Wall clock time and date at job start Tue Mar 31 2020 16:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46955 * 2 1 4 4 N 1.46500 * 109.46849 * 180.02562 * 3 2 1 5 5 C 1.46508 * 119.99702 * 270.00021 * 4 3 2 6 6 C 1.50701 * 109.47238 * 270.00149 * 5 4 3 7 7 O 1.21284 * 119.99791 * 0.02562 * 6 5 4 8 8 N 1.34768 * 119.99808 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99938 * 180.02562 * 8 6 5 10 10 C 1.46504 * 120.00408 * 0.02562 * 8 6 5 11 11 C 1.34770 * 119.99901 * 90.00512 * 4 3 2 12 12 O 1.21282 * 119.99750 * 179.97438 * 11 4 3 13 13 C 1.50694 * 120.00237 * 359.97438 * 11 4 3 14 14 C 1.50697 * 109.47339 * 179.97438 * 13 11 4 15 15 C 1.37641 * 120.13047 * 264.99854 * 14 13 11 16 16 C 1.38614 * 120.25108 * 179.97438 * 15 14 13 17 17 C 1.38658 * 120.50209 * 0.02857 * 16 15 14 18 18 C 1.37599 * 120.24742 * 0.02562 * 17 16 15 19 19 C 1.40702 * 120.12779 * 84.72570 * 14 13 11 20 20 C 1.41392 * 120.24484 * 359.97438 * 19 14 13 21 21 H 1.08008 * 119.99829 * 333.89019 * 20 19 14 22 22 C 1.39936 * 120.00157 * 153.88802 * 20 19 14 23 23 N 1.30823 * 120.00218 * 343.72133 * 22 20 19 24 24 Si 1.86806 * 120.00088 * 163.72365 * 22 20 19 25 25 H 1.48497 * 109.46918 * 60.00210 * 24 22 20 26 26 H 1.48502 * 109.47252 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46900 * 300.00273 * 24 22 20 28 28 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47348 * 299.99559 * 1 2 3 30 30 H 1.09000 * 109.47003 * 59.99855 * 1 2 3 31 31 H 1.09007 * 109.47174 * 240.00570 * 2 1 3 32 32 H 1.08999 * 109.47442 * 120.00449 * 2 1 3 33 33 H 1.09007 * 109.46715 * 60.00289 * 3 2 1 34 34 H 1.08999 * 109.47412 * 300.00467 * 3 2 1 35 35 H 1.08993 * 109.47077 * 30.00557 * 5 4 3 36 36 H 1.09001 * 109.46340 * 150.00589 * 5 4 3 37 37 H 1.08999 * 109.46722 * 90.00615 * 9 8 6 38 38 H 1.09004 * 109.46961 * 209.99970 * 9 8 6 39 39 H 1.08996 * 109.47129 * 330.00400 * 9 8 6 40 40 H 1.09006 * 109.46578 * 59.99577 * 10 8 6 41 41 H 1.08997 * 109.47056 * 179.97438 * 10 8 6 42 42 H 1.08995 * 109.46775 * 300.00280 * 10 8 6 43 43 H 1.08993 * 109.47293 * 299.99935 * 13 11 4 44 44 H 1.09000 * 109.47007 * 60.00144 * 13 11 4 45 45 H 1.08005 * 119.87545 * 0.02562 * 15 14 13 46 46 H 1.08003 * 119.75064 * 179.97438 * 16 15 14 47 47 H 1.07996 * 119.87841 * 180.02562 * 17 16 15 48 48 H 1.07991 * 120.12832 * 179.97438 * 18 17 16 49 49 H 0.97001 * 120.00340 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4423 1.2679 6 6 4.4893 2.8631 1.7031 7 8 4.0946 3.7850 1.0211 8 7 5.1527 3.1091 2.8501 9 6 5.3966 4.4903 3.2735 10 6 5.6300 1.9954 3.6737 11 6 4.1783 1.4428 -1.1681 12 8 5.3911 1.4432 -1.1685 13 6 3.4243 1.4425 -2.4728 14 6 4.4031 1.4435 -3.6187 15 6 4.7721 2.6299 -4.2111 16 6 5.6726 2.6338 -5.2649 17 6 6.2113 1.4456 -5.7347 18 6 5.8559 0.2477 -5.1584 19 6 4.9478 0.2323 -4.0833 20 6 4.5810 -0.9920 -3.4784 21 1 4.2493 -1.0084 -2.4506 22 6 4.6478 -2.1822 -4.2112 23 7 4.7350 -2.1431 -5.5159 24 14 4.6124 -3.8271 -3.3265 25 1 3.3471 -3.9490 -2.5587 26 1 4.6948 -4.9263 -4.3216 27 1 5.7664 -3.9135 -2.3959 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.6493 0.9283 2.0276 36 1 5.1904 0.9286 1.1370 37 1 4.5676 4.8320 3.8932 38 1 6.3222 4.5363 3.8474 39 1 5.4814 5.1299 2.3951 40 1 6.3233 1.3859 3.0939 41 1 6.1396 2.3869 4.5541 42 1 4.7827 1.3848 3.9853 43 1 2.7980 0.5524 -2.5303 44 1 2.7974 2.3323 -2.5303 45 1 4.3590 3.5614 -3.8531 46 1 5.9561 3.5693 -5.7241 47 1 6.9123 1.4604 -6.5560 48 1 6.2764 -0.6765 -5.5261 49 1 4.7816 -2.9681 -6.0239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776843289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:25 Heat of formation + Delta-G solvation = -51.840123 kcal Electronic energy + Delta-G solvation = -29598.395821 eV Core-core repulsion = 25718.264615 eV Total energy + Delta-G solvation = -3880.131206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -40.23217 -38.94800 -37.31073 -35.84547 -35.49701 -33.55360 -32.84330 -31.67011 -29.55388 -29.31219 -27.79946 -26.66822 -26.06169 -25.21431 -24.44194 -21.68067 -20.86549 -20.41246 -19.36208 -18.34339 -17.16643 -17.08224 -16.76322 -16.39258 -15.70796 -15.56249 -15.13250 -14.64623 -14.49754 -14.35022 -13.67203 -13.50482 -13.43526 -13.36014 -13.05608 -12.94451 -12.83111 -12.72323 -12.51195 -12.17474 -12.07264 -12.01387 -11.72659 -11.50877 -11.45292 -11.33623 -11.11834 -11.01122 -10.88551 -10.61884 -10.55234 -10.34735 -9.98546 -9.39781 -9.29238 -9.11361 -9.08371 -8.81705 -8.34866 -7.22547 -7.21120 -6.67043 -4.27459 2.63757 2.74150 2.86941 3.05598 3.08618 3.11622 3.33533 3.40476 3.49616 3.97420 4.51615 4.72291 4.83896 4.87965 4.96597 5.05190 5.13790 5.17810 5.28695 5.34535 5.40859 5.44679 5.45991 5.64678 5.66398 5.69833 5.82884 5.90390 6.02470 6.11130 6.14557 6.22701 6.30046 6.33086 6.39363 6.54169 6.60377 6.74050 6.87951 7.14988 7.22495 7.37966 7.50469 7.69814 7.81316 8.01899 8.14485 8.16613 8.21121 8.39458 8.71633 8.88294 8.98813 9.09379 10.27158 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010309 B = 0.004173 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.425048 B = 6707.807306 C = 7724.255863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.118 3.882 4 N -0.610 5.610 5 C 0.102 3.898 6 C 0.497 3.503 7 O -0.525 6.525 8 N -0.628 5.628 9 C 0.087 3.913 10 C 0.078 3.922 11 C 0.526 3.474 12 O -0.519 6.519 13 C -0.066 4.066 14 C -0.180 4.180 15 C -0.081 4.081 16 C -0.238 4.238 17 C -0.108 4.108 18 C -0.160 4.160 19 C 0.130 3.870 20 C -0.456 4.456 21 H 0.073 0.927 22 C 0.078 3.922 23 N -0.796 5.796 24 Si 0.901 3.099 25 H -0.266 1.266 26 H -0.279 1.279 27 H -0.265 1.265 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.051 0.949 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.117 0.883 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.049 3.069 17.315 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.006 4.006 4 N -0.345 5.345 5 C -0.026 4.026 6 C 0.284 3.716 7 O -0.400 6.400 8 N -0.365 5.365 9 C -0.056 4.056 10 C -0.065 4.065 11 C 0.316 3.684 12 O -0.392 6.392 13 C -0.106 4.106 14 C -0.182 4.182 15 C -0.099 4.099 16 C -0.258 4.258 17 C -0.126 4.126 18 C -0.179 4.179 19 C 0.127 3.873 20 C -0.486 4.486 21 H 0.091 0.909 22 C -0.139 4.139 23 N -0.422 5.422 24 Si 0.726 3.274 25 H -0.191 1.191 26 H -0.204 1.204 27 H -0.190 1.190 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.135 0.865 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.586 3.408 16.692 17.643 hybrid contribution 0.064 -0.768 0.579 0.964 sum -4.523 2.640 17.271 18.048 Atomic orbital electron populations 1.21684 0.95254 1.01874 1.01777 1.22038 0.96037 0.97340 1.03281 1.21573 0.79191 0.96557 1.03248 1.47753 1.06408 1.75773 1.04527 1.21174 1.00362 0.93149 0.87879 1.21504 0.77401 0.92871 0.79833 1.90693 1.50111 1.46303 1.52845 1.47811 1.57878 1.07334 1.23461 1.21623 1.00393 0.82726 1.00868 1.21821 0.99769 0.89513 0.95381 1.21244 0.88355 0.73945 0.84869 1.90659 1.14240 1.47428 1.86884 1.20288 0.97763 1.02688 0.89841 1.19099 1.04218 0.93949 1.00891 1.20327 0.97713 0.95516 0.96328 1.20305 1.06279 0.96227 1.02969 1.20670 0.99501 0.93511 0.98943 1.21283 1.00277 0.96323 1.00012 1.17321 0.88229 0.91336 0.90388 1.19409 1.39682 0.90868 0.98656 0.90915 1.25853 0.92491 1.01063 0.94521 1.69815 1.35996 1.30011 1.06400 0.86486 0.79862 0.80929 0.80139 1.19073 1.20389 1.18951 0.92518 0.92996 0.92287 0.90535 0.91995 0.91169 0.89849 0.88233 0.87047 0.93047 0.91424 0.90623 0.91675 0.90442 0.92001 0.88537 0.90605 0.89772 0.89718 0.89641 0.86546 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 37.16 0.37 -1.06 16 2 C -0.15 -1.74 6.26 -26.73 -0.17 -1.90 16 3 C 0.12 1.52 5.21 -4.04 -0.02 1.50 16 4 N -0.61 -9.96 1.96 -175.05 -0.34 -10.30 16 5 C 0.10 1.40 4.70 -5.19 -0.02 1.37 16 6 C 0.50 7.46 7.74 -10.99 -0.09 7.37 16 7 O -0.52 -10.03 16.01 5.55 0.09 -9.94 16 8 N -0.63 -7.11 3.27 -189.51 -0.62 -7.73 16 9 C 0.09 0.85 10.41 59.85 0.62 1.47 16 10 C 0.08 0.56 9.74 59.85 0.58 1.14 16 11 C 0.53 11.05 7.28 -10.99 -0.08 10.97 16 12 O -0.52 -13.04 15.61 5.56 0.09 -12.95 16 13 C -0.07 -1.39 3.73 -29.04 -0.11 -1.50 16 14 C -0.18 -4.53 4.43 -103.91 -0.46 -4.99 16 15 C -0.08 -1.98 9.66 -39.66 -0.38 -2.36 16 16 C -0.24 -5.83 10.05 -39.29 -0.39 -6.22 16 17 C -0.11 -2.72 10.02 -39.66 -0.40 -3.12 16 18 C -0.16 -4.37 8.69 -38.87 -0.34 -4.71 16 19 C 0.13 3.55 5.56 -106.82 -0.59 2.95 16 20 C -0.46 -12.11 8.14 -37.75 -0.31 -12.42 16 21 H 0.07 1.87 6.67 -52.48 -0.35 1.52 16 22 C 0.08 1.97 5.16 -17.35 -0.09 1.88 16 23 N -0.80 -20.76 10.96 55.55 0.61 -20.15 16 24 Si 0.90 18.86 29.59 -169.99 -5.03 13.83 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 27 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.08 7.22 -51.93 -0.37 0.70 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.08 1.10 6.44 -51.93 -0.33 0.76 16 35 H 0.10 0.97 7.80 -51.93 -0.40 0.56 16 36 H 0.11 1.63 7.14 -51.93 -0.37 1.26 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.48 7.92 -51.93 -0.41 0.07 16 39 H 0.08 0.91 7.42 -51.93 -0.39 0.53 16 40 H 0.06 0.48 7.85 -51.93 -0.41 0.08 16 41 H 0.08 0.39 7.79 -51.93 -0.40 -0.02 16 42 H 0.06 0.34 7.85 -51.93 -0.41 -0.06 16 43 H 0.10 1.96 6.13 -51.93 -0.32 1.64 16 44 H 0.08 1.42 7.31 -51.93 -0.38 1.04 16 45 H 0.08 1.88 8.06 -52.48 -0.42 1.46 16 46 H 0.08 1.85 8.06 -52.48 -0.42 1.42 16 47 H 0.09 1.93 8.06 -52.49 -0.42 1.51 16 48 H 0.12 3.26 6.20 -52.49 -0.33 2.93 16 49 H 0.28 6.66 8.30 -40.82 -0.34 6.33 16 LS Contribution 400.43 15.07 6.03 6.03 Total: -1.00 -34.83 400.43 -8.86 -43.69 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -7.81 Total: 7.15 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -1.88 Total: -9.63 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: -0.36 Total: -38.18 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.18 Total: -22.89 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.83 -8.86 -43.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776843289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.149 kcal (2) G-P(sol) polarization free energy of solvation -34.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds