Wall clock time and date at job start Tue Mar 31 2020 16:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47296 * 2 1 4 4 N 1.46904 * 109.46863 * 180.02562 * 3 2 1 5 5 C 1.48671 * 111.10745 * 288.24932 * 4 3 2 6 6 C 1.54378 * 104.67431 * 201.09756 * 5 4 3 7 7 C 1.54263 * 105.05619 * 23.77592 * 6 5 4 8 8 C 1.48554 * 110.99879 * 172.83503 * 4 3 2 9 9 H 1.08998 * 110.41820 * 40.13995 * 8 4 3 10 10 C 1.53004 * 110.41014 * 277.81619 * 8 4 3 11 11 N 1.46505 * 109.47195 * 179.24559 * 10 8 4 12 12 C 1.34773 * 120.00111 * 184.83586 * 11 10 8 13 13 O 1.21588 * 119.99952 * 0.02562 * 12 11 10 14 14 C 1.47538 * 120.00001 * 180.02562 * 12 11 10 15 15 C 1.39669 * 120.19395 * 359.97438 * 14 12 11 16 16 C 1.37826 * 119.91295 * 180.02562 * 15 14 12 17 17 C 1.38570 * 120.32716 * 0.02733 * 16 15 14 18 18 C 1.38028 * 120.40167 * 359.67357 * 17 16 15 19 19 C 1.38831 * 120.06893 * 0.60296 * 18 17 16 20 20 O 1.35522 * 120.16238 * 179.70079 * 19 18 17 21 21 C 1.34817 * 116.99601 * 6.00812 * 20 19 18 22 22 H 1.07997 * 120.00442 * 354.92705 * 21 20 19 23 23 C 1.38703 * 119.99826 * 174.93416 * 21 20 19 24 24 N 1.31520 * 119.99805 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00024 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.46500 * 270.00057 * 25 23 21 27 27 H 1.48502 * 109.47085 * 29.99412 * 25 23 21 28 28 H 1.48497 * 109.47262 * 149.99969 * 25 23 21 29 29 H 1.09002 * 109.46899 * 59.99818 * 1 2 3 30 30 H 1.09000 * 109.47497 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46815 * 300.00291 * 1 2 3 32 32 H 1.09004 * 109.46815 * 239.99709 * 2 1 3 33 33 H 1.09002 * 109.46899 * 120.00182 * 2 1 3 34 34 H 1.08997 * 109.47068 * 59.99956 * 3 2 1 35 35 H 1.09003 * 109.46789 * 299.99796 * 3 2 1 36 36 H 1.09002 * 110.44448 * 82.25918 * 5 4 3 37 37 H 1.09000 * 110.40923 * 319.92183 * 5 4 3 38 38 H 1.08996 * 110.32813 * 264.87747 * 6 5 4 39 39 H 1.09005 * 110.32614 * 142.66584 * 6 5 4 40 40 H 1.09001 * 110.32333 * 241.09870 * 7 6 5 41 41 H 1.08998 * 110.41066 * 118.94062 * 7 6 5 42 42 H 1.09000 * 109.47215 * 59.24691 * 10 8 4 43 43 H 1.09000 * 109.47276 * 299.24422 * 10 8 4 44 44 H 0.97004 * 119.99479 * 4.83281 * 11 10 8 45 45 H 1.07991 * 120.04430 * 0.02562 * 15 14 12 46 46 H 1.08007 * 119.83416 * 180.02562 * 16 15 14 47 47 H 1.08007 * 119.79960 * 179.97438 * 17 16 15 48 48 H 1.07996 * 119.96570 * 180.30015 * 18 17 16 49 49 H 0.96998 * 119.99284 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5091 1.4423 -0.0006 5 6 4.0450 1.0078 1.3163 6 6 5.4857 1.5611 1.3541 7 6 5.4833 2.7523 0.3739 8 6 4.0414 2.8184 -0.1736 9 1 3.4489 3.5304 0.4009 10 6 4.0500 3.2050 -1.6540 11 7 4.5611 4.5703 -1.7992 12 6 4.5682 5.1620 -3.0101 13 8 4.1499 4.5628 -3.9819 14 6 5.0835 6.5367 -3.1564 15 6 5.5644 7.2288 -2.0427 16 6 6.0440 8.5130 -2.1860 17 6 6.0511 9.1225 -3.4304 18 6 5.5847 8.4485 -4.5410 19 6 5.0926 7.1565 -4.4147 20 8 4.6286 6.4952 -5.5028 21 6 4.7862 7.0978 -6.6985 22 1 5.1894 8.0984 -6.7500 23 6 4.4304 6.4328 -7.8625 24 7 4.5838 7.0209 -9.0289 25 14 3.7323 4.7024 -7.7735 26 1 4.8411 3.7171 -7.8443 27 1 2.9980 4.5301 -6.4943 28 1 2.8029 4.4845 -8.9110 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 4.0537 -0.0801 1.3836 37 1 3.4530 1.4331 2.1267 38 1 6.1924 0.8000 1.0233 39 1 5.7353 1.8990 2.3599 40 1 6.1889 2.5759 -0.4380 41 1 5.7324 3.6755 0.8971 42 1 3.0354 3.1530 -2.0490 43 1 4.6904 2.5167 -2.2056 44 1 4.8944 5.0484 -1.0238 45 1 5.5606 6.7584 -1.0707 46 1 6.4160 9.0469 -1.3239 47 1 6.4285 10.1293 -3.5328 48 1 5.5981 8.9285 -5.5083 49 1 4.3346 6.5558 -9.8429 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804778637.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:13 Heat of formation + Delta-G solvation = -59.638441 kcal Electronic energy + Delta-G solvation = -28580.154323 eV Core-core repulsion = 24699.684956 eV Total energy + Delta-G solvation = -3880.469367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.45275 -40.50744 -39.62553 -38.15157 -36.08095 -35.15737 -34.52109 -32.52589 -31.76839 -30.79457 -30.52059 -27.36475 -26.65370 -26.03471 -24.40145 -22.90655 -22.87476 -21.77724 -21.33036 -21.07939 -19.80624 -19.45515 -18.04739 -17.44120 -16.99877 -16.59215 -16.30663 -16.22319 -16.03507 -15.71457 -15.64587 -15.55359 -15.43565 -14.89552 -14.53604 -14.40746 -14.22411 -14.04181 -13.98647 -13.85916 -13.48764 -13.15317 -13.00079 -12.84489 -12.64315 -12.58985 -12.38859 -12.25692 -12.17893 -12.03922 -11.93635 -11.74232 -11.55166 -11.52616 -11.36518 -10.97871 -10.74563 -10.17502 -9.82583 -9.50949 -9.14608 -8.58991 -6.27271 0.05506 0.65275 1.22861 1.28576 1.56706 2.02344 2.08806 2.28475 2.75299 3.01245 3.05924 3.17343 3.56019 3.60911 3.91102 3.95565 4.02585 4.05042 4.13544 4.22357 4.26611 4.28819 4.42924 4.46551 4.48998 4.55305 4.58913 4.67688 4.72888 4.77577 4.81534 4.84351 4.95168 4.98482 5.07081 5.07676 5.14579 5.19905 5.25316 5.28954 5.31746 5.37317 5.44597 5.47970 5.62185 5.69724 5.83684 5.88802 6.05629 6.16050 6.62753 6.78580 7.38571 7.59041 8.51648 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011138 B = 0.003266 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.202272 B = 8572.276588 C =10461.280011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.043 3.957 4 N -0.523 5.523 5 C 0.035 3.965 6 C -0.120 4.120 7 C -0.122 4.122 8 C 0.061 3.939 9 H 0.071 0.929 10 C 0.142 3.858 11 N -0.710 5.710 12 C 0.554 3.446 13 O -0.575 6.575 14 C -0.232 4.232 15 C -0.029 4.029 16 C -0.188 4.188 17 C -0.042 4.042 18 C -0.251 4.251 19 C 0.160 3.840 20 O -0.211 6.211 21 C -0.402 4.402 22 H 0.093 0.907 23 C 0.027 3.973 24 N -0.911 5.911 25 Si 0.954 3.046 26 H -0.277 1.277 27 H -0.269 1.269 28 H -0.264 1.264 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.413 0.587 45 H 0.167 0.833 46 H 0.169 0.831 47 H 0.151 0.849 48 H 0.115 0.885 49 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.048 -8.117 28.647 29.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.151 4.151 3 C -0.085 4.085 4 N -0.248 5.248 5 C -0.092 4.092 6 C -0.158 4.158 7 C -0.160 4.160 8 C -0.047 4.047 9 H 0.089 0.911 10 C 0.018 3.982 11 N -0.366 5.366 12 C 0.344 3.656 13 O -0.455 6.455 14 C -0.237 4.237 15 C -0.047 4.047 16 C -0.206 4.206 17 C -0.060 4.060 18 C -0.270 4.270 19 C 0.107 3.893 20 O -0.115 6.115 21 C -0.478 4.478 22 H 0.110 0.890 23 C -0.173 4.173 24 N -0.551 5.551 25 Si 0.778 3.222 26 H -0.203 1.203 27 H -0.193 1.193 28 H -0.189 1.189 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.113 0.887 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.251 0.749 45 H 0.184 0.816 46 H 0.186 0.814 47 H 0.169 0.831 48 H 0.132 0.868 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.350 -9.169 27.262 28.765 hybrid contribution -0.571 0.267 -0.362 0.727 sum -0.921 -8.902 26.900 28.350 Atomic orbital electron populations 1.21736 0.94960 1.02307 1.01831 1.21420 0.95922 0.95386 1.02370 1.22366 0.87274 0.98169 1.00723 1.65161 1.08383 1.19746 1.31479 1.23189 0.95575 1.01412 0.89056 1.22292 0.96077 0.97326 1.00056 1.22421 0.94110 1.00195 0.99278 1.22709 0.97716 0.91134 0.93180 0.91127 1.21026 0.98226 0.82184 0.96793 1.45487 1.65717 1.16061 1.09313 1.18423 0.77849 0.86301 0.83040 1.90848 1.48373 1.66328 1.39944 1.19271 1.15842 0.95668 0.92919 1.21352 0.92710 0.94408 0.96269 1.21247 1.05711 0.95648 0.98006 1.21456 0.93195 0.99790 0.91588 1.21332 1.09236 0.95201 1.01234 1.19792 0.90702 0.91540 0.87274 1.83776 1.69520 1.44730 1.13467 1.20905 1.44203 1.01357 0.81354 0.88956 1.25010 0.96611 1.02314 0.93369 1.69680 1.47668 1.39778 0.97974 0.85440 0.79211 0.79410 0.78111 1.20283 1.19340 1.18888 0.93449 0.91722 0.92062 0.92548 0.91087 0.93498 0.92412 0.89621 0.92716 0.91169 0.89209 0.91859 0.88718 0.93911 0.93134 0.74855 0.81584 0.81403 0.83103 0.86753 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 71.98 0.71 -1.39 16 2 C -0.11 -1.78 6.01 30.59 0.18 -1.60 16 3 C 0.04 0.76 4.76 86.30 0.41 1.17 16 4 N -0.52 -9.67 5.04 -856.42 -4.32 -13.99 16 5 C 0.03 0.45 5.82 86.43 0.50 0.96 16 6 C -0.12 -1.36 7.00 31.49 0.22 -1.14 16 7 C -0.12 -1.71 6.11 31.49 0.19 -1.51 16 8 C 0.06 1.12 2.38 45.06 0.11 1.23 16 9 H 0.07 1.13 7.99 -2.39 -0.02 1.11 16 10 C 0.14 3.89 5.22 86.38 0.45 4.34 16 11 N -0.71 -19.84 5.35 -466.25 -2.50 -22.33 16 12 C 0.55 22.71 7.76 86.70 0.67 23.38 16 13 O -0.58 -30.66 15.16 16.90 0.26 -30.40 16 14 C -0.23 -9.17 5.89 -19.99 -0.12 -9.29 16 15 C -0.03 -0.76 9.54 22.52 0.21 -0.55 16 16 C -0.19 -4.51 10.02 22.25 0.22 -4.29 16 17 C -0.04 -1.27 10.03 22.30 0.22 -1.05 16 18 C -0.25 -10.71 9.16 22.36 0.20 -10.51 16 19 C 0.16 7.83 6.66 22.91 0.15 7.98 16 20 O -0.21 -12.50 6.67 0.79 0.01 -12.49 16 21 C -0.40 -24.93 9.95 67.93 0.68 -24.25 16 22 H 0.09 5.76 5.44 -2.91 -0.02 5.75 16 23 C 0.03 1.68 5.49 84.85 0.47 2.15 16 24 N -0.91 -56.46 13.96 21.62 0.30 -56.16 16 25 Si 0.95 52.07 28.62 68.60 1.96 54.04 16 26 H -0.28 -14.98 7.11 99.48 0.71 -14.27 16 27 H -0.27 -15.85 7.11 99.48 0.71 -15.14 16 28 H -0.26 -13.15 7.11 99.48 0.71 -12.44 16 29 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.07 0.95 7.35 -2.39 -0.02 0.93 16 34 H 0.05 0.72 7.84 -2.39 -0.02 0.70 16 35 H 0.06 1.25 7.20 -2.39 -0.02 1.24 16 36 H 0.09 1.06 7.81 -2.39 -0.02 1.04 16 37 H 0.05 0.60 7.80 -2.39 -0.02 0.58 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.06 1.11 7.81 -2.39 -0.02 1.09 16 41 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.04 1.38 7.28 -2.39 -0.02 1.36 16 43 H 0.05 1.61 8.08 -2.39 -0.02 1.59 16 44 H 0.41 7.78 6.24 -92.70 -0.58 7.20 16 45 H 0.17 2.60 6.40 -2.92 -0.02 2.58 16 46 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 48 H 0.11 5.36 5.64 -2.91 -0.02 5.34 16 49 H 0.29 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -81.63 392.15 1.59 -80.05 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.37 Total: 15.65 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 5.50 Total: -14.36 kcal Atomic # 7 Polarization: -85.96 SS G_CDS: -6.51 Total: -92.48 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: 0.26 Total: -42.89 kcal Atomic # 14 Polarization: 52.07 SS G_CDS: 1.96 Total: 54.04 kcal Total: -81.63 1.59 -80.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804778637.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.411 kcal (2) G-P(sol) polarization free energy of solvation -81.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds