Wall clock time and date at job start Tue Mar 31 2020 16:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46955 * 2 1 4 4 N 1.46500 * 109.46849 * 180.02562 * 3 2 1 5 5 C 1.46508 * 119.99702 * 270.00021 * 4 3 2 6 6 C 1.50701 * 109.47238 * 270.00149 * 5 4 3 7 7 O 1.21284 * 119.99791 * 0.02562 * 6 5 4 8 8 N 1.34768 * 119.99808 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99938 * 180.02562 * 8 6 5 10 10 C 1.46504 * 120.00408 * 0.02562 * 8 6 5 11 11 C 1.34770 * 119.99901 * 90.00512 * 4 3 2 12 12 O 1.21282 * 119.99750 * 179.97438 * 11 4 3 13 13 C 1.50694 * 120.00237 * 359.97438 * 11 4 3 14 14 C 1.50697 * 109.47339 * 179.97438 * 13 11 4 15 15 C 1.37641 * 120.13047 * 264.99854 * 14 13 11 16 16 C 1.38614 * 120.25108 * 179.97438 * 15 14 13 17 17 C 1.38658 * 120.50209 * 0.02857 * 16 15 14 18 18 C 1.37599 * 120.24742 * 0.02562 * 17 16 15 19 19 C 1.40702 * 120.12779 * 84.72570 * 14 13 11 20 20 C 1.41392 * 120.24484 * 359.97438 * 19 14 13 21 21 H 1.08008 * 119.99829 * 333.89019 * 20 19 14 22 22 C 1.39936 * 120.00157 * 153.88802 * 20 19 14 23 23 N 1.30823 * 120.00218 * 343.72133 * 22 20 19 24 24 Si 1.86806 * 120.00088 * 163.72365 * 22 20 19 25 25 H 1.48497 * 109.46918 * 60.00210 * 24 22 20 26 26 H 1.48502 * 109.47252 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46900 * 300.00273 * 24 22 20 28 28 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47348 * 299.99559 * 1 2 3 30 30 H 1.09000 * 109.47003 * 59.99855 * 1 2 3 31 31 H 1.09007 * 109.47174 * 240.00570 * 2 1 3 32 32 H 1.08999 * 109.47442 * 120.00449 * 2 1 3 33 33 H 1.09007 * 109.46715 * 60.00289 * 3 2 1 34 34 H 1.08999 * 109.47412 * 300.00467 * 3 2 1 35 35 H 1.08993 * 109.47077 * 30.00557 * 5 4 3 36 36 H 1.09001 * 109.46340 * 150.00589 * 5 4 3 37 37 H 1.08999 * 109.46722 * 90.00615 * 9 8 6 38 38 H 1.09004 * 109.46961 * 209.99970 * 9 8 6 39 39 H 1.08996 * 109.47129 * 330.00400 * 9 8 6 40 40 H 1.09006 * 109.46578 * 59.99577 * 10 8 6 41 41 H 1.08997 * 109.47056 * 179.97438 * 10 8 6 42 42 H 1.08995 * 109.46775 * 300.00280 * 10 8 6 43 43 H 1.08993 * 109.47293 * 299.99935 * 13 11 4 44 44 H 1.09000 * 109.47007 * 60.00144 * 13 11 4 45 45 H 1.08005 * 119.87545 * 0.02562 * 15 14 13 46 46 H 1.08003 * 119.75064 * 179.97438 * 16 15 14 47 47 H 1.07996 * 119.87841 * 180.02562 * 17 16 15 48 48 H 1.07991 * 120.12832 * 179.97438 * 18 17 16 49 49 H 0.97001 * 120.00340 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2380 1.4423 1.2679 6 6 4.4893 2.8631 1.7031 7 8 4.0946 3.7850 1.0211 8 7 5.1527 3.1091 2.8501 9 6 5.3966 4.4903 3.2735 10 6 5.6300 1.9954 3.6737 11 6 4.1783 1.4428 -1.1681 12 8 5.3911 1.4432 -1.1685 13 6 3.4243 1.4425 -2.4728 14 6 4.4031 1.4435 -3.6187 15 6 4.7721 2.6299 -4.2111 16 6 5.6726 2.6338 -5.2649 17 6 6.2113 1.4456 -5.7347 18 6 5.8559 0.2477 -5.1584 19 6 4.9478 0.2323 -4.0833 20 6 4.5810 -0.9920 -3.4784 21 1 4.2493 -1.0084 -2.4506 22 6 4.6478 -2.1822 -4.2112 23 7 4.7350 -2.1431 -5.5159 24 14 4.6124 -3.8271 -3.3265 25 1 3.3471 -3.9490 -2.5587 26 1 4.6948 -4.9263 -4.3216 27 1 5.7664 -3.9135 -2.3959 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6766 1.9564 -0.8899 35 1 3.6493 0.9283 2.0276 36 1 5.1904 0.9286 1.1370 37 1 4.5676 4.8320 3.8932 38 1 6.3222 4.5363 3.8474 39 1 5.4814 5.1299 2.3951 40 1 6.3233 1.3859 3.0939 41 1 6.1396 2.3869 4.5541 42 1 4.7827 1.3848 3.9853 43 1 2.7980 0.5524 -2.5303 44 1 2.7974 2.3323 -2.5303 45 1 4.3590 3.5614 -3.8531 46 1 5.9561 3.5693 -5.7241 47 1 6.9123 1.4604 -6.5560 48 1 6.2764 -0.6765 -5.5261 49 1 4.7816 -2.9681 -6.0239 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776843289.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:51:23 Heat of formation + Delta-G solvation = -72.133989 kcal Electronic energy + Delta-G solvation = -29599.275830 eV Core-core repulsion = 25718.264615 eV Total energy + Delta-G solvation = -3881.011215 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.50996 -40.34139 -39.12286 -37.17193 -36.52169 -35.49430 -33.94373 -33.41547 -31.36648 -30.61247 -28.83843 -28.05805 -27.06026 -26.91286 -25.76487 -22.83751 -22.69858 -21.97846 -20.73378 -19.69991 -19.02846 -18.23093 -18.15039 -17.58300 -17.21618 -16.68989 -16.51906 -16.25191 -16.01924 -15.52248 -15.35828 -15.14165 -14.72587 -14.38707 -14.34717 -14.28956 -14.07452 -13.61981 -13.53074 -13.47790 -13.36778 -13.06590 -12.98356 -12.92415 -12.85107 -12.76756 -12.73099 -12.49992 -12.46863 -12.18083 -12.10562 -11.56239 -11.31815 -11.20868 -11.17855 -11.01104 -10.76875 -9.70758 -9.65214 -9.23631 -9.17163 -8.57728 -6.28148 0.99481 1.12060 1.36982 1.47903 1.52385 1.55555 1.67079 1.93596 2.21700 2.31473 2.79257 3.56893 3.63690 3.90044 3.99943 4.13587 4.17957 4.27240 4.31342 4.36994 4.41248 4.44217 4.49051 4.49619 4.57124 4.59499 4.68526 4.75275 4.77084 4.78751 4.87212 4.92898 4.98701 5.04231 5.20052 5.20476 5.30400 5.36534 5.45232 5.50414 5.54164 5.60067 5.76450 6.03363 6.15541 6.20246 6.27722 6.39161 6.42172 6.73026 7.00168 7.09738 7.10920 7.33363 8.38901 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010309 B = 0.004173 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.425048 B = 6707.807306 C = 7724.255863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.142 4.142 3 C 0.113 3.887 4 N -0.603 5.603 5 C 0.099 3.901 6 C 0.489 3.511 7 O -0.578 6.578 8 N -0.624 5.624 9 C 0.083 3.917 10 C 0.069 3.931 11 C 0.525 3.475 12 O -0.572 6.572 13 C -0.063 4.063 14 C -0.189 4.189 15 C -0.095 4.095 16 C -0.244 4.244 17 C -0.116 4.116 18 C -0.192 4.192 19 C 0.100 3.900 20 C -0.479 4.479 21 H 0.072 0.928 22 C 0.037 3.963 23 N -0.826 5.826 24 Si 0.971 3.029 25 H -0.250 1.250 26 H -0.268 1.268 27 H -0.269 1.269 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.148 0.852 36 H 0.101 0.899 37 H 0.066 0.934 38 H 0.098 0.902 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.261 2.444 20.215 21.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C -0.009 4.009 4 N -0.335 5.335 5 C -0.027 4.027 6 C 0.277 3.723 7 O -0.458 6.458 8 N -0.358 5.358 9 C -0.059 4.059 10 C -0.072 4.072 11 C 0.315 3.685 12 O -0.450 6.450 13 C -0.102 4.102 14 C -0.191 4.191 15 C -0.113 4.113 16 C -0.263 4.263 17 C -0.134 4.134 18 C -0.211 4.211 19 C 0.098 3.902 20 C -0.509 4.509 21 H 0.090 0.910 22 C -0.177 4.177 23 N -0.452 5.452 24 Si 0.792 3.208 25 H -0.174 1.174 26 H -0.192 1.192 27 H -0.193 1.193 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.096 0.904 35 H 0.165 0.835 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.123 0.877 42 H 0.104 0.896 43 H 0.118 0.882 44 H 0.114 0.886 45 H 0.122 0.878 46 H 0.131 0.869 47 H 0.125 0.875 48 H 0.118 0.882 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.827 2.781 19.658 20.691 hybrid contribution 0.446 -0.482 -0.249 0.703 sum -5.381 2.298 19.409 20.272 Atomic orbital electron populations 1.21662 0.93414 1.02487 1.02625 1.21964 0.97536 0.95973 1.02561 1.21828 0.77040 0.97804 1.04237 1.47705 1.07853 1.73702 1.04221 1.21431 1.00576 0.93122 0.87584 1.21684 0.77519 0.92611 0.80514 1.90667 1.52771 1.47574 1.54753 1.47957 1.56098 1.09087 1.22642 1.21757 1.02611 0.81539 1.00026 1.22143 1.00906 0.88620 0.95567 1.21086 0.87640 0.73667 0.86102 1.90626 1.16233 1.50392 1.87788 1.20243 0.97070 1.03730 0.89146 1.19548 1.04307 0.93567 1.01686 1.20691 0.97911 0.96251 0.96469 1.20667 1.05781 0.97049 1.02807 1.20942 0.99818 0.93232 0.99418 1.21316 1.01724 0.96569 1.01516 1.17706 0.88870 0.92695 0.90979 1.19569 1.40924 0.91657 0.98750 0.91020 1.26687 0.91508 1.04439 0.95091 1.69879 1.36157 1.31374 1.07804 0.85419 0.80166 0.76224 0.78990 1.17410 1.19193 1.19337 0.92031 0.91013 0.92625 0.93407 0.90556 0.88731 0.90378 0.83500 0.88111 0.91513 0.88337 0.93673 0.92079 0.87703 0.89640 0.88237 0.88605 0.87770 0.86934 0.87469 0.88166 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.14 -3.04 6.26 30.60 0.19 -2.85 16 3 C 0.11 2.73 5.21 86.38 0.45 3.18 16 4 N -0.60 -19.26 1.96 -826.14 -1.62 -20.88 16 5 C 0.10 2.58 4.70 85.63 0.40 2.98 16 6 C 0.49 14.23 7.74 87.66 0.68 14.91 16 7 O -0.58 -22.28 16.01 -3.04 -0.05 -22.32 16 8 N -0.62 -12.90 3.27 -871.87 -2.85 -15.76 16 9 C 0.08 1.49 10.41 127.77 1.33 2.81 16 10 C 0.07 0.77 9.74 127.77 1.24 2.01 16 11 C 0.52 22.45 7.28 87.66 0.64 23.09 16 12 O -0.57 -29.78 15.61 -3.04 -0.05 -29.82 16 13 C -0.06 -2.68 3.73 29.10 0.11 -2.57 16 14 C -0.19 -9.81 4.43 -19.40 -0.09 -9.90 16 15 C -0.10 -4.73 9.66 22.22 0.21 -4.51 16 16 C -0.24 -11.96 10.05 22.46 0.23 -11.73 16 17 C -0.12 -5.97 10.02 22.22 0.22 -5.75 16 18 C -0.19 -10.95 8.69 22.73 0.20 -10.75 16 19 C 0.10 5.67 5.56 -21.29 -0.12 5.55 16 20 C -0.48 -26.29 8.14 23.46 0.19 -26.09 16 21 H 0.07 3.81 6.67 -2.91 -0.02 3.79 16 22 C 0.04 1.92 5.16 85.25 0.44 2.36 16 23 N -0.83 -44.18 10.96 21.82 0.24 -43.94 16 24 Si 0.97 38.77 29.59 68.60 2.03 40.80 16 25 H -0.25 -9.29 7.11 99.48 0.71 -8.59 16 26 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 27 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 1.31 7.22 -2.38 -0.02 1.30 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.87 8.07 -2.38 -0.02 1.85 16 34 H 0.08 1.97 6.44 -2.39 -0.02 1.96 16 35 H 0.15 2.32 7.80 -2.39 -0.02 2.30 16 36 H 0.10 2.89 7.14 -2.39 -0.02 2.88 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.10 1.13 7.92 -2.38 -0.02 1.11 16 39 H 0.04 1.10 7.42 -2.39 -0.02 1.08 16 40 H 0.06 0.77 7.85 -2.38 -0.02 0.75 16 41 H 0.10 0.62 7.79 -2.39 -0.02 0.60 16 42 H 0.09 0.59 7.85 -2.39 -0.02 0.57 16 43 H 0.10 4.15 6.13 -2.39 -0.01 4.13 16 44 H 0.10 3.61 7.31 -2.39 -0.02 3.60 16 45 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 46 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 47 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 48 H 0.10 5.91 6.20 -2.92 -0.02 5.89 16 49 H 0.29 13.91 8.30 -92.71 -0.77 13.14 16 Total: -1.00 -80.28 400.43 5.68 -74.60 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: 0.93 Total: 36.28 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 7.05 Total: -18.96 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -4.24 Total: -80.57 kcal Atomic # 8 Polarization: -52.05 SS G_CDS: -0.10 Total: -52.15 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -80.28 5.68 -74.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776843289.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.465 kcal (2) G-P(sol) polarization free energy of solvation -80.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds