Wall clock time and date at job start Tue Mar 31 2020 16:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 N 1.46906 * 109.46897 * 120.00152 * 2 1 3 5 5 C 1.47846 * 110.99991 * 54.15334 * 4 2 1 6 6 C 1.54905 * 104.79121 * 146.36553 * 5 4 2 7 7 C 1.55148 * 101.65522 * 322.93193 * 6 5 4 8 8 H 1.09001 * 110.85298 * 277.20523 * 7 6 5 9 9 C 1.52992 * 110.70602 * 154.03782 * 7 6 5 10 10 N 1.46501 * 109.47340 * 71.40151 * 9 7 6 11 11 C 1.34775 * 120.00200 * 179.97438 * 10 9 7 12 12 O 1.21601 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.47538 * 120.00277 * 179.97438 * 11 10 9 14 14 C 1.39667 * 120.19282 * 359.97438 * 13 11 10 15 15 C 1.37827 * 119.91473 * 180.02562 * 14 13 11 16 16 C 1.38577 * 120.32805 * 359.97438 * 15 14 13 17 17 C 1.38030 * 120.39742 * 359.74034 * 16 15 14 18 18 C 1.38832 * 120.07183 * 0.52004 * 17 16 15 19 19 O 1.35518 * 120.16282 * 179.76564 * 18 17 16 20 20 C 1.34819 * 116.99873 * 5.60193 * 19 18 17 21 21 H 1.08001 * 119.99462 * 354.94186 * 20 19 18 22 22 C 1.38700 * 120.00259 * 174.94889 * 20 19 18 23 23 N 1.31518 * 120.00151 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99709 * 359.72142 * 22 20 19 25 25 H 1.48498 * 109.47086 * 270.27665 * 24 22 20 26 26 H 1.48506 * 109.47310 * 30.27564 * 24 22 20 27 27 H 1.48500 * 109.46881 * 150.27621 * 24 22 20 28 28 C 1.47440 * 111.00033 * 175.00121 * 4 2 1 29 29 H 1.09006 * 109.46762 * 60.00278 * 1 2 3 30 30 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47475 * 300.00144 * 1 2 3 32 32 H 1.09000 * 109.47228 * 239.99499 * 2 1 3 33 33 H 1.08999 * 109.47215 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47027 * 299.99971 * 3 2 1 35 35 H 1.09000 * 109.47468 * 60.00221 * 3 2 1 36 36 H 1.08998 * 110.37429 * 265.19115 * 5 4 2 37 37 H 1.08994 * 110.37046 * 27.42607 * 5 4 2 38 38 H 1.08996 * 110.99153 * 204.84160 * 6 5 4 39 39 H 1.08999 * 110.99378 * 81.02134 * 6 5 4 40 40 H 1.09000 * 109.47116 * 311.40156 * 9 7 6 41 41 H 1.09005 * 109.47188 * 191.39801 * 9 7 6 42 42 H 0.96998 * 119.99711 * 359.97438 * 10 9 7 43 43 H 1.07996 * 120.04385 * 0.03943 * 14 13 11 44 44 H 1.08003 * 119.83889 * 179.97438 * 15 14 13 45 45 H 1.07995 * 119.79894 * 180.02562 * 16 15 14 46 46 H 1.08001 * 119.96041 * 180.27424 * 17 16 15 47 47 H 0.96997 * 119.99903 * 179.72108 * 23 22 20 48 48 H 1.08997 * 109.89197 * 117.33039 * 28 4 2 49 49 H 1.09005 * 110.02306 * 356.22523 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 1.4342 -2.0460 1.3060 6 6 2.5463 -2.9082 1.9535 7 6 3.8223 -2.3187 1.2967 8 1 3.9902 -2.7570 0.3130 9 6 5.0413 -2.5309 2.1966 10 7 5.4063 -3.9497 2.1980 11 6 6.4581 -4.3742 2.9260 12 8 7.1043 -3.5796 3.5814 13 6 6.8254 -5.8032 2.9278 14 6 6.0856 -6.7195 2.1769 15 6 6.4335 -8.0531 2.1832 16 6 7.5150 -8.4907 2.9309 17 6 8.2588 -7.5956 3.6732 18 6 7.9198 -6.2494 3.6832 19 8 8.6460 -5.3698 4.4150 20 6 9.7542 -5.8440 5.0188 21 1 9.9834 -6.8985 4.9753 22 6 10.5997 -4.9777 5.6958 23 7 11.6805 -5.4405 6.2852 24 14 10.2071 -3.1528 5.7645 25 1 10.8313 -2.4682 4.6039 26 1 8.7351 -2.9611 5.7192 27 1 10.7426 -2.5784 7.0248 28 6 3.4886 -0.8170 1.1751 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.5494 -2.0277 1.9422 37 1 1.1819 -2.4291 0.3172 38 1 2.4248 -3.9601 1.6956 39 1 2.5656 -2.7726 3.0349 40 1 4.8021 -2.2163 3.2125 41 1 5.8774 -1.9410 1.8209 42 1 4.8910 -4.5835 1.6749 43 1 5.2423 -6.3835 1.5920 44 1 5.8604 -8.7607 1.6024 45 1 7.7803 -9.5375 2.9293 46 1 9.1030 -7.9436 4.2499 47 1 12.2740 -4.8340 6.7553 48 1 3.9209 -0.2719 2.0142 49 1 3.8809 -0.4247 0.2368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742841812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:42 Heat of formation + Delta-G solvation = -34.759279 kcal Electronic energy + Delta-G solvation = -28366.325577 eV Core-core repulsion = 24486.935052 eV Total energy + Delta-G solvation = -3879.390525 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.05239 -39.56379 -38.20369 -36.52876 -35.63034 -33.59498 -32.44921 -31.08209 -29.86259 -29.51205 -29.20209 -27.34107 -25.52091 -24.94601 -22.92325 -22.44190 -21.30712 -20.68936 -20.29139 -19.85711 -17.92649 -17.82683 -16.65893 -16.47399 -16.19257 -15.31747 -15.07209 -14.70851 -14.51283 -14.35348 -14.13557 -13.96193 -13.84491 -13.68444 -13.55325 -13.44449 -12.78408 -12.71472 -12.56647 -12.44214 -12.35363 -12.19702 -12.13085 -11.63030 -11.41535 -11.39361 -11.28017 -11.27122 -11.15799 -11.01607 -10.89985 -10.81598 -10.71416 -10.04278 -9.61997 -9.06378 -8.88833 -8.72964 -8.59524 -8.38145 -7.48245 -6.46925 -4.12000 1.57288 2.18119 3.32335 3.38762 3.47889 3.58143 3.62824 3.67389 4.31074 4.34645 4.36289 4.52061 4.58414 4.66681 4.71498 4.74021 4.97631 5.01667 5.09260 5.11405 5.16285 5.23355 5.31413 5.33759 5.39489 5.45162 5.48304 5.54140 5.58653 5.62498 5.65267 5.74016 5.81057 5.84081 5.86859 5.95730 5.98077 6.03303 6.10988 6.37014 6.54581 6.67005 6.77197 6.81956 6.83624 7.00392 7.14190 7.47583 7.67594 7.94420 7.95893 8.86187 8.90222 9.51837 10.58135 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.002751 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.316006 B =10176.652319 C =11880.767495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 C -0.145 4.145 4 N -0.524 5.524 5 C 0.043 3.957 6 C -0.125 4.125 7 C -0.121 4.121 8 H 0.080 0.920 9 C 0.135 3.865 10 N -0.740 5.740 11 C 0.560 3.440 12 O -0.518 6.518 13 C -0.226 4.226 14 C -0.041 4.041 15 C -0.222 4.222 16 C -0.051 4.051 17 C -0.227 4.227 18 C 0.201 3.799 19 O -0.165 6.165 20 C -0.397 4.397 21 H 0.108 0.892 22 C 0.072 3.928 23 N -0.870 5.870 24 Si 0.901 3.099 25 H -0.274 1.274 26 H -0.238 1.238 27 H -0.286 1.286 28 C 0.050 3.950 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.046 0.954 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.393 0.607 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.138 0.862 47 H 0.282 0.718 48 H 0.083 0.917 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.927 5.780 -13.769 25.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.038 4.038 3 C -0.203 4.203 4 N -0.249 5.249 5 C -0.084 4.084 6 C -0.163 4.163 7 C -0.141 4.141 8 H 0.099 0.901 9 C 0.011 3.989 10 N -0.396 5.396 11 C 0.350 3.650 12 O -0.394 6.394 13 C -0.231 4.231 14 C -0.060 4.060 15 C -0.241 4.241 16 C -0.070 4.070 17 C -0.246 4.246 18 C 0.143 3.857 19 O -0.065 6.065 20 C -0.471 4.471 21 H 0.125 0.875 22 C -0.134 4.134 23 N -0.505 5.505 24 Si 0.725 3.275 25 H -0.200 1.200 26 H -0.161 1.161 27 H -0.213 1.213 28 C -0.078 4.078 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.227 0.773 43 H 0.130 0.870 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.156 0.844 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.402 7.021 -12.641 25.007 hybrid contribution 0.084 -0.300 -0.942 0.992 sum -20.318 6.721 -13.583 25.347 Atomic orbital electron populations 1.21897 0.94328 1.02011 1.02235 1.21811 0.95676 0.95418 0.90901 1.21866 1.01193 0.95141 1.02093 1.63696 1.05642 1.17651 1.37933 1.23028 0.98114 0.87739 0.99527 1.22821 0.93242 0.99051 1.01200 1.22636 0.95214 0.96729 0.99490 0.90130 1.21167 0.95434 0.82724 0.99559 1.45850 1.33304 1.08869 1.51530 1.18197 0.79591 0.88296 0.78935 1.90862 1.51317 1.55788 1.41416 1.18864 1.02450 0.92827 1.08945 1.20743 0.96641 0.92990 0.95593 1.20535 1.01638 0.95349 1.06555 1.20964 0.93574 0.98553 0.93876 1.21290 1.04405 0.92702 1.06192 1.19028 0.89759 0.88839 0.88092 1.83782 1.34069 1.35145 1.53511 1.20928 0.97910 0.96648 1.31660 0.87455 1.24497 0.93771 1.00689 0.94442 1.69638 1.11632 1.37049 1.32202 0.86193 0.81995 0.82190 0.77096 1.19954 1.16099 1.21251 1.22796 0.88097 0.94890 1.02046 0.92303 0.92612 0.91722 0.94255 0.92538 0.92376 0.91720 0.90214 0.93610 0.90695 0.90064 0.91357 0.91705 0.77261 0.86962 0.87045 0.86841 0.84420 0.90828 0.89861 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.97 37.16 0.33 -0.62 16 2 C 0.07 0.53 2.24 -67.71 -0.15 0.38 16 3 C -0.15 -1.03 9.15 37.16 0.34 -0.69 16 4 N -0.52 -4.63 5.03 -223.30 -1.12 -5.75 16 5 C 0.04 0.34 5.33 -2.30 -0.01 0.33 16 6 C -0.13 -1.06 6.44 -24.59 -0.16 -1.22 16 7 C -0.12 -1.11 2.96 -88.80 -0.26 -1.38 16 8 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 9 C 0.14 1.73 4.97 -4.05 -0.02 1.71 16 10 N -0.74 -10.67 5.42 -61.35 -0.33 -11.01 16 11 C 0.56 11.29 7.76 -12.47 -0.10 11.19 16 12 O -0.52 -12.93 15.17 -16.58 -0.25 -13.19 16 13 C -0.23 -4.57 5.89 -104.81 -0.62 -5.19 16 14 C -0.04 -0.64 9.54 -39.20 -0.37 -1.02 16 15 C -0.22 -3.41 10.02 -39.61 -0.40 -3.80 16 16 C -0.05 -0.87 10.03 -39.53 -0.40 -1.27 16 17 C -0.23 -4.79 9.16 -39.44 -0.36 -5.15 16 18 C 0.20 4.75 6.66 -38.60 -0.26 4.49 16 19 O -0.17 -4.56 6.67 -21.06 -0.14 -4.70 16 20 C -0.40 -11.39 9.95 30.90 0.31 -11.08 16 21 H 0.11 3.06 5.44 -52.49 -0.29 2.78 16 22 C 0.07 2.07 5.49 -17.52 -0.10 1.97 16 23 N -0.87 -25.36 13.96 55.48 0.77 -24.59 16 24 Si 0.90 23.36 28.62 -169.99 -4.86 18.49 16 25 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.24 -6.52 7.11 56.52 0.40 -6.12 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.05 0.45 5.76 -2.84 -0.02 0.44 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.35 6.74 -51.93 -0.35 0.00 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.31 8.10 -51.93 -0.42 -0.11 16 33 H 0.06 0.42 6.81 -51.93 -0.35 0.06 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.34 7.32 -51.93 -0.38 -0.04 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.79 7.94 -51.93 -0.41 0.38 16 40 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.39 4.45 6.50 -40.82 -0.27 4.18 16 43 H 0.11 1.32 6.40 -52.49 -0.34 0.98 16 44 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 46 H 0.14 3.02 5.64 -52.49 -0.30 2.72 16 47 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 48 H 0.08 0.82 7.82 -51.93 -0.41 0.42 16 49 H 0.06 0.50 6.67 -51.93 -0.35 0.15 16 LS Contribution 389.45 15.07 5.87 5.87 Total: -1.00 -32.85 389.45 -9.94 -42.79 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.63 Total: 2.98 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.24 Total: -10.90 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: -0.68 Total: -41.35 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.39 Total: -17.89 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.86 Total: 18.49 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.85 -9.94 -42.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742841812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.029 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds