Wall clock time and date at job start Tue Mar 31 2020 16:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47092 * 2 1 4 4 N 1.46896 * 109.47119 * 120.00508 * 2 1 3 5 5 C 1.47904 * 111.00273 * 64.83512 * 4 2 1 6 6 C 1.53991 * 107.05478 * 145.84637 * 5 4 2 7 7 C 1.54592 * 105.23123 * 358.72785 * 6 5 4 8 8 H 1.08995 * 110.72613 * 96.44827 * 7 6 5 9 9 C 1.52999 * 110.72393 * 219.73643 * 7 6 5 10 10 N 1.46505 * 109.47034 * 293.54331 * 9 7 6 11 11 C 1.34774 * 119.99824 * 180.02562 * 10 9 7 12 12 O 1.21585 * 120.00424 * 359.97438 * 11 10 9 13 13 C 1.47536 * 119.99737 * 180.02562 * 11 10 9 14 14 C 1.39671 * 120.19764 * 359.97438 * 13 11 10 15 15 C 1.37820 * 119.91834 * 180.02562 * 14 13 11 16 16 C 1.38579 * 120.32515 * 359.97438 * 15 14 13 17 17 C 1.38017 * 120.40245 * 0.02626 * 16 15 14 18 18 C 1.38837 * 120.07135 * 359.66971 * 17 16 15 19 19 O 1.35523 * 120.16776 * 180.30191 * 18 17 16 20 20 C 1.34820 * 116.99428 * 5.62785 * 19 18 17 21 21 H 1.07999 * 120.00180 * 354.92709 * 20 19 18 22 22 C 1.38695 * 120.00067 * 174.93443 * 20 19 18 23 23 N 1.31526 * 119.99853 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00384 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46966 * 59.99706 * 24 22 20 26 26 H 1.48497 * 109.47633 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47094 * 300.00073 * 24 22 20 28 28 C 1.48535 * 111.00225 * 182.23591 * 4 2 1 29 29 H 1.08997 * 109.47162 * 304.90980 * 1 2 3 30 30 H 1.09002 * 109.46770 * 64.91076 * 1 2 3 31 31 H 1.09007 * 109.47230 * 184.90294 * 1 2 3 32 32 H 1.09007 * 109.46883 * 240.00156 * 2 1 3 33 33 H 1.08998 * 109.46675 * 59.99965 * 3 2 1 34 34 H 1.08999 * 109.46805 * 180.02562 * 3 2 1 35 35 H 1.08993 * 109.46917 * 300.00181 * 3 2 1 36 36 H 1.08998 * 109.91466 * 26.49649 * 5 4 2 37 37 H 1.09002 * 109.91431 * 265.19876 * 5 4 2 38 38 H 1.09003 * 110.30999 * 117.69466 * 6 5 4 39 39 H 1.09005 * 110.30739 * 239.75188 * 6 5 4 40 40 H 1.09000 * 109.47144 * 53.54464 * 9 7 6 41 41 H 1.08999 * 109.47450 * 173.54591 * 9 7 6 42 42 H 0.96998 * 120.00026 * 0.02562 * 10 9 7 43 43 H 1.07999 * 120.03904 * 0.02562 * 14 13 11 44 44 H 1.08004 * 119.84195 * 180.02562 * 15 14 13 45 45 H 1.08000 * 119.79791 * 180.02562 * 16 15 14 46 46 H 1.07997 * 119.96451 * 179.97438 * 17 16 15 47 47 H 0.96996 * 119.99901 * 179.97438 * 23 22 20 48 48 H 1.08999 * 110.66234 * 318.71089 * 28 4 2 49 49 H 1.08996 * 110.66815 * 81.67295 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 1.6428 -2.1226 1.1767 6 6 2.7872 -2.9020 1.8507 7 6 3.8413 -1.8344 2.2233 8 1 3.7259 -1.5242 3.2617 9 6 5.2560 -2.3578 1.9669 10 7 5.5433 -3.4600 2.8884 11 6 6.7393 -4.0797 2.8456 12 8 7.5798 -3.7244 2.0420 13 6 7.0284 -5.1900 3.7731 14 6 6.0658 -5.6019 4.6975 15 6 6.3421 -6.6394 5.5616 16 6 7.5714 -7.2777 5.5181 17 6 8.5324 -6.8815 4.6101 18 6 8.2693 -5.8424 3.7276 19 8 9.2093 -5.4559 2.8311 20 6 10.3349 -6.1952 2.7674 21 1 10.4917 -7.0016 3.4685 22 6 11.2915 -5.9202 1.8016 23 7 11.1003 -4.9384 0.9475 24 14 12.8514 -6.9440 1.7137 25 1 12.4972 -8.3660 1.4731 26 1 13.7051 -6.4513 0.6030 27 1 13.5922 -6.8284 2.9955 28 6 3.5035 -0.6658 1.2611 29 1 -0.3633 0.5881 0.8427 30 1 -0.3633 0.4358 -0.9307 31 1 -0.3634 -1.0240 0.0878 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.5212 -2.4582 0.1468 37 1 0.7158 -2.2711 1.7305 38 1 2.4254 -3.4054 2.7473 39 1 3.2118 -3.6268 1.1560 40 1 5.3310 -2.7141 0.9396 41 1 5.9751 -1.5543 2.1262 42 1 4.8727 -3.7437 3.5292 43 1 5.1061 -5.1080 4.7350 44 1 5.5967 -6.9572 6.2756 45 1 7.7788 -8.0900 6.1989 46 1 9.4881 -7.3836 4.5826 47 1 11.7695 -4.7458 0.2723 48 1 3.9327 -0.8444 0.2752 49 1 3.8546 0.2834 1.6658 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742841810.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:38 Heat of formation + Delta-G solvation = -58.779616 kcal Electronic energy + Delta-G solvation = -28246.834840 eV Core-core repulsion = 24366.402714 eV Total energy + Delta-G solvation = -3880.432125 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.32684 -40.50119 -39.63174 -38.01832 -36.64424 -34.68676 -34.31186 -32.36865 -30.77245 -30.55060 -30.18411 -27.98577 -27.39562 -26.20726 -24.26534 -23.15160 -22.99931 -21.58795 -21.18060 -20.76827 -19.83894 -19.19658 -17.85944 -17.46562 -17.16518 -16.55605 -16.30455 -16.08509 -15.95220 -15.65286 -15.49983 -15.32679 -15.21137 -14.96695 -14.32266 -14.28139 -14.15819 -14.01759 -13.70597 -13.54847 -13.28829 -13.01879 -12.98000 -12.93407 -12.68727 -12.50095 -12.37076 -12.24417 -12.16080 -12.10341 -12.00572 -11.77547 -11.70610 -11.50136 -11.42443 -10.82476 -10.61538 -10.10869 -9.77103 -9.40959 -9.02914 -8.44581 -6.15636 0.13374 0.73725 1.31780 1.44882 1.49758 2.10768 2.15870 2.24691 2.88027 2.94692 3.23264 3.47521 3.61083 3.62996 3.81323 4.00951 4.07552 4.09668 4.11934 4.27844 4.30006 4.35265 4.41502 4.43333 4.52819 4.61168 4.64589 4.69320 4.77310 4.80981 4.91160 4.93168 4.96667 4.98181 5.01841 5.03948 5.07907 5.13927 5.15192 5.24344 5.34034 5.38476 5.49097 5.54496 5.61991 5.70592 5.90602 5.96192 6.12109 6.18087 6.71086 6.94649 7.49545 7.80817 8.75875 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015435 B = 0.002500 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.597129 B =11198.672752 C =12711.505050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.061 3.939 3 C -0.144 4.144 4 N -0.514 5.514 5 C 0.039 3.961 6 C -0.127 4.127 7 C -0.088 4.088 8 H 0.105 0.895 9 C 0.136 3.864 10 N -0.713 5.713 11 C 0.546 3.454 12 O -0.571 6.571 13 C -0.245 4.245 14 C -0.029 4.029 15 C -0.200 4.200 16 C -0.040 4.040 17 C -0.258 4.258 18 C 0.147 3.853 19 O -0.189 6.189 20 C -0.428 4.428 21 H 0.107 0.893 22 C -0.023 4.023 23 N -0.906 5.906 24 Si 1.022 2.978 25 H -0.254 1.254 26 H -0.274 1.274 27 H -0.253 1.253 28 C 0.045 3.955 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.064 0.936 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.041 0.959 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.058 0.942 40 H 0.042 0.958 41 H 0.049 0.951 42 H 0.412 0.588 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.154 0.846 46 H 0.123 0.877 47 H 0.271 0.729 48 H 0.037 0.963 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.119 4.546 5.142 23.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.047 4.047 3 C -0.202 4.202 4 N -0.239 5.239 5 C -0.089 4.089 6 C -0.165 4.165 7 C -0.107 4.107 8 H 0.123 0.877 9 C 0.012 3.988 10 N -0.369 5.369 11 C 0.336 3.664 12 O -0.450 6.450 13 C -0.249 4.249 14 C -0.047 4.047 15 C -0.219 4.219 16 C -0.058 4.058 17 C -0.278 4.278 18 C 0.092 3.908 19 O -0.091 6.091 20 C -0.504 4.504 21 H 0.124 0.876 22 C -0.222 4.222 23 N -0.542 5.542 24 Si 0.840 3.160 25 H -0.178 1.178 26 H -0.198 1.198 27 H -0.178 1.178 28 C -0.084 4.084 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.059 0.941 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.250 0.750 43 H 0.178 0.822 44 H 0.182 0.818 45 H 0.171 0.829 46 H 0.141 0.859 47 H 0.079 0.921 48 H 0.056 0.944 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -21.664 5.403 4.623 22.801 hybrid contribution 1.368 -0.730 -1.100 1.901 sum -20.296 4.673 3.523 21.123 Atomic orbital electron populations 1.21786 0.92991 1.02256 1.02494 1.21918 0.96892 0.95575 0.90315 1.21856 1.00784 0.94807 1.02730 1.64876 1.08754 1.12226 1.38066 1.22874 0.99161 0.87264 0.99593 1.22519 0.94905 0.97263 1.01801 1.22213 0.91286 0.95566 1.01638 0.87729 1.21197 0.96557 0.88502 0.92574 1.45561 1.15512 1.36063 1.39730 1.18563 0.82058 0.82565 0.83171 1.90929 1.47817 1.66145 1.40130 1.19304 0.95275 1.04082 1.06278 1.21306 0.96913 0.95261 0.91249 1.21185 0.98332 0.99181 1.03159 1.21438 0.92314 0.97481 0.94612 1.21301 1.02846 1.02119 1.01494 1.20119 0.88956 0.92485 0.89234 1.84184 1.25032 1.49326 1.50598 1.22003 0.95049 1.15286 1.18051 0.87592 1.26769 1.03119 0.98287 0.94031 1.70322 1.36396 1.29900 1.17601 0.84626 0.74666 0.77695 0.78995 1.17800 1.19828 1.17757 1.23162 0.88633 0.98800 0.97790 0.91841 0.91358 0.92573 0.94963 0.91706 0.93206 0.91183 0.94096 0.89038 0.88739 0.92321 0.93923 0.93219 0.74997 0.82153 0.81759 0.82862 0.85949 0.92050 0.94441 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.25 71.98 0.67 -1.07 16 2 C 0.06 0.97 2.38 44.92 0.11 1.08 16 3 C -0.14 -2.08 8.99 71.98 0.65 -1.44 16 4 N -0.51 -8.97 5.11 -857.51 -4.38 -13.35 16 5 C 0.04 0.62 5.48 86.44 0.47 1.09 16 6 C -0.13 -2.14 6.19 31.47 0.19 -1.95 16 7 C -0.09 -1.71 3.13 -9.53 -0.03 -1.74 16 8 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 9 C 0.14 3.94 5.01 86.38 0.43 4.38 16 10 N -0.71 -22.35 5.35 -466.27 -2.49 -24.85 16 11 C 0.55 24.96 7.76 86.70 0.67 25.63 16 12 O -0.57 -34.14 15.17 16.91 0.26 -33.88 16 13 C -0.24 -10.64 5.89 -19.98 -0.12 -10.76 16 14 C -0.03 -0.86 9.53 22.52 0.21 -0.65 16 15 C -0.20 -5.26 10.02 22.25 0.22 -5.04 16 16 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 17 C -0.26 -11.08 9.16 22.36 0.20 -10.88 16 18 C 0.15 7.64 6.66 22.91 0.15 7.80 16 19 O -0.19 -12.14 7.84 0.75 0.01 -12.13 16 20 C -0.43 -26.13 9.49 67.93 0.64 -25.48 16 21 H 0.11 5.78 5.21 -2.91 -0.02 5.77 16 22 C -0.02 -1.38 5.49 84.85 0.47 -0.91 16 23 N -0.91 -59.87 13.67 21.62 0.30 -59.57 16 24 Si 1.02 44.55 29.55 68.60 2.03 46.58 16 25 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 28 C 0.04 0.86 4.77 86.71 0.41 1.28 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.70 7.16 -2.38 -0.02 0.68 16 32 H 0.03 0.57 7.96 -2.38 -0.02 0.55 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.79 6.88 -2.39 -0.02 0.77 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.04 0.68 7.66 -2.39 -0.02 0.66 16 37 H 0.09 1.24 8.10 -2.39 -0.02 1.22 16 38 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.18 7.80 -2.38 -0.02 1.16 16 40 H 0.04 1.42 8.08 -2.39 -0.02 1.40 16 41 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.41 9.23 6.36 -92.71 -0.59 8.64 16 43 H 0.16 3.13 6.40 -2.91 -0.02 3.11 16 44 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 45 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 47 H 0.27 16.38 8.31 -92.71 -0.77 15.61 16 48 H 0.04 0.81 7.93 -2.39 -0.02 0.79 16 49 H 0.09 1.67 7.65 -2.39 -0.02 1.65 16 Total: -1.00 -87.17 391.50 1.66 -85.51 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.36 Total: 31.37 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 5.59 Total: -19.68 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -6.58 Total: -97.77 kcal Atomic # 8 Polarization: -46.28 SS G_CDS: 0.26 Total: -46.01 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -87.17 1.66 -85.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742841810.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.728 kcal (2) G-P(sol) polarization free energy of solvation -87.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds