Wall clock time and date at job start Tue Mar 31 2020 16:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52997 * 109.47735 * 2 1 4 4 H 1.09004 * 109.47309 * 54.98981 * 3 2 1 5 5 C 1.52989 * 109.47724 * 174.99933 * 3 2 1 6 6 O 1.42897 * 109.47372 * 54.99811 * 5 3 2 7 7 N 1.46504 * 109.46813 * 295.00302 * 3 2 1 8 8 C 1.34774 * 120.00122 * 154.99832 * 7 3 2 9 9 O 1.21597 * 120.00087 * 359.97438 * 8 7 3 10 10 C 1.47521 * 119.99885 * 179.97438 * 8 7 3 11 11 C 1.39792 * 120.07146 * 359.72359 * 10 8 7 12 12 C 1.37615 * 119.93281 * 179.76198 * 11 10 8 13 13 C 1.39219 * 120.06631 * 0.49117 * 12 11 10 14 14 N 1.39044 * 119.92737 * 179.76074 * 13 12 11 15 15 C 1.46499 * 120.00304 * 0.02562 * 14 13 12 16 16 C 1.52999 * 109.47349 * 180.72964 * 15 14 13 17 17 C 1.50704 * 115.55299 * 65.12135 * 16 15 14 18 18 H 1.07990 * 120.00008 * 265.35623 * 17 16 15 19 19 C 1.37876 * 119.99547 * 85.34537 * 17 16 15 20 20 N 1.31512 * 120.00181 * 353.37074 * 19 17 16 21 21 Si 1.86801 * 119.99728 * 173.36071 * 19 17 16 22 22 H 1.48497 * 109.47099 * 90.00422 * 21 19 17 23 23 H 1.48501 * 109.46958 * 210.00247 * 21 19 17 24 24 H 1.48500 * 109.47205 * 330.00506 * 21 19 17 25 25 C 1.53002 * 117.49532 * 279.45622 * 16 15 14 26 26 C 1.53005 * 117.49962 * 210.80015 * 16 15 14 27 27 C 1.39210 * 120.13719 * 359.78614 * 13 12 11 28 28 C 1.37611 * 120.07257 * 359.95285 * 27 13 12 29 29 H 1.09003 * 109.47042 * 60.00110 * 1 2 3 30 30 H 1.08999 * 109.47377 * 300.00920 * 1 2 3 31 31 H 1.08996 * 109.47788 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47042 * 119.99890 * 2 1 3 33 33 H 1.09004 * 109.47146 * 239.99495 * 2 1 3 34 34 H 1.09006 * 109.47215 * 175.00052 * 5 3 2 35 35 H 1.09000 * 109.46888 * 294.99941 * 5 3 2 36 36 H 0.96702 * 114.00402 * 180.02562 * 6 5 3 37 37 H 0.97003 * 119.99942 * 334.99289 * 7 3 2 38 38 H 1.08003 * 120.03218 * 359.97438 * 11 10 8 39 39 H 1.07997 * 119.96598 * 180.22726 * 12 11 10 40 40 H 0.97005 * 120.00102 * 180.02562 * 14 13 12 41 41 H 1.08998 * 109.47256 * 300.72761 * 15 14 13 42 42 H 1.09004 * 109.46818 * 60.73197 * 15 14 13 43 43 H 0.97001 * 120.00543 * 185.06369 * 20 19 17 44 44 H 1.08996 * 117.50089 * 359.97438 * 25 16 15 45 45 H 1.09006 * 117.50103 * 145.02013 * 25 16 15 46 46 H 1.08996 * 117.49563 * 214.97581 * 26 16 15 47 47 H 1.08994 * 117.49648 * 359.96701 * 26 16 15 48 48 H 1.08002 * 119.96780 * 179.97438 * 27 13 12 49 49 H 1.08005 * 120.03419 * 179.97438 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5648 1.4442 0.1257 6 8 4.1293 0.6403 -0.9120 7 7 1.6524 2.0974 -1.2518 8 6 1.5257 3.4383 -1.2997 9 8 1.7326 4.1045 -0.3037 10 6 1.1360 4.0979 -2.5604 11 6 0.9034 3.3339 -3.7077 12 6 0.5352 3.9517 -4.8810 13 6 0.4042 5.3369 -4.9286 14 7 0.0368 5.9585 -6.1169 15 6 -0.2125 5.1559 -7.3169 16 6 -0.5799 6.0789 -8.4805 17 6 0.5102 7.0134 -8.9382 18 1 0.5565 8.0202 -8.5504 19 6 1.4486 6.5828 -9.8520 20 7 1.4725 5.3220 -10.2256 21 14 2.6858 7.7902 -10.5597 22 1 3.8975 7.8173 -9.7017 23 1 3.0610 7.3669 -11.9328 24 1 2.0826 9.1463 -10.6072 25 6 -2.0215 6.5866 -8.5515 26 6 -1.5323 5.5294 -9.5445 27 6 0.6407 6.1009 -3.7892 28 6 1.0040 5.4886 -2.6116 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5140 0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.9355 2.4654 0.0366 35 1 3.8498 1.0376 1.0960 36 1 5.0951 0.5955 -0.8936 37 1 1.4871 1.5660 -2.0463 38 1 1.0092 2.2597 -3.6725 39 1 0.3518 3.3617 -5.7668 40 1 -0.0544 6.9237 -6.1514 41 1 0.6854 4.5921 -7.5699 42 1 -1.0342 4.4651 -7.1277 43 1 2.1770 5.0029 -10.8111 44 1 -2.7082 6.2628 -7.7694 45 1 -2.1815 7.5964 -8.9296 46 1 -1.3705 5.8441 -10.5755 47 1 -1.8966 4.5103 -9.4157 48 1 0.5387 7.1754 -3.8294 49 1 1.1878 6.0820 -1.7281 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594705169.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:54 Heat of formation + Delta-G solvation = -67.153312 kcal Electronic energy + Delta-G solvation = -27916.596291 eV Core-core repulsion = 24035.801054 eV Total energy + Delta-G solvation = -3880.795236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.24323 -39.98939 -38.64897 -38.12361 -36.10459 -35.65945 -33.99518 -33.35480 -31.80128 -30.70489 -29.36943 -27.76147 -26.84131 -24.65160 -23.96099 -23.31570 -22.88080 -21.71824 -21.26603 -20.99512 -18.90024 -18.50550 -18.19634 -17.75417 -17.13670 -16.66805 -16.34497 -16.25783 -15.92632 -15.66635 -15.25767 -15.10422 -15.08150 -14.68088 -14.60173 -14.43199 -14.25879 -14.16047 -13.59371 -13.53347 -13.28337 -13.20934 -13.15086 -12.92558 -12.85526 -12.37843 -12.29637 -12.05559 -11.96264 -11.84781 -11.74185 -11.43278 -11.13235 -11.03257 -10.79055 -10.69634 -10.45451 -10.05678 -10.02182 -9.91236 -8.26055 -8.11740 -6.23366 0.19173 0.56560 1.38932 1.42753 1.49630 2.01107 2.26541 2.39966 2.60384 3.07130 3.16617 3.42717 3.53846 3.74502 3.92521 3.99178 4.07059 4.07751 4.23620 4.26442 4.46123 4.48409 4.53960 4.55374 4.59111 4.64962 4.70322 4.73083 4.76611 4.79349 4.94591 4.99216 5.03801 5.10599 5.12057 5.23003 5.27191 5.35936 5.43395 5.44723 5.51517 5.60990 5.61714 5.62966 5.76575 5.92010 6.34928 6.50482 6.61969 6.81282 6.87062 6.94400 7.30079 7.45413 8.94800 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016004 B = 0.002332 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.126801 B =12005.825427 C =12359.836627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C 0.142 3.858 4 H 0.089 0.911 5 C 0.066 3.934 6 O -0.580 6.580 7 N -0.707 5.707 8 C 0.570 3.430 9 O -0.591 6.591 10 C -0.233 4.233 11 C -0.019 4.019 12 C -0.226 4.226 13 C 0.246 3.754 14 N -0.711 5.711 15 C 0.179 3.821 16 C 0.006 3.994 17 C -0.506 4.506 18 H 0.054 0.946 19 C 0.031 3.969 20 N -0.902 5.902 21 Si 0.942 3.058 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.270 1.270 25 C -0.183 4.183 26 C -0.156 4.156 27 C -0.220 4.220 28 C -0.013 4.013 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.394 0.606 37 H 0.408 0.592 38 H 0.146 0.854 39 H 0.125 0.875 40 H 0.403 0.597 41 H 0.039 0.961 42 H 0.046 0.954 43 H 0.260 0.740 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.060 0.940 47 H 0.078 0.922 48 H 0.136 0.864 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.120 -10.767 18.565 21.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.038 3.962 4 H 0.106 0.894 5 C -0.013 4.013 6 O -0.387 6.387 7 N -0.358 5.358 8 C 0.360 3.640 9 O -0.473 6.473 10 C -0.238 4.238 11 C -0.039 4.039 12 C -0.249 4.249 13 C 0.135 3.865 14 N -0.332 5.332 15 C 0.055 3.945 16 C 0.005 3.995 17 C -0.544 4.544 18 H 0.072 0.928 19 C -0.170 4.170 20 N -0.539 5.539 21 Si 0.769 3.231 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.195 1.195 25 C -0.221 4.221 26 C -0.194 4.194 27 C -0.243 4.243 28 C -0.033 4.033 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.243 0.757 37 H 0.245 0.755 38 H 0.164 0.836 39 H 0.143 0.857 40 H 0.238 0.762 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.096 0.904 48 H 0.154 0.846 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.351 -10.642 18.718 21.535 hybrid contribution 1.374 0.985 -1.119 2.027 sum 1.023 -9.657 17.600 20.101 Atomic orbital electron populations 1.21800 0.95260 1.02331 1.01768 1.21645 0.96111 0.93450 1.04189 1.21246 0.92957 0.94827 0.87214 0.89350 1.22567 0.93752 0.93693 0.91248 1.86410 1.26969 1.71784 1.53570 1.45822 1.69738 1.06003 1.14256 1.18291 0.75599 0.82396 0.87670 1.90694 1.53869 1.65205 1.37576 1.19532 1.15717 0.94544 0.94043 1.21096 0.92452 0.99859 0.90469 1.20710 1.11600 0.92817 0.99726 1.18395 0.89049 0.92701 0.86316 1.44817 1.71694 1.09641 1.07085 1.20700 0.98050 0.92450 0.83286 1.19052 0.88510 0.97459 0.94436 1.20615 1.11821 0.97901 1.24086 0.92820 1.25565 0.99001 0.96330 0.96131 1.70045 1.33123 1.15077 1.35687 0.85807 0.79623 0.79995 0.77722 1.20683 1.21246 1.19458 1.22999 0.98653 0.98128 1.02270 1.22435 1.05217 0.96590 0.95131 1.20640 1.11457 1.00244 0.91945 1.20945 0.91965 0.93390 0.96965 0.93261 0.92947 0.91305 0.89126 0.90625 0.95280 0.90651 0.75672 0.75451 0.83650 0.85721 0.76162 0.94282 0.93589 0.93120 0.89168 0.90398 0.92170 0.90401 0.84642 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.80 71.98 0.71 -1.31 16 2 C -0.12 -1.52 5.19 30.59 0.16 -1.36 16 3 C 0.14 2.55 2.37 44.99 0.11 2.66 16 4 H 0.09 1.79 7.58 -2.38 -0.02 1.77 16 5 C 0.07 1.10 6.85 71.98 0.49 1.59 16 6 O -0.58 -9.13 12.83 -148.98 -1.91 -11.04 16 7 N -0.71 -14.98 4.43 -445.72 -1.97 -16.95 16 8 C 0.57 16.06 7.73 86.69 0.67 16.73 16 9 O -0.59 -20.16 16.00 -4.02 -0.06 -20.23 16 10 C -0.23 -6.66 5.88 -20.08 -0.12 -6.77 16 11 C -0.02 -0.51 9.53 22.50 0.21 -0.29 16 12 C -0.23 -6.91 9.28 22.36 0.21 -6.71 16 13 C 0.25 8.07 6.65 38.47 0.26 8.33 16 14 N -0.71 -25.39 5.62 -339.44 -1.91 -27.30 16 15 C 0.18 7.22 4.72 86.38 0.41 7.62 16 16 C 0.01 0.27 1.37 -52.92 -0.07 0.20 16 17 C -0.51 -25.46 8.66 25.60 0.22 -25.24 16 18 H 0.05 2.69 7.82 -2.92 -0.02 2.67 16 19 C 0.03 1.60 5.39 84.65 0.46 2.06 16 20 N -0.90 -48.82 12.92 21.45 0.28 -48.54 16 21 Si 0.94 41.92 29.55 68.60 2.03 43.94 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C -0.18 -7.05 9.96 30.62 0.30 -6.74 16 26 C -0.16 -6.69 9.43 30.62 0.29 -6.40 16 27 C -0.22 -6.59 9.87 22.36 0.22 -6.37 16 28 C -0.01 -0.38 9.58 22.50 0.22 -0.16 16 29 H 0.05 0.73 7.75 -2.39 -0.02 0.71 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.05 7.73 -2.38 -0.02 1.03 16 34 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.39 3.21 9.12 -74.06 -0.68 2.54 16 37 H 0.41 7.35 6.62 -92.71 -0.61 6.74 16 38 H 0.15 2.84 6.39 -2.91 -0.02 2.82 16 39 H 0.12 3.84 6.69 -2.91 -0.02 3.82 16 40 H 0.40 14.17 8.40 -92.70 -0.78 13.40 16 41 H 0.04 1.81 7.90 -2.39 -0.02 1.79 16 42 H 0.05 1.70 7.92 -2.39 -0.02 1.69 16 43 H 0.26 13.61 8.32 -92.71 -0.77 12.84 16 44 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 45 H 0.08 3.00 8.14 -2.38 -0.02 2.98 16 46 H 0.06 2.85 8.14 -2.39 -0.02 2.83 16 47 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 48 H 0.14 3.62 8.06 -2.91 -0.02 3.59 16 49 H 0.13 3.73 7.64 -2.91 -0.02 3.70 16 Total: -1.00 -62.39 406.11 0.09 -62.30 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: -1.09 Total: 40.00 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 4.74 Total: -22.18 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -3.60 Total: -92.79 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.98 Total: -31.26 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.94 kcal Total: -62.39 0.09 -62.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594705169.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.855 kcal (2) G-P(sol) polarization free energy of solvation -62.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds