Wall clock time and date at job start Tue Mar 31 2020 16:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 N 1.46906 * 109.47087 * 119.99926 * 2 1 3 5 5 C 1.46902 * 110.99903 * 155.00258 * 4 2 1 6 6 H 1.08996 * 109.49977 * 35.06225 * 5 4 2 7 7 C 1.53042 * 109.49659 * 155.16210 * 5 4 2 8 8 C 1.53038 * 109.53486 * 181.31546 * 7 5 4 9 9 C 1.53629 * 109.24262 * 298.50854 * 8 7 5 10 10 N 1.46923 * 108.54400 * 54.85842 * 9 8 7 11 11 C 1.34769 * 120.63237 * 126.36621 * 10 9 8 12 12 O 1.21589 * 120.00521 * 175.65813 * 11 10 9 13 13 C 1.47539 * 119.99893 * 355.66641 * 11 10 9 14 14 C 1.39668 * 120.19773 * 54.96310 * 13 11 10 15 15 C 1.37827 * 119.91746 * 179.72181 * 14 13 11 16 16 C 1.38575 * 120.32575 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.40061 * 0.02562 * 16 15 14 18 18 C 1.38834 * 120.07121 * 359.96345 * 17 16 15 19 19 O 1.35518 * 120.15868 * 180.02562 * 18 17 16 20 20 C 1.34816 * 117.00501 * 5.56393 * 19 18 17 21 21 H 1.07997 * 119.99569 * 5.34626 * 20 19 18 22 22 C 1.38691 * 120.00304 * 185.33931 * 20 19 18 23 23 N 1.31516 * 120.00290 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99990 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47388 * 90.00050 * 24 22 20 26 26 H 1.48501 * 109.47365 * 210.00343 * 24 22 20 27 27 H 1.48500 * 109.46983 * 330.00125 * 24 22 20 28 28 C 1.46925 * 118.73802 * 306.09494 * 10 9 8 29 29 H 1.08994 * 109.47181 * 299.99913 * 1 2 3 30 30 H 1.09001 * 109.46790 * 60.00540 * 1 2 3 31 31 H 1.08998 * 109.46688 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47254 * 239.99445 * 2 1 3 33 33 H 1.09002 * 109.46907 * 299.99996 * 3 2 1 34 34 H 1.08994 * 109.46974 * 59.99960 * 3 2 1 35 35 H 1.09000 * 109.47359 * 180.02562 * 3 2 1 36 36 H 1.00903 * 110.99829 * 278.95114 * 4 2 1 37 37 H 1.08993 * 109.45658 * 301.33050 * 7 5 4 38 38 H 1.09001 * 109.46140 * 61.29506 * 7 5 4 39 39 H 1.08993 * 109.50291 * 58.58608 * 8 7 5 40 40 H 1.09006 * 109.49601 * 178.65218 * 8 7 5 41 41 H 1.09005 * 109.73874 * 295.11970 * 9 8 7 42 42 H 1.08996 * 109.66111 * 174.55273 * 9 8 7 43 43 H 1.08002 * 120.03865 * 359.75146 * 14 13 11 44 44 H 1.07996 * 119.83590 * 180.02562 * 15 14 13 45 45 H 1.07996 * 119.80068 * 179.97438 * 16 15 14 46 46 H 1.07998 * 119.96368 * 179.97438 * 17 16 15 47 47 H 0.96999 * 120.00312 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.58902 * 173.64719 * 28 10 9 49 49 H 1.09002 * 109.58671 * 293.92991 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3671 -1.2354 0.9807 6 1 3.9317 -0.5597 0.3384 7 6 4.0835 -1.3812 2.3252 8 6 5.4989 -1.9159 2.0955 9 6 5.4161 -3.3025 1.4394 10 7 4.6069 -3.1938 0.2178 11 6 5.0869 -3.6272 -0.9646 12 8 4.3792 -3.6047 -1.9531 13 6 6.4710 -4.1291 -1.0596 14 6 6.9035 -5.1601 -0.2225 15 6 8.1960 -5.6284 -0.3201 16 6 9.0706 -5.0810 -1.2452 17 6 8.6576 -4.0609 -2.0783 18 6 7.3592 -3.5767 -1.9943 19 8 6.9516 -2.5756 -2.8117 20 6 7.8174 -2.1709 -3.7626 21 1 8.7500 -2.6972 -3.9029 22 6 7.5104 -1.0790 -4.5607 23 7 6.3749 -0.4379 -4.3897 24 14 8.7098 -0.5188 -5.8787 25 1 8.4086 -1.2202 -7.1526 26 1 8.5779 0.9469 -6.0775 27 1 10.0965 -0.8379 -5.4539 28 6 3.2622 -2.6093 0.3109 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 2.0020 -0.0815 2.0023 37 1 4.1376 -0.4090 2.8150 38 1 3.5310 -2.0761 2.9577 39 1 6.0441 -1.2339 1.4430 40 1 6.0168 -1.9968 3.0513 41 1 4.9478 -4.0075 2.1264 42 1 6.4179 -3.6481 1.1845 43 1 6.2257 -5.5901 0.5001 44 1 8.5289 -6.4259 0.3276 45 1 10.0817 -5.4541 -1.3141 46 1 9.3452 -3.6392 -2.7964 47 1 6.1604 0.3260 -4.9476 48 1 2.8424 -2.4973 -0.6887 49 1 2.6212 -3.2601 0.9056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728604671.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:44 Heat of formation + Delta-G solvation = -60.779139 kcal Electronic energy + Delta-G solvation = -29765.846879 eV Core-core repulsion = 25885.328047 eV Total energy + Delta-G solvation = -3880.518831 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.65273 -40.40750 -39.07594 -38.09119 -37.28338 -34.38107 -34.10119 -32.59226 -31.98108 -30.64865 -29.01682 -28.09202 -27.45442 -26.73629 -24.20225 -23.84049 -23.16635 -21.81734 -21.52158 -20.36471 -19.93818 -18.83931 -18.08638 -17.26704 -16.74772 -16.59355 -16.38431 -16.20188 -15.97097 -15.68642 -15.50729 -15.41362 -15.20375 -14.75537 -14.60439 -14.37867 -14.24730 -14.19326 -13.81078 -13.59381 -13.44588 -13.26674 -13.10141 -12.93076 -12.70544 -12.60250 -12.48080 -12.37302 -12.25769 -12.15842 -11.96817 -11.85224 -11.73462 -11.50882 -11.44632 -10.87859 -10.76722 -9.83849 -9.70256 -9.43366 -9.07461 -8.51729 -6.21600 0.23809 0.68142 1.28941 1.40343 1.47876 1.68457 2.08686 2.12300 2.78098 3.08940 3.11843 3.38648 3.57380 3.83872 3.84634 3.95459 4.01602 4.05680 4.11084 4.16343 4.24895 4.26602 4.31334 4.50654 4.54764 4.57850 4.63759 4.68109 4.75371 4.79766 4.83129 4.90134 4.92557 4.93397 4.98782 5.03969 5.04812 5.08936 5.12484 5.15513 5.31611 5.38741 5.48974 5.54836 5.60156 5.68324 5.91782 5.96358 6.14586 6.40799 6.48742 6.90195 7.24105 7.72484 8.70573 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009191 B = 0.004615 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3045.627752 B = 6066.325661 C = 8288.904145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.072 3.928 3 C -0.174 4.174 4 N -0.665 5.665 5 C 0.081 3.919 6 H 0.008 0.992 7 C -0.107 4.107 8 C -0.131 4.131 9 C 0.095 3.905 10 N -0.607 5.607 11 C 0.566 3.434 12 O -0.590 6.590 13 C -0.228 4.228 14 C -0.037 4.037 15 C -0.188 4.188 16 C -0.046 4.046 17 C -0.249 4.249 18 C 0.144 3.856 19 O -0.217 6.217 20 C -0.418 4.418 21 H 0.107 0.893 22 C -0.024 4.024 23 N -0.916 5.916 24 Si 1.022 2.978 25 H -0.265 1.265 26 H -0.271 1.271 27 H -0.244 1.244 28 C 0.130 3.870 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.037 0.963 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.030 0.970 36 H 0.356 0.644 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.033 0.967 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.155 0.845 44 H 0.167 0.833 45 H 0.156 0.844 46 H 0.124 0.876 47 H 0.271 0.729 48 H 0.040 0.960 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 -2.964 18.314 18.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.038 4.038 3 C -0.233 4.233 4 N -0.298 5.298 5 C -0.030 4.030 6 H 0.026 0.974 7 C -0.145 4.145 8 C -0.169 4.169 9 C -0.026 4.026 10 N -0.340 5.340 11 C 0.356 3.644 12 O -0.470 6.470 13 C -0.233 4.233 14 C -0.055 4.055 15 C -0.206 4.206 16 C -0.064 4.064 17 C -0.268 4.268 18 C 0.091 3.909 19 O -0.121 6.121 20 C -0.494 4.494 21 H 0.124 0.876 22 C -0.222 4.222 23 N -0.553 5.553 24 Si 0.840 3.160 25 H -0.190 1.190 26 H -0.196 1.196 27 H -0.167 1.167 28 C 0.007 3.993 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.050 0.950 36 H 0.176 0.824 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.052 0.948 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.110 0.890 43 H 0.172 0.828 44 H 0.184 0.816 45 H 0.173 0.827 46 H 0.141 0.859 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.767 -3.219 17.568 18.073 hybrid contribution 0.799 1.580 -1.625 2.403 sum -1.968 -1.639 15.943 16.147 Atomic orbital electron populations 1.21665 0.92329 1.02223 1.02354 1.21602 0.97216 0.92564 0.92459 1.22420 0.99994 0.97464 1.03441 1.60479 1.22437 1.40799 1.06040 1.21692 0.89521 0.94107 0.97729 0.97432 1.21660 0.95129 1.03166 0.94547 1.21993 0.97320 0.95680 1.01937 1.22367 0.96815 0.98741 0.84715 1.48055 1.17172 1.60656 1.08123 1.18634 0.86934 0.76446 0.82363 1.90722 1.60748 1.57421 1.38129 1.19084 0.92999 1.06283 1.04900 1.21198 0.97102 0.92119 0.95129 1.21175 0.92996 1.03997 1.02469 1.21416 1.00665 0.92202 0.92136 1.21290 0.95136 1.04012 1.06352 1.19912 0.93368 0.88515 0.89101 1.83995 1.42890 1.45305 1.39932 1.21933 1.01882 1.14515 1.11089 0.87566 1.26729 0.99333 0.95093 1.01011 1.70254 1.24467 1.20356 1.40226 0.84561 0.77468 0.77722 0.76250 1.19021 1.19590 1.16745 1.21422 0.82999 0.94637 1.00289 0.90745 0.92242 0.92598 0.94457 0.92094 0.89827 0.95046 0.82350 0.90079 0.88369 0.94824 0.86648 0.87570 0.88965 0.82778 0.81553 0.82663 0.85873 0.92037 0.94090 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.52 71.98 0.69 -2.06 16 2 C 0.07 1.94 3.01 44.91 0.14 2.07 16 3 C -0.17 -4.35 9.15 71.98 0.66 -3.69 16 4 N -0.66 -15.90 6.06 -469.03 -2.84 -18.74 16 5 C 0.08 2.33 2.45 45.00 0.11 2.44 16 6 H 0.01 0.29 7.12 -2.39 -0.02 0.27 16 7 C -0.11 -2.15 5.17 30.62 0.16 -2.00 16 8 C -0.13 -2.91 6.10 30.82 0.19 -2.72 16 9 C 0.09 2.38 5.58 86.51 0.48 2.87 16 10 N -0.61 -22.32 2.97 -821.81 -2.44 -24.76 16 11 C 0.57 27.43 6.84 86.70 0.59 28.02 16 12 O -0.59 -35.57 16.22 -1.87 -0.03 -35.60 16 13 C -0.23 -10.21 4.87 -19.99 -0.10 -10.31 16 14 C -0.04 -1.17 7.45 22.52 0.17 -1.00 16 15 C -0.19 -5.01 10.02 22.25 0.22 -4.78 16 16 C -0.05 -1.42 10.03 22.30 0.22 -1.20 16 17 C -0.25 -10.64 9.13 22.36 0.20 -10.44 16 18 C 0.14 7.50 6.65 22.91 0.15 7.65 16 19 O -0.22 -13.93 8.98 -17.94 -0.16 -14.09 16 20 C -0.42 -25.49 9.44 67.93 0.64 -24.85 16 21 H 0.11 5.81 5.29 -2.91 -0.02 5.80 16 22 C -0.02 -1.41 5.49 84.85 0.47 -0.95 16 23 N -0.92 -60.02 13.67 21.62 0.30 -59.73 16 24 Si 1.02 44.57 29.55 68.60 2.03 46.60 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 27 H -0.24 -9.60 7.11 99.48 0.71 -8.89 16 28 C 0.13 4.50 5.88 86.37 0.51 5.01 16 29 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.04 1.34 7.17 -2.39 -0.02 1.33 16 33 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.58 8.13 -2.39 -0.02 1.56 16 35 H 0.03 0.92 7.43 -2.39 -0.02 0.90 16 36 H 0.36 6.57 8.08 -89.69 -0.72 5.85 16 37 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 41 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.09 2.43 4.76 -2.39 -0.01 2.42 16 43 H 0.15 3.67 7.41 -2.91 -0.02 3.65 16 44 H 0.17 2.82 8.06 -2.91 -0.02 2.80 16 45 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 46 H 0.12 5.35 5.71 -2.91 -0.02 5.33 16 47 H 0.27 16.27 8.31 -92.71 -0.77 15.50 16 48 H 0.04 1.81 6.40 -2.39 -0.02 1.79 16 49 H 0.09 2.71 8.14 -2.39 -0.02 2.70 16 Total: -1.00 -88.94 388.85 2.59 -86.36 By element: Atomic # 1 Polarization: 35.66 SS G_CDS: 0.23 Total: 35.89 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 5.50 Total: -15.94 kcal Atomic # 7 Polarization: -98.24 SS G_CDS: -4.98 Total: -103.23 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -0.19 Total: -49.68 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -88.94 2.59 -86.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728604671.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.580 kcal (2) G-P(sol) polarization free energy of solvation -88.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds