0.044 3.956 4 H 0.116 0.884 5 C -0.017 4.017 6 O -0.373 6.373 7 N -0.373 5.373 8 C 0.363 3.637 9 O -0.440 6.440 10 C -0.236 4.236 11 C -0.048 4.048 12 C -0.239 4.239 13 C 0.151 3.849 14 N -0.325 5.325 15 C 0.036 3.964 16 C 0.028 3.972 17 C -0.538 4.538 18 H 0.078 0.922 19 C -0.129 4.129 20 N -0.512 5.512 21 Si 0.717 3.283 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.198 1.198 25 C -0.247 4.247 26 C -0.186 4.186 27 C -0.246 4.246 28 C -0.024 4.024 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.224 0.776 37 H 0.237 0.763 38 H 0.134 0.866 39 H 0.144 0.856 40 H 0.239 0.761 41 H 0.089 0.911 42 H 0.051 0.949 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.097 0.903 46 H 0.102 0.898 47 H 0.083 0.917 48 H 0.141 0.859 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.247 -9.615 17.378 19.862 hybrid contribution 1.316 0.724 -0.810 1.707 sum 1.069 -8.891 16.568 18.833 Atomic orbital electron populations 1.21799 0.95362 1.01678 1.02338 1.21701 0.96147 0.95072 1.03474 1.21048 0.92217 0.93855 0.88470 0.88372 1.22664 0.94429 0.94658 0.89948 1.86459 1.25262 1.72106 1.53512 1.45868 1.71164 1.06996 1.13233 1.18307 0.75654 0.81492 0.88285 1.90709 1.52272 1.64321 1.36709 1.19315 1.16427 0.94385 0.93501 1.20874 0.93898 0.98411 0.91652 1.20576 1.11225 0.92996 0.99088 1.18205 0.88142 0.92110 0.86443 1.45020 1.70236 1.09914 1.07286 1.21121 0.99221 0.92890 0.83147 1.18980 0.88040 0.96790 0.93423 1.20334 1.11224 0.97685 1.24544 0.92243 1.24964 0.97295 0.95165 0.95503 1.69954 1.32474 1.13912 1.34865 0.86626 0.81482 0.81553 0.78615 1.20576 1.21103 1.19810 1.23029 1.00038 0.98718 1.02955 1.22498 1.04524 0.95334 0.96225 1.20514 1.12129 0.99544 0.92408 1.20805 0.91838 0.92914 0.96874 0.92347 0.92709 0.92547 0.90798 0.90487 0.92950 0.93116 0.77592 0.76331 0.86627 0.85556 0.76136 0.91072 0.94853 0.92812 0.91591 0.90331 0.89791 0.91685 0.85926 0.85572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.80 37.15 0.36 -0.80 16 2 C -0.13 -0.97 5.19 -26.74 -0.14 -1.11 16 3 C 0.15 1.46 2.37 -67.94 -0.16 1.30 16 4 H 0.10 1.05 7.58 -51.93 -0.39 0.65 16 5 C 0.06 0.57 6.85 37.15 0.25 0.82 16 6 O -0.57 -5.08 12.83 -35.23 -0.45 -5.53 16 7 N -0.72 -8.17 4.43 -54.85 -0.24 -8.41 16 8 C 0.57 8.32 7.73 -12.48 -0.10 8.23 16 9 O -0.56 -9.65 16.00 5.28 0.08 -9.56 16 10 C -0.23 -3.42 5.88 -104.95 -0.62 -4.04 16 11 C -0.03 -0.40 9.53 -39.23 -0.37 -0.77 16 12 C -0.22 -3.41 9.28 -39.44 -0.37 -3.77 16 13 C 0.26 4.41 6.65 -83.86 -0.56 3.86 16 14 N -0.70 -12.73 5.62 -58.64 -0.33 -13.06 16 15 C 0.16 3.23 4.72 -4.04 -0.02 3.21 16 16 C 0.03 0.63 1.37 -155.65 -0.21 0.42 16 17 C -0.50 -12.53 8.66 -34.44 -0.30 -12.83 16 18 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 19 C 0.07 1.93 5.39 -17.82 -0.10 1.84 16 20 N -0.88 -23.37 12.92 55.43 0.72 -22.65 16 21 Si 0.89 20.27 29.55 -169.99 -5.02 15.25 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.21 -4.19 9.96 -26.69 -0.27 -4.46 16 26 C -0.15 -3.20 9.43 -26.69 -0.25 -3.45 16 27 C -0.22 -3.43 9.87 -39.45 -0.39 -3.82 16 28 C 0.00 -0.07 9.58 -39.23 -0.38 -0.44 16 29 H 0.06 0.49 7.75 -51.93 -0.40 0.08 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.64 7.73 -51.93 -0.40 0.24 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.38 1.93 9.12 45.56 0.42 2.35 16 37 H 0.40 4.03 6.62 -40.82 -0.27 3.76 16 38 H 0.12 1.27 6.39 -52.48 -0.34 0.94 16 39 H 0.13 1.98 6.69 -52.49 -0.35 1.63 16 40 H 0.40 7.17 8.40 -40.82 -0.34 6.83 16 41 H 0.07 1.62 7.90 -51.93 -0.41 1.21 16 42 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 43 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 46 H 0.08 1.96 8.14 -51.93 -0.42 1.54 16 47 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 48 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 49 H 0.13 1.84 7.64 -52.48 -0.40 1.44 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -29.24 406.11 -9.80 -39.05 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -7.08 Total: 14.64 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -3.60 Total: -15.84 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.14 Total: -44.13 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.37 Total: -15.09 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.24 -9.80 -39.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594705169.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.782 kcal (2) G-P(sol) polarization free energy of solvation -29.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds