Wall clock time and date at job start Tue Mar 31 2020 16:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47311 * 2 1 4 4 N 1.46899 * 109.47437 * 120.00180 * 2 1 3 5 5 C 1.46901 * 111.00154 * 89.26332 * 4 2 1 6 6 H 1.09003 * 109.49577 * 329.20516 * 5 4 2 7 7 C 1.53108 * 109.51455 * 209.14631 * 5 4 2 8 8 C 1.53039 * 109.50658 * 178.68093 * 7 5 4 9 9 C 1.53199 * 109.33646 * 61.34597 * 8 7 5 10 10 N 1.46924 * 108.77456 * 305.35389 * 9 8 7 11 11 C 1.34784 * 120.62876 * 233.58631 * 10 9 8 12 12 O 1.21588 * 120.00012 * 175.61607 * 11 10 9 13 13 C 1.47538 * 119.99733 * 355.61453 * 11 10 9 14 14 C 1.39666 * 120.19517 * 322.42558 * 13 11 10 15 15 C 1.37826 * 119.91456 * 179.76774 * 14 13 11 16 16 C 1.38576 * 120.32713 * 0.51387 * 15 14 13 17 17 C 1.38021 * 120.39747 * 359.74098 * 16 15 14 18 18 C 1.38842 * 120.07621 * 359.97438 * 17 16 15 19 19 O 1.35511 * 120.16092 * 180.02562 * 18 17 16 20 20 C 1.34811 * 117.00524 * 5.90686 * 19 18 17 21 21 H 1.08004 * 119.99668 * 5.24663 * 20 19 18 22 22 C 1.38702 * 120.00439 * 185.24687 * 20 19 18 23 23 N 1.31521 * 120.00222 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99701 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47270 * 89.99984 * 24 22 20 26 26 H 1.48504 * 109.46919 * 210.00032 * 24 22 20 27 27 H 1.48499 * 109.47184 * 329.99489 * 24 22 20 28 28 C 1.46924 * 118.74234 * 53.60532 * 10 9 8 29 29 H 1.09003 * 109.46968 * 299.99924 * 1 2 3 30 30 H 1.08998 * 109.47238 * 59.99776 * 1 2 3 31 31 H 1.09010 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46968 * 240.00076 * 2 1 3 33 33 H 1.08995 * 109.47091 * 55.04173 * 3 2 1 34 34 H 1.09001 * 109.47218 * 175.04305 * 3 2 1 35 35 H 1.09007 * 109.46536 * 295.04278 * 3 2 1 36 36 H 1.00897 * 111.00409 * 213.21908 * 4 2 1 37 37 H 1.09010 * 109.50323 * 58.65484 * 7 5 4 38 38 H 1.08997 * 109.45142 * 298.67674 * 7 5 4 39 39 H 1.08997 * 109.49421 * 301.38481 * 8 7 5 40 40 H 1.08999 * 109.50126 * 181.31582 * 8 7 5 41 41 H 1.09001 * 109.58584 * 65.13936 * 9 8 7 42 42 H 1.09000 * 109.58312 * 185.42292 * 9 8 7 43 43 H 1.07995 * 120.04334 * 0.02562 * 14 13 11 44 44 H 1.08007 * 119.83950 * 180.27383 * 15 14 13 45 45 H 1.07998 * 119.80246 * 179.71710 * 16 15 14 46 46 H 1.08002 * 119.96500 * 179.97438 * 17 16 15 47 47 H 0.96994 * 119.99681 * 179.97438 * 23 22 20 48 48 H 1.08999 * 109.58530 * 66.18197 * 28 10 9 49 49 H 1.09003 * 109.58856 * 186.60434 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.1786 -2.1312 0.9486 6 1 1.4434 -2.4555 0.2120 7 6 1.9691 -2.9040 2.2537 8 6 2.1021 -4.4049 1.9858 9 6 3.5121 -4.7045 1.4668 10 7 3.7748 -3.8574 0.2955 11 6 4.1787 -4.4022 -0.8692 12 8 4.3161 -3.7010 -1.8531 13 6 4.4543 -5.8493 -0.9504 14 6 5.0591 -6.5104 0.1210 15 6 5.3095 -7.8633 0.0409 16 6 4.9737 -8.5706 -1.1025 17 6 4.3803 -7.9296 -2.1711 18 6 4.1152 -6.5683 -2.1060 19 8 3.5322 -5.9373 -3.1540 20 6 3.1225 -6.7079 -4.1815 21 1 3.1874 -7.7835 -4.1092 22 6 2.6176 -6.1194 -5.3316 23 7 2.2174 -6.8712 -6.3338 24 14 2.5060 -4.2589 -5.4569 25 1 3.7653 -3.7253 -6.0352 26 1 1.3641 -3.8894 -6.3314 27 1 2.2996 -3.6831 -4.1037 28 6 3.5893 -2.4051 0.4181 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0278 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.6060 1.9813 0.8422 34 1 3.1264 1.4438 0.0888 35 1 1.7509 1.9300 -0.9312 36 1 2.8832 -0.2848 1.5252 37 1 0.9745 -2.6920 2.6465 38 1 2.7199 -2.5972 2.9818 39 1 1.3678 -4.7077 1.2393 40 1 1.9299 -4.9562 2.9101 41 1 4.2422 -4.4869 2.2464 42 1 3.5817 -5.7548 1.1839 43 1 5.3265 -5.9629 1.0127 44 1 5.7733 -8.3742 0.8719 45 1 5.1779 -9.6296 -1.1579 46 1 4.1219 -8.4876 -3.0590 47 1 1.8640 -6.4596 -7.1378 48 1 4.3257 -1.9999 1.1120 49 1 3.7092 -1.9376 -0.5593 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728604672.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:49 Heat of formation + Delta-G solvation = -51.949037 kcal Electronic energy + Delta-G solvation = -29752.888203 eV Core-core repulsion = 25872.752273 eV Total energy + Delta-G solvation = -3880.135929 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -41.78376 -40.52910 -39.06708 -38.24973 -37.26139 -34.57596 -34.13370 -32.73696 -32.01007 -30.87265 -28.96443 -28.14579 -27.39332 -26.73731 -24.19826 -23.89705 -22.99641 -21.82065 -21.57827 -20.50227 -19.95457 -18.87260 -18.20814 -17.36671 -16.91569 -16.67263 -16.48226 -16.27603 -15.73981 -15.62895 -15.54524 -15.48654 -15.22302 -15.08301 -14.63291 -14.39465 -14.27455 -14.12654 -13.94502 -13.89922 -13.45568 -13.23739 -13.04126 -12.90621 -12.82940 -12.60404 -12.48987 -12.40043 -12.28797 -12.15074 -11.96684 -11.84624 -11.67534 -11.57960 -11.48090 -11.02507 -10.81514 -9.98337 -9.79170 -9.33081 -9.16603 -8.63328 -6.31815 0.09124 0.60617 1.14659 1.21057 1.43669 1.75064 2.01577 2.18780 2.67891 2.98168 3.04439 3.05707 3.55531 3.73111 3.88434 3.95171 4.01353 4.06324 4.08979 4.11598 4.21642 4.24415 4.33784 4.47223 4.51089 4.54232 4.64925 4.68525 4.74092 4.74336 4.82492 4.86325 4.89671 4.92579 4.96860 5.04093 5.10519 5.20036 5.27290 5.27596 5.31129 5.39396 5.45085 5.51752 5.60678 5.65819 5.80515 5.97419 6.13015 6.35123 6.43369 6.73501 7.20203 7.52922 8.47842 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009605 B = 0.004771 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.578821 B = 5867.573618 C = 8109.263882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.069 3.931 3 C -0.147 4.147 4 N -0.663 5.663 5 C 0.080 3.920 6 H 0.043 0.957 7 C -0.093 4.093 8 C -0.134 4.134 9 C 0.088 3.912 10 N -0.604 5.604 11 C 0.559 3.441 12 O -0.586 6.586 13 C -0.227 4.227 14 C -0.036 4.036 15 C -0.183 4.183 16 C -0.044 4.044 17 C -0.246 4.246 18 C 0.158 3.842 19 O -0.227 6.227 20 C -0.399 4.399 21 H 0.094 0.906 22 C 0.028 3.972 23 N -0.908 5.908 24 Si 0.953 3.047 25 H -0.275 1.275 26 H -0.259 1.259 27 H -0.282 1.282 28 C 0.090 3.910 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.035 0.965 32 H 0.015 0.985 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.350 0.650 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.038 0.962 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.099 0.901 43 H 0.167 0.833 44 H 0.171 0.829 45 H 0.153 0.847 46 H 0.115 0.885 47 H 0.286 0.714 48 H 0.096 0.904 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 7.968 23.920 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.041 4.041 3 C -0.205 4.205 4 N -0.295 5.295 5 C -0.032 4.032 6 H 0.061 0.939 7 C -0.131 4.131 8 C -0.172 4.172 9 C -0.033 4.033 10 N -0.338 5.338 11 C 0.350 3.650 12 O -0.466 6.466 13 C -0.232 4.232 14 C -0.054 4.054 15 C -0.201 4.201 16 C -0.062 4.062 17 C -0.265 4.265 18 C 0.106 3.894 19 O -0.132 6.132 20 C -0.475 4.475 21 H 0.112 0.888 22 C -0.172 4.172 23 N -0.548 5.548 24 Si 0.778 3.222 25 H -0.201 1.201 26 H -0.183 1.183 27 H -0.208 1.208 28 C -0.035 4.035 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.033 0.967 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.170 0.830 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.057 0.943 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.117 0.883 43 H 0.185 0.815 44 H 0.188 0.812 45 H 0.171 0.829 46 H 0.133 0.867 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.342 8.536 23.415 24.959 hybrid contribution 0.432 0.391 -2.101 2.180 sum 1.774 8.928 21.314 23.176 Atomic orbital electron populations 1.21747 0.94187 1.01009 1.02259 1.21602 0.96534 0.95284 0.90670 1.21947 1.01141 0.94242 1.03171 1.60781 1.35858 1.01147 1.31682 1.21932 0.93786 0.89326 0.98121 0.93892 1.21437 1.03516 0.92924 0.95228 1.21973 0.95791 0.97178 1.02276 1.22544 0.98131 0.96021 0.86613 1.47964 1.66758 1.07626 1.11409 1.18580 0.76126 0.87882 0.82404 1.90745 1.54692 1.63907 1.37302 1.19148 1.15185 0.92938 0.95916 1.21449 0.93367 0.95196 0.95355 1.21266 1.05597 0.93624 0.99575 1.21452 0.92426 1.00876 0.91471 1.21326 1.09079 0.93651 1.02444 1.19687 0.90588 0.92173 0.86979 1.83670 1.67427 1.36564 1.25579 1.20845 1.41516 0.91665 0.93523 0.88831 1.24965 0.95567 1.03011 0.93657 1.69666 1.42003 1.37299 1.05874 0.85472 0.78410 0.80216 0.78093 1.20078 1.18305 1.20754 1.22367 0.98782 0.80869 1.01435 0.90807 0.92287 0.94575 0.96728 0.90406 0.92184 0.91835 0.82955 0.90745 0.89326 0.94281 0.86952 0.87448 0.88306 0.81547 0.81173 0.82940 0.86705 0.90373 0.88612 0.93258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.46 71.98 0.68 -2.19 16 2 C 0.07 1.53 3.03 44.91 0.14 1.67 16 3 C -0.15 -2.47 9.19 71.98 0.66 -1.81 16 4 N -0.66 -13.03 6.09 -468.97 -2.86 -15.89 16 5 C 0.08 1.87 2.42 45.01 0.11 1.98 16 6 H 0.04 1.35 7.44 -2.39 -0.02 1.33 16 7 C -0.09 -1.59 5.50 30.64 0.17 -1.42 16 8 C -0.13 -2.39 6.08 30.67 0.19 -2.20 16 9 C 0.09 1.74 4.83 86.37 0.42 2.16 16 10 N -0.60 -18.40 2.97 -822.66 -2.45 -20.85 16 11 C 0.56 23.81 7.21 86.69 0.62 24.44 16 12 O -0.59 -31.53 15.45 12.17 0.19 -31.35 16 13 C -0.23 -9.19 5.27 -19.99 -0.11 -9.30 16 14 C -0.04 -0.98 7.34 22.52 0.17 -0.81 16 15 C -0.18 -4.39 10.02 22.25 0.22 -4.17 16 16 C -0.04 -1.33 10.03 22.30 0.22 -1.10 16 17 C -0.25 -10.49 9.12 22.36 0.20 -10.28 16 18 C 0.16 7.76 6.62 22.91 0.15 7.92 16 19 O -0.23 -13.53 7.29 -3.75 -0.03 -13.55 16 20 C -0.40 -24.69 9.90 67.93 0.67 -24.01 16 21 H 0.09 5.82 5.53 -2.91 -0.02 5.80 16 22 C 0.03 1.74 5.49 84.85 0.47 2.21 16 23 N -0.91 -55.85 13.96 21.62 0.30 -55.54 16 24 Si 0.95 51.90 28.62 68.60 1.96 53.86 16 25 H -0.28 -14.85 7.11 99.48 0.71 -14.14 16 26 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.28 -16.66 7.11 99.48 0.71 -15.96 16 28 C 0.09 2.43 5.73 86.36 0.49 2.93 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.04 0.88 7.83 -2.38 -0.02 0.86 16 32 H 0.01 0.43 7.49 -2.39 -0.02 0.41 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 0.94 8.03 -2.39 -0.02 0.92 16 35 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.35 5.59 7.83 -89.70 -0.70 4.88 16 37 H 0.07 1.26 8.14 -2.38 -0.02 1.25 16 38 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.11 1.32 8.09 -2.39 -0.02 1.30 16 42 H 0.10 2.09 4.47 -2.39 -0.01 2.08 16 43 H 0.17 3.11 6.21 -2.91 -0.02 3.09 16 44 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 46 H 0.12 5.37 5.71 -2.91 -0.02 5.35 16 47 H 0.29 16.20 8.31 -92.71 -0.77 15.43 16 48 H 0.10 1.95 8.03 -2.39 -0.02 1.93 16 49 H 0.05 1.74 6.74 -2.39 -0.02 1.72 16 Total: -1.00 -82.21 385.90 2.86 -79.35 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.26 Total: 17.97 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 5.48 Total: -14.00 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -5.00 Total: -92.28 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: 0.16 Total: -44.90 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 1.96 Total: 53.86 kcal Total: -82.21 2.86 -79.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728604672.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.402 kcal (2) G-P(sol) polarization free energy of solvation -82.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds