Wall clock time and date at job start Tue Mar 31 2020 16:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 120.00007 * 2 1 4 4 C 1.52999 * 109.47042 * 269.99999 * 3 2 1 5 5 C 1.52997 * 109.47243 * 60.00285 * 4 3 2 6 6 O 1.42903 * 109.47129 * 299.99687 * 4 3 2 7 7 C 1.50702 * 109.46975 * 180.02562 * 4 3 2 8 8 C 1.38241 * 119.99633 * 329.72227 * 7 4 3 9 9 C 1.38232 * 119.99419 * 179.76754 * 8 7 4 10 10 C 1.38235 * 120.00653 * 0.51360 * 9 8 7 11 11 C 1.38243 * 119.99306 * 359.74110 * 10 9 8 12 12 C 1.38232 * 120.00428 * 0.02562 * 11 10 9 13 13 C 1.34780 * 119.99816 * 180.02562 * 2 1 3 14 14 O 1.21587 * 119.99923 * 184.99643 * 13 2 1 15 15 N 1.34775 * 119.99910 * 4.99275 * 13 2 1 16 16 C 1.46503 * 119.99767 * 184.91553 * 15 13 2 17 17 C 1.52995 * 109.47192 * 184.93649 * 16 15 13 18 18 C 1.50704 * 115.54973 * 53.88012 * 17 16 15 19 19 H 1.08000 * 119.99868 * 215.59116 * 18 17 16 20 20 C 1.37876 * 119.99920 * 35.30625 * 18 17 16 21 21 N 1.31515 * 120.00310 * 6.62266 * 20 18 17 22 22 Si 1.86806 * 120.00199 * 186.62120 * 20 18 17 23 23 H 1.48497 * 109.47197 * 90.00365 * 22 20 18 24 24 H 1.48500 * 109.47327 * 210.00491 * 22 20 18 25 25 H 1.48499 * 109.46767 * 330.00480 * 22 20 18 26 26 C 1.53004 * 117.50135 * 199.54510 * 17 16 15 27 27 C 1.52994 * 117.50216 * 268.20974 * 17 16 15 28 28 H 1.08997 * 109.46848 * 263.70618 * 1 2 3 29 29 H 1.09001 * 109.46829 * 23.70722 * 1 2 3 30 30 H 1.09001 * 109.47073 * 143.70509 * 1 2 3 31 31 H 1.08994 * 109.47162 * 30.00051 * 3 2 1 32 32 H 1.09004 * 109.46936 * 150.00356 * 3 2 1 33 33 H 1.08994 * 109.47233 * 59.99782 * 5 4 3 34 34 H 1.08996 * 109.47022 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.46694 * 299.99749 * 5 4 3 36 36 H 0.96698 * 114.00016 * 300.00255 * 6 4 3 37 37 H 1.07991 * 120.00034 * 0.02562 * 8 7 4 38 38 H 1.08003 * 119.99738 * 180.22740 * 9 8 7 39 39 H 1.07996 * 120.00745 * 179.72740 * 10 9 8 40 40 H 1.08003 * 119.99487 * 179.97438 * 11 10 9 41 41 H 1.07997 * 120.00296 * 179.97438 * 12 11 10 42 42 H 0.96998 * 120.00244 * 4.92239 * 15 13 2 43 43 H 1.09002 * 109.46860 * 64.93614 * 16 15 13 44 44 H 1.09000 * 109.47026 * 304.93963 * 16 15 13 45 45 H 0.96997 * 120.00890 * 184.98002 * 21 20 18 46 46 H 1.08995 * 117.49874 * 215.00595 * 26 17 16 47 47 H 1.09000 * 117.49657 * 0.02710 * 26 17 16 48 48 H 1.09002 * 117.49784 * 359.97438 * 27 17 16 49 49 H 1.08997 * 117.50106 * 144.97345 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 1.1157 1.8934 -2.1637 6 8 3.2249 0.7145 -2.1161 7 6 3.2066 3.0152 -1.4425 8 6 3.0299 3.9155 -0.4084 9 6 3.7252 5.1102 -0.4060 10 6 4.5892 5.4094 -1.4428 11 6 4.7618 4.5113 -2.4795 12 6 4.0702 3.3144 -2.4796 13 6 2.1389 -1.1673 -0.0005 14 8 3.3513 -1.1693 0.0912 15 7 1.4688 -2.3321 -0.1026 16 6 2.1891 -3.6033 0.0049 17 6 1.2254 -4.7601 -0.2670 18 6 0.4639 -4.6803 -1.5650 19 1 -0.5549 -5.0352 -1.6161 20 6 1.0657 -4.1487 -2.6858 21 7 2.3419 -3.8319 -2.6592 22 14 0.0686 -3.8785 -4.2422 23 1 -0.5247 -2.5174 -4.2198 24 1 0.9538 -4.0132 -5.4269 25 1 -1.0159 -4.8901 -4.3170 26 6 1.6312 -6.1493 0.2296 27 6 0.5103 -5.3812 0.9345 28 1 -0.3633 -0.1127 1.0215 29 1 -0.3633 0.9410 -0.4132 30 1 -0.3633 -0.8283 -0.6083 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 0.5267 2.6530 -1.6499 34 1 1.2974 2.2076 -3.1915 35 1 0.5707 0.9494 -2.1637 36 1 4.0873 0.5460 -1.7126 37 1 2.3519 3.6837 0.3995 38 1 3.5900 5.8121 0.4037 39 1 5.1291 6.3447 -1.4432 40 1 5.4365 4.7452 -3.2898 41 1 4.2047 2.6130 -3.2897 42 1 0.5097 -2.3289 -0.2474 43 1 2.6023 -3.7030 1.0086 44 1 2.9983 -3.6253 -0.7250 45 1 2.7484 -3.3917 -3.4220 46 1 1.3473 -7.0053 -0.3825 47 1 2.5845 -6.2390 0.7504 48 1 0.7266 -4.9659 1.9188 49 1 -0.5111 -5.7316 0.7863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824535792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:01 Heat of formation + Delta-G solvation = -14.417878 kcal Electronic energy + Delta-G solvation = -29918.820706 eV Core-core repulsion = 26040.312250 eV Total energy + Delta-G solvation = -3878.508456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.22761 -39.08329 -37.21636 -36.47677 -34.66826 -32.97561 -32.22516 -32.01552 -30.95584 -29.33212 -27.80933 -26.28638 -25.45103 -24.40469 -23.14750 -22.36597 -21.19445 -20.27104 -19.19994 -18.99805 -17.69436 -17.39139 -16.46243 -16.11104 -15.68750 -15.39825 -14.94692 -14.71090 -14.51809 -14.27558 -13.91282 -13.70253 -13.57413 -13.23070 -13.11926 -12.89172 -12.66423 -12.58916 -12.35759 -12.17512 -11.81602 -11.68408 -11.58329 -11.48565 -11.32585 -11.11792 -10.97338 -10.73882 -10.68328 -10.47131 -10.20463 -9.98658 -9.59617 -9.16883 -9.03084 -9.01987 -8.87700 -8.75887 -8.21566 -8.11392 -7.60390 -5.95173 -4.09986 1.22378 1.30266 3.25999 3.29099 3.36114 3.37429 3.67446 4.11009 4.37424 4.42296 4.60186 4.77921 4.82749 4.88446 4.95735 5.05112 5.08864 5.20817 5.33559 5.37891 5.46488 5.52573 5.55759 5.69262 5.81485 5.86745 5.89447 5.90812 5.97783 6.02343 6.07996 6.27329 6.35485 6.36339 6.40788 6.52431 6.61679 6.65430 6.78023 6.85302 6.89827 6.96648 7.13911 7.31397 7.58395 7.72224 7.82594 8.01797 8.04736 8.39243 8.84239 8.99840 9.52684 9.56358 10.99244 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.003504 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.235981 B = 7989.275910 C = 8686.683609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.634 5.634 3 C 0.116 3.884 4 C 0.154 3.846 5 C -0.135 4.135 6 O -0.535 6.535 7 C -0.106 4.106 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.125 4.125 11 C -0.122 4.122 12 C -0.101 4.101 13 C 0.711 3.289 14 O -0.603 6.603 15 N -0.704 5.704 16 C 0.179 3.821 17 C 0.041 3.959 18 C -0.503 4.503 19 H 0.059 0.941 20 C 0.080 3.920 21 N -0.856 5.856 22 Si 0.887 3.113 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.197 4.197 27 C -0.213 4.213 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.381 0.619 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.393 0.607 43 H 0.015 0.985 44 H 0.113 0.887 45 H 0.264 0.736 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.781 17.397 4.016 17.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.372 5.372 3 C -0.009 4.009 4 C 0.111 3.889 5 C -0.192 4.192 6 O -0.341 6.341 7 C -0.107 4.107 8 C -0.134 4.134 9 C -0.140 4.140 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.119 4.119 13 C 0.412 3.588 14 O -0.483 6.483 15 N -0.356 5.356 16 C 0.056 3.944 17 C 0.040 3.960 18 C -0.540 4.540 19 H 0.077 0.923 20 C -0.126 4.126 21 N -0.491 5.491 22 Si 0.715 3.285 23 H -0.206 1.206 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.236 4.236 27 C -0.251 4.251 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.230 0.770 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.228 0.772 43 H 0.033 0.967 44 H 0.130 0.870 45 H 0.074 0.926 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.247 17.325 3.570 17.691 hybrid contribution -0.570 0.238 -0.586 0.852 sum -0.817 17.564 2.984 17.834 Atomic orbital electron populations 1.21766 0.80677 1.02901 1.01190 1.46755 1.05575 1.04684 1.80195 1.21897 0.98405 0.84984 0.95638 1.20435 0.91307 0.84119 0.93002 1.21796 0.94477 1.02438 1.00451 1.86591 1.33653 1.58203 1.55679 1.20640 0.98011 0.96966 0.95117 1.21104 1.00029 0.94073 0.98154 1.21112 0.97244 0.97046 0.98635 1.21150 0.98941 0.99459 0.94713 1.21171 0.99772 0.94341 0.98686 1.21082 0.95739 0.96757 0.98305 1.15766 0.85130 0.80185 0.77713 1.90777 1.12058 1.86197 1.59229 1.44959 1.11290 1.04302 1.75011 1.20864 0.96033 0.79659 0.97869 1.19201 0.95577 0.89336 0.91872 1.20442 0.98497 1.42893 0.92170 0.92326 1.24913 0.94449 0.95084 0.98147 1.69830 1.09737 1.38555 1.30956 0.86671 0.80051 0.78450 0.83329 1.20646 1.21258 1.20042 1.22916 0.96779 0.99054 1.04845 1.22949 0.96432 1.08624 0.97078 0.93244 0.91237 0.91194 0.90541 0.89550 0.91661 0.92160 0.90760 0.77014 0.85866 0.86182 0.86354 0.86174 0.85317 0.77210 0.96727 0.86965 0.92571 0.90277 0.91561 0.91475 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.03 8.91 59.85 0.53 1.56 16 2 N -0.63 -10.33 2.55 -187.35 -0.48 -10.80 16 3 C 0.12 1.60 4.01 -4.04 -0.02 1.59 16 4 C 0.15 2.14 0.99 -91.77 -0.09 2.05 16 5 C -0.13 -1.77 7.60 37.16 0.28 -1.48 16 6 O -0.54 -9.36 10.88 -37.11 -0.40 -9.76 16 7 C -0.11 -1.30 4.80 -104.62 -0.50 -1.81 16 8 C -0.12 -1.22 9.14 -39.58 -0.36 -1.58 16 9 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 10 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 11 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16 12 C -0.10 -1.22 9.35 -39.58 -0.37 -1.59 16 13 C 0.71 14.97 7.70 -86.92 -0.67 14.30 16 14 O -0.60 -14.46 15.02 3.41 0.05 -14.41 16 15 N -0.70 -15.32 5.12 -65.22 -0.33 -15.65 16 16 C 0.18 4.32 4.71 -4.04 -0.02 4.30 16 17 C 0.04 0.98 1.98 -155.66 -0.31 0.67 16 18 C -0.50 -12.96 8.42 -34.44 -0.29 -13.25 16 19 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 20 C 0.08 2.08 5.20 -17.82 -0.09 1.99 16 21 N -0.86 -23.52 10.60 55.43 0.59 -22.93 16 22 Si 0.89 20.64 29.55 -169.99 -5.02 15.62 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C -0.20 -4.40 9.96 -26.69 -0.27 -4.66 16 27 C -0.21 -4.48 9.92 -26.69 -0.26 -4.74 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.73 6.34 -51.93 -0.33 0.40 16 30 H 0.07 1.01 6.44 -51.93 -0.33 0.68 16 31 H 0.08 0.82 6.44 -51.93 -0.33 0.48 16 32 H 0.09 1.34 7.36 -51.93 -0.38 0.95 16 33 H 0.06 0.68 8.07 -51.93 -0.42 0.26 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.10 6.09 -51.93 -0.32 0.78 16 36 H 0.38 6.52 8.61 45.56 0.39 6.92 16 37 H 0.12 1.09 6.17 -52.49 -0.32 0.77 16 38 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.13 1.62 7.48 -52.49 -0.39 1.23 16 42 H 0.39 8.14 5.86 -40.82 -0.24 7.90 16 43 H 0.01 0.35 8.09 -51.93 -0.42 -0.07 16 44 H 0.11 3.12 5.94 -51.93 -0.31 2.81 16 45 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 46 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 47 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 48 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 49 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -30.42 389.91 -10.11 -40.53 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -6.76 Total: 19.02 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -3.63 Total: -7.49 kcal Atomic # 7 Polarization: -49.16 SS G_CDS: -0.22 Total: -49.38 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.35 Total: -24.17 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.42 -10.11 -40.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824535792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.108 kcal (2) G-P(sol) polarization free energy of solvation -30.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds