Wall clock time and date at job start Tue Mar 31 2020 16:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47321 * 2 1 4 4 N 1.46507 * 109.47022 * 119.99781 * 2 1 3 5 5 C 1.46501 * 119.99915 * 304.78265 * 4 2 1 6 6 C 1.50699 * 109.46759 * 263.00841 * 5 4 2 7 7 H 1.08007 * 120.00213 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00073 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00424 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99993 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47159 * 89.99972 * 10 8 6 12 12 H 1.48502 * 109.47172 * 210.00184 * 10 8 6 13 13 H 1.48506 * 109.46833 * 330.00052 * 10 8 6 14 14 C 1.34779 * 119.99841 * 124.77785 * 4 2 1 15 15 O 1.21344 * 119.99943 * 3.72989 * 14 4 2 16 16 C 1.49451 * 119.99579 * 183.73705 * 14 4 2 17 17 O 1.21340 * 120.00350 * 354.28962 * 16 14 4 18 18 N 1.34780 * 119.99596 * 174.29430 * 16 14 4 19 19 C 1.46496 * 119.99882 * 179.97438 * 18 16 14 20 20 C 1.53002 * 109.47403 * 180.02562 * 19 18 16 21 21 C 1.52994 * 109.47521 * 179.97438 * 20 19 18 22 22 C 1.50698 * 109.47546 * 179.97438 * 21 20 19 23 23 C 1.38229 * 119.99854 * 89.99524 * 22 21 20 24 24 C 1.38235 * 120.00134 * 179.97438 * 23 22 21 25 25 C 1.38238 * 119.99724 * 359.97438 * 24 23 22 26 26 C 1.38233 * 120.00028 * 0.27464 * 25 24 23 27 27 C 1.38232 * 120.00137 * 359.51767 * 26 25 24 28 28 H 1.08999 * 109.46856 * 300.00189 * 1 2 3 29 29 H 1.09005 * 109.46639 * 59.99998 * 1 2 3 30 30 H 1.08996 * 109.47123 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47337 * 240.00033 * 2 1 3 32 32 H 1.09004 * 109.47403 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47320 * 299.99859 * 3 2 1 34 34 H 1.09006 * 109.47509 * 59.99758 * 3 2 1 35 35 H 1.08994 * 109.46981 * 23.00423 * 5 4 2 36 36 H 1.08995 * 109.47263 * 143.00938 * 5 4 2 37 37 H 0.96995 * 120.00424 * 179.97438 * 9 8 6 38 38 H 0.96996 * 120.00009 * 0.02562 * 18 16 14 39 39 H 1.08996 * 109.47275 * 59.99996 * 19 18 16 40 40 H 1.09004 * 109.46844 * 299.99965 * 19 18 16 41 41 H 1.09002 * 109.47028 * 59.99212 * 20 19 18 42 42 H 1.09001 * 109.46430 * 299.99771 * 20 19 18 43 43 H 1.08999 * 109.46801 * 59.99395 * 21 20 19 44 44 H 1.08996 * 109.47027 * 300.00151 * 21 20 19 45 45 H 1.07995 * 120.00532 * 359.97438 * 23 22 21 46 46 H 1.07993 * 120.00403 * 180.02562 * 24 23 22 47 47 H 1.08007 * 119.99941 * 180.02562 * 25 24 23 48 48 H 1.08003 * 120.00093 * 179.72284 * 26 25 24 49 49 H 1.07998 * 120.00559 * 180.27439 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0184 -0.6906 1.1963 5 6 1.5801 -0.2540 2.5243 6 6 2.6184 0.6615 3.1200 7 1 3.5148 0.8952 2.5647 8 6 2.4239 1.2009 4.3738 9 7 3.3302 1.9995 4.8940 10 14 0.8732 0.7974 5.3340 11 1 1.1050 -0.4129 6.1627 12 1 0.5246 1.9411 6.2147 13 1 -0.2427 0.5432 4.3878 14 6 2.8707 -1.7276 1.0750 15 8 3.2865 -2.0463 -0.0195 16 6 3.3034 -2.4850 2.2885 17 8 2.9713 -2.1043 3.3917 18 7 4.0626 -3.5908 2.1574 19 6 4.4873 -4.3330 3.3469 20 6 5.3326 -5.5358 2.9230 21 6 5.7766 -6.3105 4.1653 22 6 6.6087 -7.4955 3.7476 23 6 7.9792 -7.3676 3.6212 24 6 8.7425 -8.4547 3.2386 25 6 8.1353 -9.6699 2.9830 26 6 6.7641 -9.7965 3.1045 27 6 6.0013 -8.7106 3.4912 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 0.6331 0.2784 2.4375 36 1 1.4503 -1.1238 3.1682 37 1 3.1933 2.3792 5.7759 38 1 4.3285 -3.8949 1.2755 39 1 3.6092 -4.6795 3.8917 40 1 5.0797 -3.6814 3.9894 41 1 6.2107 -5.1888 2.3783 42 1 4.7405 -6.1874 2.2803 43 1 4.8987 -6.6573 4.7102 44 1 6.3687 -5.6586 4.8075 45 1 8.4537 -6.4183 3.8213 46 1 9.8133 -8.3549 3.1402 47 1 8.7317 -10.5195 2.6845 48 1 6.2891 -10.7448 2.9004 49 1 4.9305 -8.8106 3.5904 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609156856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:35 Heat of formation + Delta-G solvation = -64.614391 kcal Electronic energy + Delta-G solvation = -28139.024307 eV Core-core repulsion = 24258.339167 eV Total energy + Delta-G solvation = -3880.685140 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.76133 -40.20401 -39.62436 -37.86100 -36.83648 -34.77013 -34.50453 -33.01409 -31.73285 -31.18033 -29.79843 -28.07182 -27.51194 -25.33603 -24.50013 -23.42609 -23.06809 -22.07680 -21.54577 -20.28924 -19.04199 -18.61114 -18.14237 -17.64865 -17.08776 -16.81739 -16.48799 -16.34843 -15.98472 -15.72129 -15.51246 -15.06365 -14.90896 -14.77778 -14.48240 -14.27958 -14.22347 -13.96839 -13.86734 -13.67383 -13.37414 -13.22297 -13.01905 -12.93395 -12.74975 -12.64721 -12.53403 -12.33036 -12.11100 -12.02807 -11.92348 -11.74908 -11.69975 -11.61876 -11.50679 -10.74436 -10.23336 -10.16223 -9.78902 -9.57555 -9.54316 -8.22052 -6.21950 0.46990 0.53237 0.53316 1.36338 1.42970 1.46902 1.52154 2.29689 2.40109 2.63330 2.91996 3.15254 3.49896 3.68508 3.91519 3.98924 4.13547 4.17635 4.20378 4.25347 4.30595 4.35869 4.37247 4.50706 4.55486 4.64599 4.70439 4.78644 4.80505 4.84761 4.85149 4.92903 4.97599 5.06758 5.10194 5.16489 5.23639 5.26492 5.33877 5.41120 5.43620 5.54895 5.59363 5.61526 5.66244 5.76727 6.14982 6.16502 6.21256 6.46240 6.74810 6.86060 7.15372 7.38873 8.95168 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014317 B = 0.002493 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.290823 B =11228.985780 C =12353.051598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.123 3.877 3 C -0.147 4.147 4 N -0.559 5.559 5 C 0.204 3.796 6 C -0.497 4.497 7 H 0.024 0.976 8 C 0.017 3.983 9 N -0.951 5.951 10 Si 0.938 3.062 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.238 1.238 14 C 0.502 3.498 15 O -0.564 6.564 16 C 0.492 3.508 17 O -0.508 6.508 18 N -0.698 5.698 19 C 0.119 3.881 20 C -0.109 4.109 21 C -0.075 4.075 22 C -0.090 4.090 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.135 4.135 26 C -0.128 4.128 27 C -0.128 4.128 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.028 0.972 33 H 0.092 0.908 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.062 0.938 37 H 0.263 0.737 38 H 0.416 0.584 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.126 0.874 46 H 0.135 0.865 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 -21.290 -6.066 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.021 3.979 3 C -0.205 4.205 4 N -0.289 5.289 5 C 0.083 3.917 6 C -0.536 4.536 7 H 0.042 0.958 8 C -0.180 4.180 9 N -0.593 5.593 10 Si 0.762 3.238 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.161 1.161 14 C 0.285 3.715 15 O -0.445 6.445 16 C 0.273 3.727 17 O -0.382 6.382 18 N -0.353 5.353 19 C -0.004 4.004 20 C -0.147 4.147 21 C -0.113 4.113 22 C -0.090 4.090 23 C -0.151 4.151 24 C -0.147 4.147 25 C -0.153 4.153 26 C -0.146 4.146 27 C -0.146 4.146 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.114 0.886 32 H 0.048 0.952 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.253 0.747 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.095 0.905 45 H 0.144 0.856 46 H 0.153 0.847 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.071 -21.047 -5.674 21.896 hybrid contribution 0.198 0.334 0.522 0.650 sum 2.269 -20.713 -5.152 21.464 Atomic orbital electron populations 1.22105 0.92401 1.02767 1.03692 1.21369 0.96014 0.93323 0.87198 1.22014 0.99968 0.95637 1.02854 1.48111 1.42399 1.28830 1.09556 1.20097 0.95269 0.96632 0.79685 1.21199 1.04600 1.26435 1.01367 0.95779 1.25607 0.99779 0.94513 0.98104 1.70046 1.37087 1.34382 1.17751 0.85865 0.80768 0.77680 0.79523 1.20194 1.21032 1.16126 1.20220 0.80252 0.82122 0.88956 1.90613 1.56475 1.69579 1.27855 1.20228 0.80808 0.82220 0.89445 1.90815 1.53619 1.66140 1.27649 1.45691 1.51693 1.25979 1.11909 1.21538 0.99076 0.93061 0.86722 1.21653 0.99639 0.94810 0.98615 1.20483 0.99679 0.94217 0.96922 1.19979 0.94165 0.95300 0.99559 1.21311 0.93760 0.99526 1.00456 1.21432 1.00787 0.93183 0.99321 1.21465 0.95319 0.98188 1.00301 1.21454 0.94364 0.99380 0.99365 1.21322 1.00716 0.92665 0.99923 0.92492 0.88386 0.92059 0.88586 0.95235 0.88891 0.92954 0.93700 0.92022 0.92772 0.74737 0.90988 0.92497 0.90873 0.89943 0.89729 0.90520 0.85583 0.84685 0.84385 0.84353 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 9.10 71.98 0.65 -3.46 16 2 C 0.12 4.24 3.24 44.99 0.15 4.38 16 3 C -0.15 -5.16 8.93 71.98 0.64 -4.52 16 4 N -0.56 -23.48 2.38 -803.71 -1.91 -25.39 16 5 C 0.20 9.61 3.18 85.63 0.27 9.89 16 6 C -0.50 -28.36 7.94 25.60 0.20 -28.16 16 7 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 8 C 0.02 0.99 5.47 84.65 0.46 1.45 16 9 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 10 Si 0.94 44.55 27.47 68.60 1.88 46.44 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 13 H -0.24 -10.07 6.54 99.48 0.65 -9.42 16 14 C 0.50 21.05 7.67 87.27 0.67 21.72 16 15 O -0.56 -23.37 15.84 -3.23 -0.05 -23.42 16 16 C 0.49 20.00 7.77 87.27 0.68 20.67 16 17 O -0.51 -24.18 12.37 -3.22 -0.04 -24.22 16 18 N -0.70 -21.37 5.55 -464.42 -2.58 -23.95 16 19 C 0.12 3.01 5.67 86.38 0.49 3.50 16 20 C -0.11 -1.96 5.31 30.59 0.16 -1.80 16 21 C -0.08 -1.24 5.34 29.85 0.16 -1.08 16 22 C -0.09 -1.55 5.13 -19.87 -0.10 -1.65 16 23 C -0.13 -2.28 9.70 22.27 0.22 -2.07 16 24 C -0.13 -2.00 10.05 22.27 0.22 -1.77 16 25 C -0.13 -1.92 10.05 22.27 0.22 -1.70 16 26 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 27 C -0.13 -2.04 9.70 22.27 0.22 -1.82 16 28 H 0.06 1.66 6.50 -2.39 -0.02 1.64 16 29 H 0.10 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 3.22 6.93 -2.39 -0.02 3.21 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.05 2.09 7.31 -2.38 -0.02 2.07 16 35 H 0.05 1.99 5.25 -2.39 -0.01 1.98 16 36 H 0.06 3.02 4.85 -2.39 -0.01 3.01 16 37 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 38 H 0.42 11.08 7.96 -92.71 -0.74 10.34 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 1.64 8.14 -2.38 -0.02 1.63 16 41 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.08 1.26 8.08 -2.39 -0.02 1.24 16 44 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 45 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 46 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 47 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 48 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 49 H 0.13 1.71 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -74.01 399.37 3.30 -70.72 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.15 Total: 27.74 kcal Atomic # 6 Polarization: 6.43 SS G_CDS: 5.54 Total: 11.98 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -4.19 Total: -109.23 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -0.09 Total: -47.64 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.88 Total: 46.44 kcal Total: -74.01 3.30 -70.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609156856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.102 kcal (2) G-P(sol) polarization free energy of solvation -74.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds