Wall clock time and date at job start Tue Mar 31 2020 16:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47092 * 2 1 4 4 N 1.46896 * 109.47119 * 120.00508 * 2 1 3 5 5 C 1.47904 * 111.00273 * 64.83512 * 4 2 1 6 6 C 1.53991 * 107.05478 * 145.84637 * 5 4 2 7 7 C 1.54592 * 105.23123 * 358.72785 * 6 5 4 8 8 H 1.08995 * 110.72613 * 96.44827 * 7 6 5 9 9 C 1.52999 * 110.72393 * 219.73643 * 7 6 5 10 10 N 1.46505 * 109.47034 * 293.54331 * 9 7 6 11 11 C 1.34774 * 119.99824 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00424 * 359.97438 * 11 10 9 13 13 C 1.47536 * 119.99737 * 180.02562 * 11 10 9 14 14 C 1.39671 * 120.19764 * 359.97438 * 13 11 10 15 15 C 1.37820 * 119.91834 * 180.02562 * 14 13 11 16 16 C 1.38579 * 120.32515 * 359.97438 * 15 14 13 17 17 C 1.38017 * 120.40245 * 0.02626 * 16 15 14 18 18 C 1.38837 * 120.07135 * 359.66971 * 17 16 15 19 19 O 1.35523 * 120.16776 * 180.30191 * 18 17 16 20 20 C 1.34820 * 116.99428 * 5.62785 * 19 18 17 21 21 H 1.07999 * 120.00180 * 354.92709 * 20 19 18 22 22 C 1.38695 * 120.00067 * 174.93443 * 20 19 18 23 23 N 1.31526 * 119.99853 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00384 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46966 * 59.99706 * 24 22 20 26 26 H 1.48497 * 109.47633 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47094 * 300.00073 * 24 22 20 28 28 C 1.48535 * 111.00225 * 182.23591 * 4 2 1 29 29 H 1.08997 * 109.47162 * 304.90980 * 1 2 3 30 30 H 1.09002 * 109.46770 * 64.91076 * 1 2 3 31 31 H 1.09007 * 109.47230 * 184.90294 * 1 2 3 32 32 H 1.09007 * 109.46883 * 240.00156 * 2 1 3 33 33 H 1.08998 * 109.46675 * 59.99965 * 3 2 1 34 34 H 1.08999 * 109.46805 * 180.02562 * 3 2 1 35 35 H 1.08993 * 109.46917 * 300.00181 * 3 2 1 36 36 H 1.08998 * 109.91466 * 26.49649 * 5 4 2 37 37 H 1.09002 * 109.91431 * 265.19876 * 5 4 2 38 38 H 1.09003 * 110.30999 * 117.69466 * 6 5 4 39 39 H 1.09005 * 110.30739 * 239.75188 * 6 5 4 40 40 H 1.09000 * 109.47144 * 53.54464 * 9 7 6 41 41 H 1.08999 * 109.47450 * 173.54591 * 9 7 6 42 42 H 0.96998 * 120.00026 * 0.02562 * 10 9 7 43 43 H 1.07999 * 120.03904 * 0.02562 * 14 13 11 44 44 H 1.08004 * 119.84195 * 180.02562 * 15 14 13 45 45 H 1.08000 * 119.79791 * 180.02562 * 16 15 14 46 46 H 1.07997 * 119.96451 * 179.97438 * 17 16 15 47 47 H 0.96996 * 119.99901 * 179.97438 * 23 22 20 48 48 H 1.08999 * 110.66234 * 318.71089 * 28 4 2 49 49 H 1.08996 * 110.66815 * 81.67295 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.6428 -2.1226 1.1767 6 6 2.7872 -2.9020 1.8507 7 6 3.8413 -1.8344 2.2233 8 1 3.7259 -1.5242 3.2617 9 6 5.2560 -2.3578 1.9669 10 7 5.5433 -3.4600 2.8884 11 6 6.7393 -4.0797 2.8456 12 8 7.5798 -3.7244 2.0420 13 6 7.0284 -5.1900 3.7731 14 6 6.0658 -5.6019 4.6975 15 6 6.3421 -6.6394 5.5616 16 6 7.5714 -7.2777 5.5181 17 6 8.5324 -6.8815 4.6101 18 6 8.2693 -5.8424 3.7276 19 8 9.2093 -5.4559 2.8311 20 6 10.3349 -6.1952 2.7674 21 1 10.4917 -7.0016 3.4685 22 6 11.2915 -5.9202 1.8016 23 7 11.1003 -4.9384 0.9475 24 14 12.8514 -6.9440 1.7137 25 1 12.4972 -8.3660 1.4731 26 1 13.7051 -6.4513 0.6030 27 1 13.5922 -6.8284 2.9955 28 6 3.5035 -0.6658 1.2611 29 1 -0.3633 0.5881 0.8427 30 1 -0.3633 0.4358 -0.9307 31 1 -0.3634 -1.0240 0.0878 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.5212 -2.4582 0.1468 37 1 0.7158 -2.2711 1.7305 38 1 2.4254 -3.4054 2.7473 39 1 3.2118 -3.6268 1.1560 40 1 5.3310 -2.7141 0.9396 41 1 5.9751 -1.5543 2.1262 42 1 4.8727 -3.7437 3.5292 43 1 5.1061 -5.1080 4.7350 44 1 5.5967 -6.9572 6.2756 45 1 7.7788 -8.0900 6.1989 46 1 9.4881 -7.3836 4.5826 47 1 11.7695 -4.7458 0.2723 48 1 3.9327 -0.8444 0.2752 49 1 3.8546 0.2834 1.6658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742841810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:39 Heat of formation + Delta-G solvation = -34.870380 kcal Electronic energy + Delta-G solvation = -28245.798058 eV Core-core repulsion = 24366.402714 eV Total energy + Delta-G solvation = -3879.395343 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.87502 -39.36709 -37.99001 -36.32697 -35.53190 -33.45132 -32.32996 -30.95295 -29.69680 -29.39382 -28.90479 -27.27859 -25.50827 -24.95956 -22.74819 -22.36916 -21.36533 -20.55915 -19.94969 -19.73701 -18.03192 -17.54910 -16.66053 -16.21718 -15.90332 -15.25123 -14.90965 -14.63452 -14.48510 -14.29460 -14.14390 -14.05810 -13.73716 -13.59635 -13.42172 -12.97905 -12.79733 -12.62395 -12.52420 -12.45753 -12.39904 -12.01047 -11.70702 -11.55188 -11.33268 -11.28735 -11.20513 -11.10793 -11.04075 -10.92017 -10.85709 -10.78697 -10.67337 -10.47185 -9.56590 -8.87068 -8.83290 -8.65067 -8.52093 -8.25466 -7.29932 -6.43550 -4.03632 1.73115 2.32928 3.12003 3.14069 3.16515 3.57085 3.77127 3.78986 3.94198 4.42153 4.50717 4.63679 4.66346 4.78483 4.82518 5.05219 5.06493 5.07924 5.18483 5.24423 5.33039 5.37829 5.42805 5.48995 5.52824 5.54854 5.56643 5.61720 5.64043 5.70099 5.74136 5.79837 5.86925 5.91712 5.98446 6.03600 6.12365 6.13078 6.23500 6.57264 6.66380 6.70208 6.84308 6.92071 6.98975 7.07002 7.24879 7.29948 7.70428 7.93059 8.15478 8.95940 9.12835 9.68592 10.70243 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.002500 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.597129 B =11198.672752 C =12711.505050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.066 3.934 3 C -0.147 4.147 4 N -0.513 5.513 5 C 0.038 3.962 6 C -0.129 4.129 7 C -0.101 4.101 8 H 0.089 0.911 9 C 0.134 3.866 10 N -0.742 5.742 11 C 0.553 3.447 12 O -0.502 6.502 13 C -0.227 4.227 14 C -0.038 4.038 15 C -0.231 4.231 16 C -0.051 4.051 17 C -0.238 4.238 18 C 0.189 3.811 19 O -0.124 6.124 20 C -0.404 4.404 21 H 0.093 0.907 22 C 0.045 3.955 23 N -0.833 5.833 24 Si 0.941 3.059 25 H -0.269 1.269 26 H -0.277 1.277 27 H -0.269 1.269 28 C 0.044 3.956 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.044 0.956 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.392 0.608 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.272 0.728 48 H 0.049 0.951 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.617 6.054 1.872 19.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.042 4.042 3 C -0.204 4.204 4 N -0.238 5.238 5 C -0.090 4.090 6 C -0.167 4.167 7 C -0.121 4.121 8 H 0.107 0.893 9 C 0.010 3.990 10 N -0.398 5.398 11 C 0.343 3.657 12 O -0.376 6.376 13 C -0.231 4.231 14 C -0.057 4.057 15 C -0.250 4.250 16 C -0.070 4.070 17 C -0.257 4.257 18 C 0.129 3.871 19 O -0.022 6.022 20 C -0.480 4.480 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.465 5.465 24 Si 0.765 3.235 25 H -0.194 1.194 26 H -0.202 1.202 27 H -0.194 1.194 28 C -0.084 4.084 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.226 0.774 43 H 0.129 0.871 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.082 0.918 48 H 0.068 0.932 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.046 6.931 1.268 19.373 hybrid contribution 0.714 -1.171 -0.358 1.417 sum -17.332 5.760 0.910 18.287 Atomic orbital electron populations 1.21824 0.94239 1.02085 1.01889 1.21825 0.95904 0.95427 0.91088 1.21875 1.01283 0.95124 1.02152 1.64822 1.09611 1.11837 1.37525 1.22844 0.98929 0.87712 0.99539 1.22516 0.95228 0.97793 1.01187 1.22331 0.93915 0.95104 1.00720 0.89265 1.21145 0.94216 0.89688 0.93968 1.45846 1.17153 1.36931 1.39907 1.18233 0.81281 0.82348 0.83868 1.90947 1.45234 1.64085 1.37332 1.18861 0.95013 1.04175 1.05098 1.20753 0.96375 0.95303 0.93277 1.20460 0.98349 1.01792 1.04422 1.20893 0.92996 0.97128 0.95957 1.21155 1.01653 1.02385 1.00549 1.19291 0.88149 0.90692 0.88966 1.84179 1.23527 1.47029 1.47424 1.21450 0.94489 1.14698 1.17357 0.88935 1.25382 0.99181 0.96977 0.94776 1.70122 1.34465 1.26405 1.15472 0.85800 0.79858 0.79370 0.78503 1.19373 1.20169 1.19367 1.23194 0.87910 0.98832 0.98484 0.91866 0.92422 0.92660 0.94063 0.91751 0.92422 0.92303 0.93809 0.90444 0.90845 0.90866 0.91918 0.91663 0.77394 0.87091 0.87294 0.87204 0.85100 0.91827 0.93236 0.89625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.25 37.16 0.34 -0.69 16 2 C 0.07 0.56 2.38 -67.71 -0.16 0.40 16 3 C -0.15 -1.13 8.99 37.16 0.33 -0.80 16 4 N -0.51 -4.88 5.11 -222.39 -1.14 -6.02 16 5 C 0.04 0.34 5.48 -2.75 -0.02 0.32 16 6 C -0.13 -1.24 6.19 -25.38 -0.16 -1.39 16 7 C -0.10 -1.06 3.13 -88.67 -0.28 -1.33 16 8 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 9 C 0.13 1.90 5.01 -4.04 -0.02 1.88 16 10 N -0.74 -11.84 5.35 -61.35 -0.33 -12.16 16 11 C 0.55 12.19 7.76 -12.47 -0.10 12.09 16 12 O -0.50 -13.83 15.17 -16.56 -0.25 -14.08 16 13 C -0.23 -4.94 5.89 -104.81 -0.62 -5.55 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 15 C -0.23 -3.79 10.02 -39.61 -0.40 -4.18 16 16 C -0.05 -0.90 10.03 -39.54 -0.40 -1.30 16 17 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 18 C 0.19 4.71 6.66 -38.60 -0.26 4.46 16 19 O -0.12 -3.67 7.84 -21.08 -0.17 -3.83 16 20 C -0.40 -11.49 9.49 30.90 0.29 -11.20 16 21 H 0.09 2.38 5.21 -52.49 -0.27 2.11 16 22 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 23 N -0.83 -25.26 13.67 55.48 0.76 -24.50 16 24 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 27 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 28 C 0.04 0.44 4.77 -1.81 -0.01 0.43 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.40 7.16 -51.92 -0.37 0.03 16 32 H 0.04 0.38 7.96 -51.92 -0.41 -0.04 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.46 6.88 -51.93 -0.36 0.10 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.04 0.40 7.66 -51.93 -0.40 0.00 16 37 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.78 7.80 -51.93 -0.41 0.38 16 40 H 0.06 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.39 5.01 6.36 -40.82 -0.26 4.75 16 43 H 0.11 1.45 6.40 -52.49 -0.34 1.12 16 44 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 46 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 47 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 48 H 0.05 0.52 7.93 -51.93 -0.41 0.11 16 49 H 0.09 0.82 7.65 -51.93 -0.40 0.42 16 LS Contribution 391.50 15.07 5.90 5.90 Total: -1.00 -34.32 391.50 -10.21 -44.53 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -7.70 Total: 6.84 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.26 Total: -12.25 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.71 Total: -42.68 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.42 Total: -17.91 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.32 -10.21 -44.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742841810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.660 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds