Wall clock time and date at job start Tue Mar 31 2020 16:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 N 1.46507 * 109.47022 * 119.99781 * 2 1 3 5 5 C 1.46501 * 119.99915 * 304.78265 * 4 2 1 6 6 C 1.50699 * 109.46759 * 263.00841 * 5 4 2 7 7 H 1.08007 * 120.00213 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00073 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00424 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99993 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47159 * 89.99972 * 10 8 6 12 12 H 1.48502 * 109.47172 * 210.00184 * 10 8 6 13 13 H 1.48506 * 109.46833 * 330.00052 * 10 8 6 14 14 C 1.34779 * 119.99841 * 124.77785 * 4 2 1 15 15 O 1.21344 * 119.99943 * 3.72989 * 14 4 2 16 16 C 1.49451 * 119.99579 * 183.73705 * 14 4 2 17 17 O 1.21340 * 120.00350 * 354.28962 * 16 14 4 18 18 N 1.34780 * 119.99596 * 174.29430 * 16 14 4 19 19 C 1.46496 * 119.99882 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.47403 * 180.02562 * 19 18 16 21 21 C 1.52994 * 109.47521 * 179.97438 * 20 19 18 22 22 C 1.50698 * 109.47546 * 179.97438 * 21 20 19 23 23 C 1.38229 * 119.99854 * 89.99524 * 22 21 20 24 24 C 1.38235 * 120.00134 * 179.97438 * 23 22 21 25 25 C 1.38238 * 119.99724 * 359.97438 * 24 23 22 26 26 C 1.38233 * 120.00028 * 0.27464 * 25 24 23 27 27 C 1.38232 * 120.00137 * 359.51767 * 26 25 24 28 28 H 1.08999 * 109.46856 * 300.00189 * 1 2 3 29 29 H 1.09005 * 109.46639 * 59.99998 * 1 2 3 30 30 H 1.08996 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47337 * 240.00033 * 2 1 3 32 32 H 1.09004 * 109.47403 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47320 * 299.99859 * 3 2 1 34 34 H 1.09006 * 109.47509 * 59.99758 * 3 2 1 35 35 H 1.08994 * 109.46981 * 23.00423 * 5 4 2 36 36 H 1.08995 * 109.47263 * 143.00938 * 5 4 2 37 37 H 0.96995 * 120.00424 * 179.97438 * 9 8 6 38 38 H 0.96996 * 120.00009 * 0.02562 * 18 16 14 39 39 H 1.08996 * 109.47275 * 59.99996 * 19 18 16 40 40 H 1.09004 * 109.46844 * 299.99965 * 19 18 16 41 41 H 1.09002 * 109.47028 * 59.99212 * 20 19 18 42 42 H 1.09001 * 109.46430 * 299.99771 * 20 19 18 43 43 H 1.08999 * 109.46801 * 59.99395 * 21 20 19 44 44 H 1.08996 * 109.47027 * 300.00151 * 21 20 19 45 45 H 1.07995 * 120.00532 * 359.97438 * 23 22 21 46 46 H 1.07993 * 120.00403 * 180.02562 * 24 23 22 47 47 H 1.08007 * 119.99941 * 180.02562 * 25 24 23 48 48 H 1.08003 * 120.00093 * 179.72284 * 26 25 24 49 49 H 1.07998 * 120.00559 * 180.27439 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 1.5801 -0.2540 2.5243 6 6 2.6184 0.6615 3.1200 7 1 3.5148 0.8952 2.5647 8 6 2.4239 1.2009 4.3738 9 7 3.3302 1.9995 4.8940 10 14 0.8732 0.7974 5.3340 11 1 1.1050 -0.4129 6.1627 12 1 0.5246 1.9411 6.2147 13 1 -0.2427 0.5432 4.3878 14 6 2.8707 -1.7276 1.0750 15 8 3.2865 -2.0463 -0.0195 16 6 3.3034 -2.4850 2.2885 17 8 2.9713 -2.1043 3.3917 18 7 4.0626 -3.5908 2.1574 19 6 4.4873 -4.3330 3.3469 20 6 5.3326 -5.5358 2.9230 21 6 5.7766 -6.3105 4.1653 22 6 6.6087 -7.4955 3.7476 23 6 7.9792 -7.3676 3.6212 24 6 8.7425 -8.4547 3.2386 25 6 8.1353 -9.6699 2.9830 26 6 6.7641 -9.7965 3.1045 27 6 6.0013 -8.7106 3.4912 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.6331 0.2784 2.4375 36 1 1.4503 -1.1238 3.1682 37 1 3.1933 2.3792 5.7759 38 1 4.3285 -3.8949 1.2755 39 1 3.6092 -4.6795 3.8917 40 1 5.0797 -3.6814 3.9894 41 1 6.2107 -5.1888 2.3783 42 1 4.7405 -6.1874 2.2803 43 1 4.8987 -6.6573 4.7102 44 1 6.3687 -5.6586 4.8075 45 1 8.4537 -6.4183 3.8213 46 1 9.8133 -8.3549 3.1402 47 1 8.7317 -10.5195 2.6845 48 1 6.2891 -10.7448 2.9004 49 1 4.9305 -8.8106 3.5904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609156856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:35 Heat of formation + Delta-G solvation = -44.477188 kcal Electronic energy + Delta-G solvation = -28138.151092 eV Core-core repulsion = 24258.339167 eV Total energy + Delta-G solvation = -3879.811926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.15307 -39.54745 -38.09904 -36.25298 -35.68679 -33.50499 -32.67477 -31.33882 -31.12829 -30.27981 -27.82045 -26.74412 -26.44757 -24.03808 -22.81511 -22.51922 -22.08131 -21.13352 -20.31444 -18.75703 -17.09836 -16.95201 -16.89463 -16.49335 -15.96653 -15.62755 -15.24211 -15.12895 -14.62323 -14.57291 -13.93007 -13.72296 -13.64767 -13.54082 -13.36681 -13.27525 -13.10915 -12.55970 -12.47179 -12.22445 -12.14033 -11.88002 -11.76772 -11.72931 -11.64883 -11.33654 -11.07119 -11.04523 -10.89291 -10.87639 -10.68880 -10.35473 -10.21165 -10.05061 -9.41597 -9.16613 -8.95177 -8.81339 -8.66432 -8.38590 -7.81204 -6.00995 -3.97017 1.10514 1.15629 2.17944 2.95672 3.34721 3.39488 3.42641 3.54092 3.93275 4.13439 4.46700 4.47377 4.57773 4.75486 4.86771 4.88513 4.98399 5.08282 5.18080 5.25114 5.28343 5.32689 5.38714 5.50333 5.50613 5.54947 5.69766 5.73036 5.79972 5.84316 5.99967 6.01048 6.07183 6.09707 6.22329 6.24312 6.26952 6.32376 6.41615 6.55185 6.61093 6.65015 6.76769 6.95615 7.07697 7.24673 7.63071 7.66736 8.01646 8.38282 8.56373 8.74422 9.01237 9.60225 11.12510 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.002493 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.290823 B =11228.985780 C =12353.051598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 C -0.154 4.154 4 N -0.552 5.552 5 C 0.191 3.809 6 C -0.509 4.509 7 H 0.072 0.928 8 C 0.077 3.923 9 N -0.901 5.901 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.289 1.289 13 H -0.268 1.268 14 C 0.509 3.491 15 O -0.561 6.561 16 C 0.497 3.503 17 O -0.467 6.467 18 N -0.718 5.718 19 C 0.120 3.880 20 C -0.124 4.124 21 C -0.080 4.080 22 C -0.078 4.078 23 C -0.117 4.117 24 C -0.119 4.119 25 C -0.128 4.128 26 C -0.120 4.120 27 C -0.118 4.118 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.065 0.935 37 H 0.262 0.738 38 H 0.406 0.594 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.120 0.880 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -19.337 -5.043 20.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.029 3.971 3 C -0.212 4.212 4 N -0.282 5.282 5 C 0.071 3.929 6 C -0.547 4.547 7 H 0.090 0.910 8 C -0.125 4.125 9 N -0.540 5.540 10 Si 0.702 3.298 11 H -0.199 1.199 12 H -0.215 1.215 13 H -0.193 1.193 14 C 0.292 3.708 15 O -0.443 6.443 16 C 0.278 3.722 17 O -0.337 6.337 18 N -0.374 5.374 19 C -0.003 4.003 20 C -0.162 4.162 21 C -0.117 4.117 22 C -0.078 4.078 23 C -0.135 4.135 24 C -0.137 4.137 25 C -0.146 4.146 26 C -0.138 4.138 27 C -0.136 4.136 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.048 0.952 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.241 0.759 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.141 0.859 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.659 -19.055 -4.590 19.939 hybrid contribution -0.458 -0.216 0.317 0.598 sum 3.200 -19.272 -4.273 19.997 Atomic orbital electron populations 1.22150 0.95240 1.01877 1.02529 1.21048 0.93734 0.93958 0.88375 1.22075 1.01789 0.95153 1.02181 1.48026 1.42229 1.28525 1.09446 1.20422 0.96230 0.97695 0.78588 1.21111 1.05452 1.26372 1.01769 0.91010 1.24735 0.96248 0.94577 0.96897 1.69890 1.34524 1.32472 1.17098 0.86888 0.84091 0.78181 0.80681 1.19873 1.21513 1.19277 1.19955 0.80379 0.81889 0.88592 1.90630 1.56498 1.69355 1.27768 1.20186 0.80401 0.81385 0.90260 1.90842 1.51466 1.64765 1.26672 1.45698 1.53792 1.27543 1.10395 1.21356 0.98632 0.92498 0.87826 1.21761 1.00212 0.96199 0.98004 1.20536 0.99393 0.94350 0.97469 1.19915 0.94013 0.95007 0.98846 1.21122 0.93468 0.98931 0.99945 1.21164 0.99878 0.93143 0.99533 1.21147 0.94966 0.97667 1.00826 1.21149 0.94120 0.98702 0.99828 1.21094 0.99926 0.92635 0.99901 0.91523 0.91740 0.92811 0.89131 0.92486 0.92850 0.90470 0.95237 0.91744 0.92780 0.75929 0.91360 0.90998 0.90930 0.91083 0.90461 0.90307 0.85913 0.86148 0.86310 0.86203 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.10 37.16 0.34 -2.07 16 2 C 0.13 2.37 3.24 -67.93 -0.22 2.15 16 3 C -0.15 -2.75 8.93 37.16 0.33 -2.41 16 4 N -0.55 -11.68 2.38 -167.97 -0.40 -12.08 16 5 C 0.19 4.51 3.18 -5.19 -0.02 4.49 16 6 C -0.51 -14.10 7.94 -34.44 -0.27 -14.37 16 7 H 0.07 2.22 8.06 -52.48 -0.42 1.79 16 8 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 9 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 10 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 11 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 13 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 14 C 0.51 10.71 7.67 -11.58 -0.09 10.62 16 15 O -0.56 -11.82 15.84 5.50 0.09 -11.74 16 16 C 0.50 10.03 7.77 -11.58 -0.09 9.94 16 17 O -0.47 -10.94 12.37 5.51 0.07 -10.87 16 18 N -0.72 -11.16 5.55 -60.73 -0.34 -11.49 16 19 C 0.12 1.55 5.67 -4.04 -0.02 1.53 16 20 C -0.12 -1.18 5.31 -26.73 -0.14 -1.33 16 21 C -0.08 -0.69 5.34 -27.89 -0.15 -0.84 16 22 C -0.08 -0.71 5.13 -104.62 -0.54 -1.25 16 23 C -0.12 -1.05 9.70 -39.59 -0.38 -1.43 16 24 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 25 C -0.13 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 27 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 28 H 0.07 1.07 6.50 -51.93 -0.34 0.73 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.09 1.60 6.93 -51.93 -0.36 1.24 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.54 7.31 -51.93 -0.38 1.16 16 35 H 0.03 0.68 5.25 -51.93 -0.27 0.41 16 36 H 0.07 1.60 4.85 -51.93 -0.25 1.35 16 37 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 38 H 0.41 5.61 7.96 -40.82 -0.32 5.29 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 44 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 47 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 48 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 49 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -33.22 399.37 -9.24 -42.46 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -7.85 Total: 5.97 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: -2.93 Total: 1.57 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.04 Total: -50.35 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: 0.16 Total: -22.61 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.22 -9.24 -42.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609156856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.019 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds