Wall clock time and date at job start Tue Mar 31 2020 16:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47311 * 2 1 4 4 N 1.46899 * 109.47437 * 120.00180 * 2 1 3 5 5 C 1.46901 * 111.00154 * 89.26332 * 4 2 1 6 6 H 1.09003 * 109.49577 * 329.20516 * 5 4 2 7 7 C 1.53108 * 109.51455 * 209.14631 * 5 4 2 8 8 C 1.53039 * 109.50658 * 178.68093 * 7 5 4 9 9 C 1.53199 * 109.33646 * 61.34597 * 8 7 5 10 10 N 1.46924 * 108.77456 * 305.35389 * 9 8 7 11 11 C 1.34784 * 120.62876 * 233.58631 * 10 9 8 12 12 O 1.21588 * 120.00012 * 175.61607 * 11 10 9 13 13 C 1.47538 * 119.99733 * 355.61453 * 11 10 9 14 14 C 1.39666 * 120.19517 * 322.42558 * 13 11 10 15 15 C 1.37826 * 119.91456 * 179.76774 * 14 13 11 16 16 C 1.38576 * 120.32713 * 0.51387 * 15 14 13 17 17 C 1.38021 * 120.39747 * 359.74098 * 16 15 14 18 18 C 1.38842 * 120.07621 * 359.97438 * 17 16 15 19 19 O 1.35511 * 120.16092 * 180.02562 * 18 17 16 20 20 C 1.34811 * 117.00524 * 5.90686 * 19 18 17 21 21 H 1.08004 * 119.99668 * 5.24663 * 20 19 18 22 22 C 1.38702 * 120.00439 * 185.24687 * 20 19 18 23 23 N 1.31521 * 120.00222 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99701 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47270 * 89.99984 * 24 22 20 26 26 H 1.48504 * 109.46919 * 210.00032 * 24 22 20 27 27 H 1.48499 * 109.47184 * 329.99489 * 24 22 20 28 28 C 1.46924 * 118.74234 * 53.60532 * 10 9 8 29 29 H 1.09003 * 109.46968 * 299.99924 * 1 2 3 30 30 H 1.08998 * 109.47238 * 59.99776 * 1 2 3 31 31 H 1.09010 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46968 * 240.00076 * 2 1 3 33 33 H 1.08995 * 109.47091 * 55.04173 * 3 2 1 34 34 H 1.09001 * 109.47218 * 175.04305 * 3 2 1 35 35 H 1.09007 * 109.46536 * 295.04278 * 3 2 1 36 36 H 1.00897 * 111.00409 * 213.21908 * 4 2 1 37 37 H 1.09010 * 109.50323 * 58.65484 * 7 5 4 38 38 H 1.08997 * 109.45142 * 298.67674 * 7 5 4 39 39 H 1.08997 * 109.49421 * 301.38481 * 8 7 5 40 40 H 1.08999 * 109.50126 * 181.31582 * 8 7 5 41 41 H 1.09001 * 109.58584 * 65.13936 * 9 8 7 42 42 H 1.09000 * 109.58312 * 185.42292 * 9 8 7 43 43 H 1.07995 * 120.04334 * 0.02562 * 14 13 11 44 44 H 1.08007 * 119.83950 * 180.27383 * 15 14 13 45 45 H 1.07998 * 119.80246 * 179.71710 * 16 15 14 46 46 H 1.08002 * 119.96500 * 179.97438 * 17 16 15 47 47 H 0.96994 * 119.99681 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.58530 * 66.18197 * 28 10 9 49 49 H 1.09003 * 109.58856 * 186.60434 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.1786 -2.1312 0.9486 6 1 1.4434 -2.4555 0.2120 7 6 1.9691 -2.9040 2.2537 8 6 2.1021 -4.4049 1.9858 9 6 3.5121 -4.7045 1.4668 10 7 3.7748 -3.8574 0.2955 11 6 4.1787 -4.4022 -0.8692 12 8 4.3161 -3.7010 -1.8531 13 6 4.4543 -5.8493 -0.9504 14 6 5.0591 -6.5104 0.1210 15 6 5.3095 -7.8633 0.0409 16 6 4.9737 -8.5706 -1.1025 17 6 4.3803 -7.9296 -2.1711 18 6 4.1152 -6.5683 -2.1060 19 8 3.5322 -5.9373 -3.1540 20 6 3.1225 -6.7079 -4.1815 21 1 3.1874 -7.7835 -4.1092 22 6 2.6176 -6.1194 -5.3316 23 7 2.2174 -6.8712 -6.3338 24 14 2.5060 -4.2589 -5.4569 25 1 3.7653 -3.7253 -6.0352 26 1 1.3641 -3.8894 -6.3314 27 1 2.2996 -3.6831 -4.1037 28 6 3.5893 -2.4051 0.4181 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0278 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.6060 1.9813 0.8422 34 1 3.1264 1.4438 0.0888 35 1 1.7509 1.9300 -0.9312 36 1 2.8832 -0.2848 1.5252 37 1 0.9745 -2.6920 2.6465 38 1 2.7199 -2.5972 2.9818 39 1 1.3678 -4.7077 1.2393 40 1 1.9299 -4.9562 2.9101 41 1 4.2422 -4.4869 2.2464 42 1 3.5817 -5.7548 1.1839 43 1 5.3265 -5.9629 1.0127 44 1 5.7733 -8.3742 0.8719 45 1 5.1779 -9.6296 -1.1579 46 1 4.1219 -8.4876 -3.0590 47 1 1.8640 -6.4596 -7.1378 48 1 4.3257 -1.9999 1.1120 49 1 3.7092 -1.9376 -0.5593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728604672.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:50 Heat of formation + Delta-G solvation = -30.651206 kcal Electronic energy + Delta-G solvation = -29751.964659 eV Core-core repulsion = 25872.752273 eV Total energy + Delta-G solvation = -3879.212386 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.35079 -39.05837 -37.73814 -36.62829 -36.12516 -32.97070 -32.49190 -31.69999 -30.64292 -29.28366 -27.94986 -27.31905 -25.68865 -25.24652 -22.89004 -22.76572 -21.42835 -20.78395 -20.51411 -19.18812 -18.03711 -17.29711 -16.69406 -16.13502 -15.59157 -15.53403 -14.95926 -14.74002 -14.62587 -14.40966 -14.14545 -13.83219 -13.77325 -13.70121 -13.51900 -13.13323 -12.91245 -12.62385 -12.55464 -12.41371 -12.27806 -12.21420 -11.92334 -11.55388 -11.47322 -11.43531 -11.22696 -11.06343 -10.99800 -10.88679 -10.80898 -10.58333 -10.51122 -10.16574 -9.67093 -9.21262 -8.93350 -8.82393 -8.35799 -8.19493 -7.52389 -6.50717 -4.16396 1.59813 2.13191 3.16454 3.25260 3.32355 3.41654 3.54876 3.96712 4.27386 4.37923 4.67712 4.71044 4.71987 4.85369 4.91685 4.97709 5.00972 5.03310 5.16814 5.21460 5.24525 5.37264 5.49262 5.52302 5.56184 5.63180 5.65728 5.69300 5.73359 5.77506 5.79644 5.82255 5.91611 5.96834 5.98270 6.03677 6.13978 6.19913 6.26050 6.33653 6.49690 6.67989 6.82153 6.94739 6.99331 7.12172 7.24489 7.44021 7.62025 7.76207 7.91419 8.71876 8.84640 9.46495 10.54996 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009605 B = 0.004771 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.578821 B = 5867.573618 C = 8109.263882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.072 3.928 3 C -0.154 4.154 4 N -0.676 5.676 5 C 0.072 3.928 6 H 0.082 0.918 7 C -0.102 4.102 8 C -0.137 4.137 9 C 0.096 3.904 10 N -0.614 5.614 11 C 0.572 3.428 12 O -0.525 6.525 13 C -0.221 4.221 14 C -0.047 4.047 15 C -0.218 4.218 16 C -0.053 4.053 17 C -0.224 4.224 18 C 0.200 3.800 19 O -0.181 6.181 20 C -0.395 4.395 21 H 0.109 0.891 22 C 0.072 3.928 23 N -0.869 5.869 24 Si 0.902 3.098 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.250 1.250 28 C 0.090 3.910 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.339 0.661 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.104 0.896 43 H 0.122 0.878 44 H 0.113 0.887 45 H 0.114 0.886 46 H 0.139 0.861 47 H 0.282 0.718 48 H 0.061 0.939 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.458 8.026 18.245 19.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.037 4.037 3 C -0.212 4.212 4 N -0.307 5.307 5 C -0.039 4.039 6 H 0.100 0.900 7 C -0.140 4.140 8 C -0.176 4.176 9 C -0.026 4.026 10 N -0.350 5.350 11 C 0.363 3.637 12 O -0.401 6.401 13 C -0.226 4.226 14 C -0.066 4.066 15 C -0.237 4.237 16 C -0.071 4.071 17 C -0.243 4.243 18 C 0.144 3.856 19 O -0.082 6.082 20 C -0.470 4.470 21 H 0.126 0.874 22 C -0.134 4.134 23 N -0.505 5.505 24 Si 0.727 3.273 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.173 1.173 28 C -0.034 4.034 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.158 0.842 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.140 0.860 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.156 0.844 47 H 0.092 0.908 48 H 0.079 0.921 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.268 8.608 17.645 19.634 hybrid contribution 0.754 0.483 -0.800 1.201 sum 0.486 9.091 16.845 19.148 Atomic orbital electron populations 1.21776 0.94455 1.01925 1.01380 1.21592 0.96231 0.94111 0.91812 1.22001 1.00785 0.95942 1.02454 1.60721 1.35405 1.02126 1.32445 1.22043 0.96136 0.87993 0.97726 0.90024 1.21472 1.02350 0.93740 0.96444 1.21968 0.97558 0.96441 1.01635 1.22165 0.96024 0.97020 0.87421 1.47861 1.68996 1.06357 1.11769 1.18275 0.76034 0.87689 0.81702 1.90776 1.51772 1.62667 1.34881 1.18741 1.15344 0.92817 0.95670 1.20913 0.95628 0.94407 0.95644 1.20566 1.09530 0.94220 0.99427 1.20969 0.94683 0.98911 0.92571 1.21281 1.07309 0.94469 1.01258 1.18965 0.89317 0.90532 0.86815 1.83691 1.63906 1.36196 1.24423 1.20870 1.41351 0.91997 0.92774 0.87375 1.24468 0.94892 1.00520 0.93475 1.69630 1.39284 1.36502 1.05119 0.86190 0.77956 0.83343 0.79815 1.19712 1.20983 1.17338 1.22214 0.96656 0.82064 1.02493 0.92201 0.92702 0.92774 0.93154 0.91906 0.92728 0.91921 0.84218 0.91212 0.91982 0.91281 0.90556 0.91870 0.87763 0.86042 0.86869 0.86776 0.84389 0.90812 0.92098 0.89417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.46 37.15 0.35 -1.10 16 2 C 0.07 0.78 3.03 -67.71 -0.21 0.58 16 3 C -0.15 -1.36 9.19 37.16 0.34 -1.02 16 4 N -0.68 -7.04 6.09 -99.58 -0.61 -7.65 16 5 C 0.07 0.86 2.42 -67.56 -0.16 0.70 16 6 H 0.08 1.20 7.44 -51.93 -0.39 0.81 16 7 C -0.10 -1.04 5.50 -26.66 -0.15 -1.18 16 8 C -0.14 -1.46 6.08 -26.61 -0.16 -1.62 16 9 C 0.10 1.16 4.83 -3.71 -0.02 1.14 16 10 N -0.61 -9.67 2.97 -174.00 -0.52 -10.19 16 11 C 0.57 11.87 7.21 -12.47 -0.09 11.78 16 12 O -0.53 -13.17 15.45 -11.62 -0.18 -13.35 16 13 C -0.22 -4.50 5.27 -104.81 -0.55 -5.05 16 14 C -0.05 -0.76 7.34 -39.20 -0.29 -1.04 16 15 C -0.22 -3.31 10.02 -39.61 -0.40 -3.70 16 16 C -0.05 -0.89 10.03 -39.54 -0.40 -1.28 16 17 C -0.22 -4.68 9.12 -39.44 -0.36 -5.04 16 18 C 0.20 4.71 6.62 -38.60 -0.26 4.46 16 19 O -0.18 -4.98 7.29 -16.07 -0.12 -5.09 16 20 C -0.39 -11.26 9.90 30.90 0.31 -10.95 16 21 H 0.11 3.07 5.53 -52.48 -0.29 2.78 16 22 C 0.07 2.06 5.49 -17.51 -0.10 1.96 16 23 N -0.87 -25.17 13.96 55.48 0.77 -24.40 16 24 Si 0.90 23.26 28.62 -169.99 -4.86 18.39 16 25 H -0.27 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.25 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.09 1.25 5.73 -3.72 -0.02 1.23 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.63 7.83 -51.92 -0.41 0.22 16 32 H 0.05 0.67 7.49 -51.93 -0.39 0.28 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.05 0.46 8.03 -51.93 -0.42 0.04 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 36 H 0.34 3.11 7.83 -39.29 -0.31 2.80 16 37 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 42 H 0.10 1.34 4.47 -51.93 -0.23 1.10 16 43 H 0.12 1.56 6.21 -52.49 -0.33 1.23 16 44 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.14 3.00 5.71 -52.49 -0.30 2.70 16 47 H 0.28 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.06 0.71 8.03 -51.93 -0.42 0.29 16 49 H 0.09 1.45 6.74 -51.93 -0.35 1.10 16 LS Contribution 385.90 15.07 5.82 5.82 Total: -1.00 -32.26 385.90 -9.45 -41.71 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.60 Total: 4.91 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -2.15 Total: -10.15 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.35 Total: -42.23 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.30 Total: -18.44 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.86 Total: 18.39 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.26 -9.45 -41.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728604672.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.062 kcal (2) G-P(sol) polarization free energy of solvation -32.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds