Wall clock time and date at job start Tue Mar 31 2020 16:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47080 * 2 1 4 4 N 1.46906 * 109.46897 * 120.00152 * 2 1 3 5 5 C 1.47846 * 110.99991 * 54.15334 * 4 2 1 6 6 C 1.54905 * 104.79121 * 146.36553 * 5 4 2 7 7 C 1.55148 * 101.65522 * 322.93193 * 6 5 4 8 8 H 1.09001 * 110.85298 * 277.20523 * 7 6 5 9 9 C 1.52992 * 110.70602 * 154.03782 * 7 6 5 10 10 N 1.46501 * 109.47340 * 71.40151 * 9 7 6 11 11 C 1.34775 * 120.00200 * 179.97438 * 10 9 7 12 12 O 1.21601 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.47538 * 120.00277 * 179.97438 * 11 10 9 14 14 C 1.39667 * 120.19282 * 359.97438 * 13 11 10 15 15 C 1.37827 * 119.91473 * 180.02562 * 14 13 11 16 16 C 1.38577 * 120.32805 * 359.97438 * 15 14 13 17 17 C 1.38030 * 120.39742 * 359.74034 * 16 15 14 18 18 C 1.38832 * 120.07183 * 0.52004 * 17 16 15 19 19 O 1.35518 * 120.16282 * 179.76564 * 18 17 16 20 20 C 1.34819 * 116.99873 * 5.60193 * 19 18 17 21 21 H 1.08001 * 119.99462 * 354.94186 * 20 19 18 22 22 C 1.38700 * 120.00259 * 174.94889 * 20 19 18 23 23 N 1.31518 * 120.00151 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 119.99709 * 359.72142 * 22 20 19 25 25 H 1.48498 * 109.47086 * 270.27665 * 24 22 20 26 26 H 1.48506 * 109.47310 * 30.27564 * 24 22 20 27 27 H 1.48500 * 109.46881 * 150.27621 * 24 22 20 28 28 C 1.47440 * 111.00033 * 175.00121 * 4 2 1 29 29 H 1.09006 * 109.46762 * 60.00278 * 1 2 3 30 30 H 1.09003 * 109.47022 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47475 * 300.00144 * 1 2 3 32 32 H 1.09000 * 109.47228 * 239.99499 * 2 1 3 33 33 H 1.08999 * 109.47215 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47027 * 299.99971 * 3 2 1 35 35 H 1.09000 * 109.47468 * 60.00221 * 3 2 1 36 36 H 1.08998 * 110.37429 * 265.19115 * 5 4 2 37 37 H 1.08994 * 110.37046 * 27.42607 * 5 4 2 38 38 H 1.08996 * 110.99153 * 204.84160 * 6 5 4 39 39 H 1.08999 * 110.99378 * 81.02134 * 6 5 4 40 40 H 1.09000 * 109.47116 * 311.40156 * 9 7 6 41 41 H 1.09005 * 109.47188 * 191.39801 * 9 7 6 42 42 H 0.96998 * 119.99711 * 359.97438 * 10 9 7 43 43 H 1.07996 * 120.04385 * 0.03943 * 14 13 11 44 44 H 1.08003 * 119.83889 * 179.97438 * 15 14 13 45 45 H 1.07995 * 119.79894 * 180.02562 * 16 15 14 46 46 H 1.08001 * 119.96041 * 180.27424 * 17 16 15 47 47 H 0.96997 * 119.99903 * 179.72108 * 23 22 20 48 48 H 1.08997 * 109.89197 * 117.33039 * 28 4 2 49 49 H 1.09005 * 110.02306 * 356.22523 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1995 5 6 1.4342 -2.0460 1.3060 6 6 2.5463 -2.9082 1.9535 7 6 3.8223 -2.3187 1.2967 8 1 3.9902 -2.7570 0.3130 9 6 5.0413 -2.5309 2.1966 10 7 5.4063 -3.9497 2.1980 11 6 6.4581 -4.3742 2.9260 12 8 7.1043 -3.5796 3.5814 13 6 6.8254 -5.8032 2.9278 14 6 6.0856 -6.7195 2.1769 15 6 6.4335 -8.0531 2.1832 16 6 7.5150 -8.4907 2.9309 17 6 8.2588 -7.5956 3.6732 18 6 7.9198 -6.2494 3.6832 19 8 8.6460 -5.3698 4.4150 20 6 9.7542 -5.8440 5.0188 21 1 9.9834 -6.8985 4.9753 22 6 10.5997 -4.9777 5.6958 23 7 11.6805 -5.4405 6.2852 24 14 10.2071 -3.1528 5.7645 25 1 10.8313 -2.4682 4.6039 26 1 8.7351 -2.9611 5.7192 27 1 10.7426 -2.5784 7.0248 28 6 3.4886 -0.8170 1.1751 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 0.5494 -2.0277 1.9422 37 1 1.1819 -2.4291 0.3172 38 1 2.4248 -3.9601 1.6956 39 1 2.5656 -2.7726 3.0349 40 1 4.8021 -2.2163 3.2125 41 1 5.8774 -1.9410 1.8209 42 1 4.8910 -4.5835 1.6749 43 1 5.2423 -6.3835 1.5920 44 1 5.8604 -8.7607 1.6024 45 1 7.7803 -9.5375 2.9293 46 1 9.1030 -7.9436 4.2499 47 1 12.2740 -4.8340 6.7553 48 1 3.9209 -0.2719 2.0142 49 1 3.8809 -0.4247 0.2368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742841812.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:41 Heat of formation + Delta-G solvation = -56.821511 kcal Electronic energy + Delta-G solvation = -28367.282268 eV Core-core repulsion = 24486.935052 eV Total energy + Delta-G solvation = -3880.347216 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43718 -40.57968 -39.73602 -38.15226 -36.63040 -34.69474 -34.50208 -32.41221 -30.80260 -30.77868 -30.23641 -27.97195 -27.32897 -26.15320 -24.34073 -23.10689 -22.87973 -21.65934 -21.42590 -20.73044 -19.80029 -19.41138 -18.01090 -17.50232 -17.16424 -16.69179 -16.34932 -16.15131 -15.89546 -15.68950 -15.51181 -15.41973 -15.15556 -14.71998 -14.53308 -14.38514 -14.23887 -14.13003 -14.02582 -13.61541 -13.20477 -13.14160 -13.01188 -12.95222 -12.83648 -12.58900 -12.40542 -12.24473 -12.05484 -12.03001 -11.90718 -11.82043 -11.70033 -11.63976 -11.53164 -10.97469 -10.72047 -10.15084 -9.81700 -9.23619 -9.14448 -8.58451 -6.26993 0.05841 0.65218 1.23944 1.29181 1.57564 2.03332 2.20912 2.29145 2.75684 2.98246 3.02522 3.17150 3.56508 3.57803 3.85298 3.93902 4.03121 4.08895 4.12582 4.26166 4.32872 4.37545 4.42231 4.44740 4.48356 4.49857 4.59648 4.75340 4.79565 4.81922 4.83036 4.93368 4.94025 4.97469 5.02648 5.07016 5.09627 5.11963 5.28081 5.28989 5.34583 5.40044 5.47521 5.50482 5.62254 5.69766 5.83771 6.03773 6.16055 6.21349 6.64729 6.78906 7.40254 7.59033 8.52046 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014442 B = 0.002751 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.316006 B =10176.652319 C =11880.767495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.068 3.932 3 C -0.144 4.144 4 N -0.538 5.538 5 C 0.046 3.954 6 C -0.123 4.123 7 C -0.107 4.107 8 H 0.100 0.900 9 C 0.136 3.864 10 N -0.712 5.712 11 C 0.553 3.447 12 O -0.575 6.575 13 C -0.233 4.233 14 C -0.029 4.029 15 C -0.189 4.189 16 C -0.043 4.043 17 C -0.251 4.251 18 C 0.159 3.841 19 O -0.210 6.210 20 C -0.402 4.402 21 H 0.092 0.908 22 C 0.026 3.974 23 N -0.911 5.911 24 Si 0.956 3.044 25 H -0.276 1.276 26 H -0.267 1.267 27 H -0.265 1.265 28 C 0.051 3.949 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.043 0.957 33 H 0.050 0.950 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.413 0.587 43 H 0.167 0.833 44 H 0.168 0.832 45 H 0.151 0.849 46 H 0.114 0.886 47 H 0.286 0.714 48 H 0.066 0.934 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.929 4.273 -17.364 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.040 4.040 3 C -0.202 4.202 4 N -0.263 5.263 5 C -0.081 4.081 6 C -0.161 4.161 7 C -0.126 4.126 8 H 0.118 0.882 9 C 0.012 3.988 10 N -0.366 5.366 11 C 0.343 3.657 12 O -0.456 6.456 13 C -0.238 4.238 14 C -0.047 4.047 15 C -0.207 4.207 16 C -0.061 4.061 17 C -0.271 4.271 18 C 0.106 3.894 19 O -0.114 6.114 20 C -0.478 4.478 21 H 0.109 0.891 22 C -0.175 4.175 23 N -0.551 5.551 24 Si 0.780 3.220 25 H -0.202 1.202 26 H -0.192 1.192 27 H -0.190 1.190 28 C -0.077 4.077 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.251 0.749 43 H 0.184 0.816 44 H 0.185 0.815 45 H 0.168 0.832 46 H 0.132 0.868 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.484 5.479 -16.299 29.919 hybrid contribution 0.938 -0.048 -0.138 0.950 sum -23.546 5.431 -16.437 29.224 Atomic orbital electron populations 1.21869 0.93429 1.02367 1.02424 1.21878 0.96376 0.95296 0.90427 1.21860 1.00797 0.95209 1.02300 1.63681 1.05245 1.18485 1.38928 1.23032 0.97795 0.87050 1.00196 1.22824 0.92836 1.00310 1.00156 1.22530 0.93607 0.97137 0.99360 0.88199 1.21228 0.96691 0.81331 0.99536 1.45583 1.31334 1.10042 1.49671 1.18421 0.80278 0.88130 0.78904 1.90848 1.53581 1.57106 1.44021 1.19298 1.01771 0.93983 1.08698 1.21350 0.96830 0.92542 0.94017 1.21245 0.99685 0.95941 1.03831 1.21450 0.92976 0.99639 0.92026 1.21333 1.05162 0.92730 1.07831 1.19802 0.90773 0.89772 0.89038 1.83772 1.34758 1.36275 1.56590 1.20897 0.98950 0.96062 1.31938 0.89056 1.25037 0.94094 1.03315 0.95018 1.69680 1.12860 1.37881 1.34682 0.85412 0.79646 0.79311 0.77658 1.20207 1.19157 1.19001 1.22724 0.88607 0.94625 1.01776 0.91143 0.92147 0.92531 0.93895 0.93141 0.91064 0.92624 0.90046 0.92227 0.88698 0.91778 0.93195 0.93013 0.74880 0.81574 0.81482 0.83171 0.86796 0.90457 0.91526 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.97 71.98 0.65 -0.87 16 2 C 0.07 0.88 2.24 44.91 0.10 0.99 16 3 C -0.14 -1.84 9.15 71.98 0.66 -1.18 16 4 N -0.54 -8.48 5.03 -860.38 -4.33 -12.81 16 5 C 0.05 0.60 5.33 86.77 0.46 1.06 16 6 C -0.12 -1.72 6.44 31.98 0.21 -1.52 16 7 C -0.11 -1.69 2.96 -9.62 -0.03 -1.72 16 8 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 9 C 0.14 3.36 4.97 86.38 0.43 3.79 16 10 N -0.71 -18.91 5.42 -466.26 -2.53 -21.44 16 11 C 0.55 22.14 7.76 86.70 0.67 22.82 16 12 O -0.58 -30.03 15.17 16.86 0.26 -29.77 16 13 C -0.23 -9.09 5.89 -19.99 -0.12 -9.21 16 14 C -0.03 -0.76 9.54 22.52 0.21 -0.54 16 15 C -0.19 -4.53 10.02 22.25 0.22 -4.30 16 16 C -0.04 -1.29 10.03 22.30 0.22 -1.07 16 17 C -0.25 -10.72 9.16 22.36 0.20 -10.51 16 18 C 0.16 7.75 6.66 22.91 0.15 7.91 16 19 O -0.21 -12.35 6.67 0.82 0.01 -12.35 16 20 C -0.40 -24.83 9.95 67.93 0.68 -24.16 16 21 H 0.09 5.69 5.44 -2.91 -0.02 5.67 16 22 C 0.03 1.57 5.49 84.85 0.47 2.04 16 23 N -0.91 -56.24 13.96 21.62 0.30 -55.94 16 24 Si 0.96 51.59 28.62 68.60 1.96 53.55 16 25 H -0.28 -14.71 7.11 99.48 0.71 -14.01 16 26 H -0.27 -15.53 7.11 99.48 0.71 -14.82 16 27 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 28 C 0.05 0.86 5.76 86.64 0.50 1.36 16 29 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.58 6.74 -2.39 -0.02 0.56 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.54 8.10 -2.39 -0.02 0.52 16 33 H 0.05 0.69 6.81 -2.39 -0.02 0.68 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 0.63 7.32 -2.39 -0.02 0.61 16 38 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.06 1.14 7.94 -2.39 -0.02 1.12 16 40 H 0.05 1.44 8.00 -2.39 -0.02 1.42 16 41 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.41 7.35 6.50 -92.71 -0.60 6.75 16 43 H 0.17 2.55 6.40 -2.91 -0.02 2.53 16 44 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 45 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 46 H 0.11 5.34 5.64 -2.91 -0.02 5.32 16 47 H 0.29 16.24 8.31 -92.71 -0.77 15.47 16 48 H 0.07 1.33 7.82 -2.39 -0.02 1.31 16 49 H 0.07 1.01 6.67 -2.38 -0.02 0.99 16 Total: -1.00 -80.67 389.45 1.71 -78.96 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.35 Total: 14.93 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 5.69 Total: -15.13 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -6.55 Total: -90.19 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: 0.26 Total: -42.12 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 1.96 Total: 53.55 kcal Total: -80.67 1.71 -78.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742841812.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.135 kcal (2) G-P(sol) polarization free energy of solvation -80.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds