Wall clock time and date at job start Tue Mar 31 2020 16:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47296 * 2 1 4 4 N 1.46904 * 109.46863 * 180.02562 * 3 2 1 5 5 C 1.48671 * 111.10745 * 288.24932 * 4 3 2 6 6 C 1.54378 * 104.67431 * 201.09756 * 5 4 3 7 7 C 1.54263 * 105.05619 * 23.77592 * 6 5 4 8 8 C 1.48554 * 110.99879 * 172.83503 * 4 3 2 9 9 H 1.08998 * 110.41820 * 40.13995 * 8 4 3 10 10 C 1.53004 * 110.41014 * 277.81619 * 8 4 3 11 11 N 1.46505 * 109.47195 * 179.24559 * 10 8 4 12 12 C 1.34773 * 120.00111 * 184.83586 * 11 10 8 13 13 O 1.21588 * 119.99952 * 0.02562 * 12 11 10 14 14 C 1.47538 * 120.00001 * 180.02562 * 12 11 10 15 15 C 1.39669 * 120.19395 * 359.97438 * 14 12 11 16 16 C 1.37826 * 119.91295 * 180.02562 * 15 14 12 17 17 C 1.38570 * 120.32716 * 0.02733 * 16 15 14 18 18 C 1.38028 * 120.40167 * 359.67357 * 17 16 15 19 19 C 1.38831 * 120.06893 * 0.60296 * 18 17 16 20 20 O 1.35522 * 120.16238 * 179.70079 * 19 18 17 21 21 C 1.34817 * 116.99601 * 6.00812 * 20 19 18 22 22 H 1.07997 * 120.00442 * 354.92705 * 21 20 19 23 23 C 1.38703 * 119.99826 * 174.93416 * 21 20 19 24 24 N 1.31520 * 119.99805 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00024 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.46500 * 270.00057 * 25 23 21 27 27 H 1.48502 * 109.47085 * 29.99412 * 25 23 21 28 28 H 1.48497 * 109.47262 * 149.99969 * 25 23 21 29 29 H 1.09002 * 109.46899 * 59.99818 * 1 2 3 30 30 H 1.09000 * 109.47497 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46815 * 300.00291 * 1 2 3 32 32 H 1.09004 * 109.46815 * 239.99709 * 2 1 3 33 33 H 1.09002 * 109.46899 * 120.00182 * 2 1 3 34 34 H 1.08997 * 109.47068 * 59.99956 * 3 2 1 35 35 H 1.09003 * 109.46789 * 299.99796 * 3 2 1 36 36 H 1.09002 * 110.44448 * 82.25918 * 5 4 3 37 37 H 1.09000 * 110.40923 * 319.92183 * 5 4 3 38 38 H 1.08996 * 110.32813 * 264.87747 * 6 5 4 39 39 H 1.09005 * 110.32614 * 142.66584 * 6 5 4 40 40 H 1.09001 * 110.32333 * 241.09870 * 7 6 5 41 41 H 1.08998 * 110.41066 * 118.94062 * 7 6 5 42 42 H 1.09000 * 109.47215 * 59.24691 * 10 8 4 43 43 H 1.09000 * 109.47276 * 299.24422 * 10 8 4 44 44 H 0.97004 * 119.99479 * 4.83281 * 11 10 8 45 45 H 1.07991 * 120.04430 * 0.02562 * 15 14 12 46 46 H 1.08007 * 119.83416 * 180.02562 * 16 15 14 47 47 H 1.08007 * 119.79960 * 179.97438 * 17 16 15 48 48 H 1.07996 * 119.96570 * 180.30015 * 18 17 16 49 49 H 0.96998 * 119.99284 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4423 -0.0006 5 6 4.0450 1.0078 1.3163 6 6 5.4857 1.5611 1.3541 7 6 5.4833 2.7523 0.3739 8 6 4.0414 2.8184 -0.1736 9 1 3.4489 3.5304 0.4009 10 6 4.0500 3.2050 -1.6540 11 7 4.5611 4.5703 -1.7992 12 6 4.5682 5.1620 -3.0101 13 8 4.1499 4.5628 -3.9819 14 6 5.0835 6.5367 -3.1564 15 6 5.5644 7.2288 -2.0427 16 6 6.0440 8.5130 -2.1860 17 6 6.0511 9.1225 -3.4304 18 6 5.5847 8.4485 -4.5410 19 6 5.0926 7.1565 -4.4147 20 8 4.6286 6.4952 -5.5028 21 6 4.7862 7.0978 -6.6985 22 1 5.1894 8.0984 -6.7500 23 6 4.4304 6.4328 -7.8625 24 7 4.5838 7.0209 -9.0289 25 14 3.7323 4.7024 -7.7735 26 1 4.8411 3.7171 -7.8443 27 1 2.9980 4.5301 -6.4943 28 1 2.8029 4.4845 -8.9110 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 4.0537 -0.0801 1.3836 37 1 3.4530 1.4331 2.1267 38 1 6.1924 0.8000 1.0233 39 1 5.7353 1.8990 2.3599 40 1 6.1889 2.5759 -0.4380 41 1 5.7324 3.6755 0.8971 42 1 3.0354 3.1530 -2.0490 43 1 4.6904 2.5167 -2.2056 44 1 4.8944 5.0484 -1.0238 45 1 5.5606 6.7584 -1.0707 46 1 6.4160 9.0469 -1.3239 47 1 6.4285 10.1293 -3.5328 48 1 5.5981 8.9285 -5.5083 49 1 4.3346 6.5558 -9.8429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804778637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:14 Heat of formation + Delta-G solvation = -37.633505 kcal Electronic energy + Delta-G solvation = -28579.200117 eV Core-core repulsion = 24699.684956 eV Total energy + Delta-G solvation = -3879.515161 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.99200 -39.42788 -38.09238 -36.51325 -35.05796 -34.09225 -32.43939 -31.22887 -30.98337 -29.45253 -29.18923 -25.94757 -25.43324 -24.91817 -22.95957 -22.20127 -21.30678 -20.80252 -20.32322 -19.95741 -17.91763 -17.84835 -16.51524 -16.45348 -15.87546 -15.39925 -15.23924 -14.88621 -14.68913 -14.30200 -14.24699 -13.97259 -13.89137 -13.72195 -13.45794 -13.24436 -13.17224 -12.72275 -12.66885 -12.34411 -12.15649 -12.06834 -11.93405 -11.60258 -11.54849 -11.39820 -11.26284 -11.17674 -10.97109 -10.85125 -10.83103 -10.72317 -10.69627 -10.03229 -9.61026 -9.05020 -8.87726 -8.78808 -8.70827 -8.37157 -7.47323 -6.46010 -4.11057 1.58337 2.19030 3.27113 3.33559 3.40408 3.59681 3.68625 3.94573 4.30313 4.36964 4.37525 4.53190 4.64713 4.74195 4.75072 4.84234 4.89651 5.03864 5.09702 5.10485 5.20446 5.22664 5.32320 5.38102 5.39097 5.45041 5.46438 5.54955 5.63828 5.64954 5.76333 5.79320 5.84718 5.88638 5.94470 5.95990 6.03891 6.04345 6.08671 6.37922 6.55315 6.57595 6.72145 6.82268 6.86862 7.01405 7.15063 7.48500 7.68518 7.95518 7.97099 8.87542 8.91552 9.52935 10.59081 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.003266 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.202272 B = 8572.276588 C =10461.280011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.042 3.958 4 N -0.503 5.503 5 C 0.034 3.966 6 C -0.124 4.124 7 C -0.123 4.123 8 C 0.053 3.947 9 H 0.057 0.943 10 C 0.139 3.861 11 N -0.740 5.740 12 C 0.561 3.439 13 O -0.517 6.517 14 C -0.225 4.225 15 C -0.041 4.041 16 C -0.222 4.222 17 C -0.051 4.051 18 C -0.227 4.227 19 C 0.201 3.799 20 O -0.165 6.165 21 C -0.396 4.396 22 H 0.108 0.892 23 C 0.072 3.928 24 N -0.870 5.870 25 Si 0.900 3.100 26 H -0.274 1.274 27 H -0.239 1.239 28 H -0.287 1.287 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.035 0.965 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.392 0.608 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.138 0.862 49 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.179 -8.708 22.972 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.087 4.087 4 N -0.228 5.228 5 C -0.094 4.094 6 C -0.162 4.162 7 C -0.161 4.161 8 C -0.056 4.056 9 H 0.075 0.925 10 C 0.015 3.985 11 N -0.396 5.396 12 C 0.351 3.649 13 O -0.392 6.392 14 C -0.230 4.230 15 C -0.060 4.060 16 C -0.241 4.241 17 C -0.070 4.070 18 C -0.246 4.246 19 C 0.143 3.857 20 O -0.065 6.065 21 C -0.471 4.471 22 H 0.125 0.875 23 C -0.134 4.134 24 N -0.506 5.506 25 Si 0.725 3.275 26 H -0.199 1.199 27 H -0.162 1.162 28 H -0.213 1.213 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.227 0.773 45 H 0.130 0.870 46 H 0.130 0.870 47 H 0.132 0.868 48 H 0.156 0.844 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.506 -9.775 21.485 23.652 hybrid contribution -0.354 0.319 0.903 1.021 sum -1.860 -9.456 22.388 24.374 Atomic orbital electron populations 1.21750 0.95619 1.01772 1.01891 1.21462 0.95376 0.96086 1.02618 1.22392 0.87365 0.97659 1.01255 1.65203 1.08061 1.19856 1.29641 1.23130 0.95171 1.01010 0.90041 1.22289 0.96607 0.97993 0.99313 1.22395 0.96017 0.98368 0.99296 1.22817 0.96038 0.90533 0.96231 0.92475 1.21028 1.00172 0.83358 0.93981 1.45798 1.67506 1.15876 1.10421 1.18171 0.78373 0.86082 0.82301 1.90862 1.45769 1.65021 1.37576 1.18859 1.16065 0.95347 0.92751 1.20745 0.95190 0.94259 0.95781 1.20533 1.09855 0.96358 0.97315 1.20962 0.95294 0.98429 0.92292 1.21287 1.07496 0.95521 1.00277 1.19024 0.89581 0.90200 0.86883 1.83784 1.65814 1.43617 1.13310 1.20927 1.44359 1.01785 0.80070 0.87452 1.24496 0.95554 0.99993 0.93320 1.69641 1.44667 1.38629 0.97627 0.86196 0.79942 0.82112 0.79239 1.19892 1.16153 1.21263 0.92430 0.92528 0.92981 0.90973 0.92256 0.94632 0.90323 0.90026 0.93900 0.90864 0.91372 0.90264 0.91151 0.91682 0.91031 0.77316 0.86950 0.87042 0.86848 0.84428 0.90834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.98 6.01 -26.73 -0.16 -1.14 16 3 C 0.04 0.39 4.76 -3.82 -0.02 0.37 16 4 N -0.50 -5.03 5.04 -222.05 -1.12 -6.14 16 5 C 0.03 0.27 5.82 -2.12 -0.01 0.26 16 6 C -0.12 -0.93 7.00 -25.35 -0.18 -1.10 16 7 C -0.12 -1.07 6.11 -25.35 -0.15 -1.22 16 8 C 0.05 0.54 2.38 -66.07 -0.16 0.38 16 9 H 0.06 0.56 7.99 -51.93 -0.42 0.14 16 10 C 0.14 1.91 5.22 -4.04 -0.02 1.89 16 11 N -0.74 -10.95 5.35 -61.34 -0.33 -11.28 16 12 C 0.56 11.44 7.76 -12.47 -0.10 11.34 16 13 O -0.52 -13.05 15.16 -16.57 -0.25 -13.30 16 14 C -0.23 -4.58 5.89 -104.81 -0.62 -5.19 16 15 C -0.04 -0.65 9.54 -39.20 -0.37 -1.02 16 16 C -0.22 -3.41 10.02 -39.61 -0.40 -3.80 16 17 C -0.05 -0.87 10.03 -39.54 -0.40 -1.27 16 18 C -0.23 -4.79 9.16 -39.44 -0.36 -5.16 16 19 C 0.20 4.77 6.66 -38.60 -0.26 4.51 16 20 O -0.17 -4.58 6.67 -21.07 -0.14 -4.72 16 21 C -0.40 -11.42 9.95 30.90 0.31 -11.11 16 22 H 0.11 3.07 5.44 -52.49 -0.29 2.79 16 23 C 0.07 2.08 5.49 -17.51 -0.10 1.99 16 24 N -0.87 -25.46 13.96 55.48 0.77 -24.69 16 25 Si 0.90 23.51 28.62 -169.99 -4.86 18.64 16 26 H -0.27 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.24 -6.58 7.11 56.52 0.40 -6.18 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.45 7.35 -51.93 -0.38 0.07 16 34 H 0.04 0.31 7.84 -51.93 -0.41 -0.10 16 35 H 0.08 0.83 7.20 -51.93 -0.37 0.46 16 36 H 0.08 0.61 7.81 -51.93 -0.41 0.20 16 37 H 0.04 0.32 7.80 -51.93 -0.40 -0.08 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.79 7.81 -51.93 -0.41 0.38 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 1.00 7.28 -51.93 -0.38 0.62 16 43 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 44 H 0.39 4.54 6.24 -40.82 -0.25 4.28 16 45 H 0.11 1.32 6.40 -52.49 -0.34 0.99 16 46 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 47 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 48 H 0.14 3.02 5.64 -52.49 -0.30 2.73 16 49 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 392.15 15.07 5.91 5.91 Total: -1.00 -32.93 392.15 -10.35 -43.28 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.70 Total: 3.34 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.62 Total: -11.04 kcal Atomic # 7 Polarization: -41.44 SS G_CDS: -0.67 Total: -42.11 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.39 Total: -18.02 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.86 Total: 18.64 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.93 -10.35 -43.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804778637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.646 kcal (2) G-P(sol) polarization free energy of solvation -32.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds