Wall clock time and date at job start Tue Mar 31 2020 16:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 N 1.46906 * 109.47087 * 119.99926 * 2 1 3 5 5 C 1.46902 * 110.99903 * 155.00258 * 4 2 1 6 6 H 1.08996 * 109.49977 * 35.06225 * 5 4 2 7 7 C 1.53042 * 109.49659 * 155.16210 * 5 4 2 8 8 C 1.53038 * 109.53486 * 181.31546 * 7 5 4 9 9 C 1.53629 * 109.24262 * 298.50854 * 8 7 5 10 10 N 1.46923 * 108.54400 * 54.85842 * 9 8 7 11 11 C 1.34769 * 120.63237 * 126.36621 * 10 9 8 12 12 O 1.21589 * 120.00521 * 175.65813 * 11 10 9 13 13 C 1.47539 * 119.99893 * 355.66641 * 11 10 9 14 14 C 1.39668 * 120.19773 * 54.96310 * 13 11 10 15 15 C 1.37827 * 119.91746 * 179.72181 * 14 13 11 16 16 C 1.38575 * 120.32575 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.40061 * 0.02562 * 16 15 14 18 18 C 1.38834 * 120.07121 * 359.96345 * 17 16 15 19 19 O 1.35518 * 120.15868 * 180.02562 * 18 17 16 20 20 C 1.34816 * 117.00501 * 5.56393 * 19 18 17 21 21 H 1.07997 * 119.99569 * 5.34626 * 20 19 18 22 22 C 1.38691 * 120.00304 * 185.33931 * 20 19 18 23 23 N 1.31516 * 120.00290 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99990 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47388 * 90.00050 * 24 22 20 26 26 H 1.48501 * 109.47365 * 210.00343 * 24 22 20 27 27 H 1.48500 * 109.46983 * 330.00125 * 24 22 20 28 28 C 1.46925 * 118.73802 * 306.09494 * 10 9 8 29 29 H 1.08994 * 109.47181 * 299.99913 * 1 2 3 30 30 H 1.09001 * 109.46790 * 60.00540 * 1 2 3 31 31 H 1.08998 * 109.46688 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47254 * 239.99445 * 2 1 3 33 33 H 1.09002 * 109.46907 * 299.99996 * 3 2 1 34 34 H 1.08994 * 109.46974 * 59.99960 * 3 2 1 35 35 H 1.09000 * 109.47359 * 180.02562 * 3 2 1 36 36 H 1.00903 * 110.99829 * 278.95114 * 4 2 1 37 37 H 1.08993 * 109.45658 * 301.33050 * 7 5 4 38 38 H 1.09001 * 109.46140 * 61.29506 * 7 5 4 39 39 H 1.08993 * 109.50291 * 58.58608 * 8 7 5 40 40 H 1.09006 * 109.49601 * 178.65218 * 8 7 5 41 41 H 1.09005 * 109.73874 * 295.11970 * 9 8 7 42 42 H 1.08996 * 109.66111 * 174.55273 * 9 8 7 43 43 H 1.08002 * 120.03865 * 359.75146 * 14 13 11 44 44 H 1.07996 * 119.83590 * 180.02562 * 15 14 13 45 45 H 1.07996 * 119.80068 * 179.97438 * 16 15 14 46 46 H 1.07998 * 119.96368 * 179.97438 * 17 16 15 47 47 H 0.96999 * 120.00312 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.58902 * 173.64719 * 28 10 9 49 49 H 1.09002 * 109.58671 * 293.92991 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3671 -1.2354 0.9807 6 1 3.9317 -0.5597 0.3384 7 6 4.0835 -1.3812 2.3252 8 6 5.4989 -1.9159 2.0955 9 6 5.4161 -3.3025 1.4394 10 7 4.6069 -3.1938 0.2178 11 6 5.0869 -3.6272 -0.9646 12 8 4.3792 -3.6047 -1.9531 13 6 6.4710 -4.1291 -1.0596 14 6 6.9035 -5.1601 -0.2225 15 6 8.1960 -5.6284 -0.3201 16 6 9.0706 -5.0810 -1.2452 17 6 8.6576 -4.0609 -2.0783 18 6 7.3592 -3.5767 -1.9943 19 8 6.9516 -2.5756 -2.8117 20 6 7.8174 -2.1709 -3.7626 21 1 8.7500 -2.6972 -3.9029 22 6 7.5104 -1.0790 -4.5607 23 7 6.3749 -0.4379 -4.3897 24 14 8.7098 -0.5188 -5.8787 25 1 8.4086 -1.2202 -7.1526 26 1 8.5779 0.9469 -6.0775 27 1 10.0965 -0.8379 -5.4539 28 6 3.2622 -2.6093 0.3109 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 2.0020 -0.0815 2.0023 37 1 4.1376 -0.4090 2.8150 38 1 3.5310 -2.0761 2.9577 39 1 6.0441 -1.2339 1.4430 40 1 6.0168 -1.9968 3.0513 41 1 4.9478 -4.0075 2.1264 42 1 6.4179 -3.6481 1.1845 43 1 6.2257 -5.5901 0.5001 44 1 8.5289 -6.4259 0.3276 45 1 10.0817 -5.4541 -1.3141 46 1 9.3452 -3.6392 -2.7964 47 1 6.1604 0.3260 -4.9476 48 1 2.8424 -2.4973 -0.6887 49 1 2.6212 -3.2601 0.9056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728604671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:45 Heat of formation + Delta-G solvation = -37.173807 kcal Electronic energy + Delta-G solvation = -29764.823275 eV Core-core repulsion = 25885.328047 eV Total energy + Delta-G solvation = -3879.495227 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.08791 -38.85911 -37.59682 -36.38775 -35.98288 -32.78515 -32.37689 -31.38064 -30.51950 -29.00149 -27.82431 -27.11406 -25.55274 -25.29708 -22.70915 -22.65326 -21.52912 -20.54626 -20.37464 -18.91612 -18.07968 -17.21747 -16.41570 -15.82771 -15.38632 -15.13933 -14.94056 -14.82164 -14.59518 -14.18093 -14.05866 -13.76084 -13.60066 -13.48705 -13.26272 -13.18955 -12.93263 -12.70489 -12.29163 -12.26218 -12.21797 -11.95094 -11.74842 -11.45856 -11.37189 -11.23836 -11.12121 -10.97981 -10.94073 -10.77331 -10.73561 -10.58594 -10.47835 -10.29294 -9.64186 -9.04423 -8.89341 -8.52123 -8.22513 -8.10915 -7.35147 -6.49851 -4.09154 1.81734 2.26951 3.09553 3.10728 3.15036 3.31413 3.58814 3.90835 4.17893 4.46165 4.75614 4.93499 4.97032 5.05414 5.06672 5.10309 5.13916 5.26732 5.29032 5.37856 5.46804 5.52475 5.61361 5.61540 5.66672 5.72890 5.81059 5.83196 5.89960 5.94273 5.95084 6.01746 6.05673 6.12766 6.14443 6.15789 6.27597 6.29555 6.41080 6.54512 6.63723 6.88620 6.93996 7.02986 7.15841 7.23416 7.26561 7.41462 7.65907 7.88164 7.97101 8.91292 8.93938 9.61439 10.66079 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009191 B = 0.004615 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.627752 B = 6066.325661 C = 8288.904145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.073 3.927 3 C -0.180 4.180 4 N -0.678 5.678 5 C 0.072 3.928 6 H 0.054 0.946 7 C -0.117 4.117 8 C -0.134 4.134 9 C 0.103 3.897 10 N -0.615 5.615 11 C 0.580 3.420 12 O -0.522 6.522 13 C -0.214 4.214 14 C -0.045 4.045 15 C -0.223 4.223 16 C -0.056 4.056 17 C -0.234 4.234 18 C 0.187 3.813 19 O -0.151 6.151 20 C -0.397 4.397 21 H 0.094 0.906 22 C 0.044 3.956 23 N -0.847 5.847 24 Si 0.942 3.058 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.266 1.266 28 C 0.130 3.870 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.339 0.661 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.116 0.884 44 H 0.111 0.889 45 H 0.111 0.889 46 H 0.132 0.868 47 H 0.271 0.729 48 H 0.088 0.912 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.418 -0.769 13.918 14.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.037 4.037 3 C -0.239 4.239 4 N -0.309 5.309 5 C -0.039 4.039 6 H 0.072 0.928 7 C -0.155 4.155 8 C -0.173 4.173 9 C -0.020 4.020 10 N -0.351 5.351 11 C 0.369 3.631 12 O -0.396 6.396 13 C -0.219 4.219 14 C -0.064 4.064 15 C -0.242 4.242 16 C -0.075 4.075 17 C -0.253 4.253 18 C 0.129 3.871 19 O -0.051 6.051 20 C -0.473 4.473 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.479 5.479 24 Si 0.766 3.234 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.191 1.191 28 C 0.006 3.994 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.158 0.842 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.116 0.884 43 H 0.134 0.866 44 H 0.129 0.871 45 H 0.129 0.871 46 H 0.149 0.851 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.488 -0.983 13.055 13.840 hybrid contribution 1.304 1.209 -0.576 1.870 sum -3.184 0.227 12.479 12.880 Atomic orbital electron populations 1.21735 0.94447 1.02164 1.01054 1.21649 0.95652 0.92567 0.93783 1.22477 1.01615 0.97784 1.02060 1.60526 1.24032 1.40524 1.05841 1.21873 0.88656 0.96639 0.96714 0.92835 1.21672 0.96042 1.01241 0.96514 1.21983 0.96678 0.97569 1.01033 1.21961 0.97354 0.96592 0.86070 1.47948 1.16505 1.62630 1.08012 1.18197 0.86590 0.76467 0.81830 1.90770 1.59050 1.54278 1.35550 1.18724 0.93790 1.05035 1.04302 1.20722 0.95565 0.94213 0.95874 1.20481 0.94523 1.05030 1.04154 1.20887 0.98351 0.94388 0.93846 1.21142 0.96532 1.02482 1.05138 1.19195 0.91089 0.88476 0.88298 1.84013 1.41150 1.42307 1.37652 1.21394 1.01486 1.14022 1.10379 0.88862 1.25341 0.97282 0.95246 0.98411 1.70063 1.21323 1.18807 1.37727 0.85709 0.79477 0.78249 0.79990 1.19685 1.20192 1.19067 1.21361 0.83355 0.92522 1.02114 0.93051 0.92589 0.92036 0.89895 0.91957 0.92799 0.92601 0.84229 0.92161 0.91095 0.91183 0.90767 0.91885 0.88424 0.86634 0.87119 0.87137 0.85059 0.91891 0.89382 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.52 37.16 0.35 -1.11 16 2 C 0.07 0.92 3.01 -67.71 -0.20 0.72 16 3 C -0.18 -2.13 9.15 37.16 0.34 -1.79 16 4 N -0.68 -8.12 6.06 -99.60 -0.60 -8.72 16 5 C 0.07 1.00 2.45 -67.59 -0.17 0.83 16 6 H 0.05 0.91 7.12 -51.93 -0.37 0.54 16 7 C -0.12 -1.32 5.17 -26.69 -0.14 -1.45 16 8 C -0.13 -1.63 6.10 -26.38 -0.16 -1.79 16 9 C 0.10 1.42 5.58 -3.48 -0.02 1.40 16 10 N -0.62 -10.95 2.97 -173.72 -0.52 -11.47 16 11 C 0.58 13.12 6.84 -12.47 -0.09 13.03 16 12 O -0.52 -14.16 16.22 3.07 0.05 -14.11 16 13 C -0.21 -4.66 4.87 -104.81 -0.51 -5.17 16 14 C -0.05 -0.78 7.45 -39.20 -0.29 -1.07 16 15 C -0.22 -3.60 10.02 -39.61 -0.40 -4.00 16 16 C -0.06 -0.98 10.03 -39.53 -0.40 -1.37 16 17 C -0.23 -4.97 9.13 -39.44 -0.36 -5.33 16 18 C 0.19 4.60 6.65 -38.60 -0.26 4.34 16 19 O -0.15 -4.41 8.98 -1.42 -0.01 -4.42 16 20 C -0.40 -11.17 9.44 30.90 0.29 -10.87 16 21 H 0.09 2.39 5.29 -52.49 -0.28 2.11 16 22 C 0.04 1.20 5.49 -17.52 -0.10 1.11 16 23 N -0.85 -25.17 13.67 55.48 0.76 -24.42 16 24 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 28 C 0.13 2.13 5.88 -3.71 -0.02 2.11 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.29 7.17 -51.93 -0.37 0.91 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.54 8.13 -51.93 -0.42 0.12 16 35 H 0.05 0.74 7.43 -51.93 -0.39 0.36 16 36 H 0.34 3.47 8.08 -39.29 -0.32 3.16 16 37 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.10 1.42 4.76 -51.93 -0.25 1.17 16 43 H 0.12 1.67 7.41 -52.49 -0.39 1.28 16 44 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 46 H 0.13 2.77 5.71 -52.49 -0.30 2.47 16 47 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 48 H 0.09 1.71 6.40 -51.93 -0.33 1.38 16 49 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 388.85 15.07 5.86 5.86 Total: -1.00 -33.28 388.85 -9.22 -42.50 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -7.62 Total: 9.73 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -2.12 Total: -10.43 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.36 Total: -44.60 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.04 Total: -18.54 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.28 -9.22 -42.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728604671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.331 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds