Wall clock time and date at job start Tue Mar 31 2020 16:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 120.00007 * 2 1 4 4 C 1.52999 * 109.47042 * 269.99999 * 3 2 1 5 5 C 1.52997 * 109.47243 * 60.00285 * 4 3 2 6 6 O 1.42903 * 109.47129 * 299.99687 * 4 3 2 7 7 C 1.50702 * 109.46975 * 180.02562 * 4 3 2 8 8 C 1.38241 * 119.99633 * 329.72227 * 7 4 3 9 9 C 1.38232 * 119.99419 * 179.76754 * 8 7 4 10 10 C 1.38235 * 120.00653 * 0.51360 * 9 8 7 11 11 C 1.38243 * 119.99306 * 359.74110 * 10 9 8 12 12 C 1.38232 * 120.00428 * 0.02562 * 11 10 9 13 13 C 1.34780 * 119.99816 * 180.02562 * 2 1 3 14 14 O 1.21587 * 119.99923 * 184.99643 * 13 2 1 15 15 N 1.34775 * 119.99910 * 4.99275 * 13 2 1 16 16 C 1.46503 * 119.99767 * 184.91553 * 15 13 2 17 17 C 1.52995 * 109.47192 * 184.93649 * 16 15 13 18 18 C 1.50704 * 115.54973 * 53.88012 * 17 16 15 19 19 H 1.08000 * 119.99868 * 215.59116 * 18 17 16 20 20 C 1.37876 * 119.99920 * 35.30625 * 18 17 16 21 21 N 1.31515 * 120.00310 * 6.62266 * 20 18 17 22 22 Si 1.86806 * 120.00199 * 186.62120 * 20 18 17 23 23 H 1.48497 * 109.47197 * 90.00365 * 22 20 18 24 24 H 1.48500 * 109.47327 * 210.00491 * 22 20 18 25 25 H 1.48499 * 109.46767 * 330.00480 * 22 20 18 26 26 C 1.53004 * 117.50135 * 199.54510 * 17 16 15 27 27 C 1.52994 * 117.50216 * 268.20974 * 17 16 15 28 28 H 1.08997 * 109.46848 * 263.70618 * 1 2 3 29 29 H 1.09001 * 109.46829 * 23.70722 * 1 2 3 30 30 H 1.09001 * 109.47073 * 143.70509 * 1 2 3 31 31 H 1.08994 * 109.47162 * 30.00051 * 3 2 1 32 32 H 1.09004 * 109.46936 * 150.00356 * 3 2 1 33 33 H 1.08994 * 109.47233 * 59.99782 * 5 4 3 34 34 H 1.08996 * 109.47022 * 180.02562 * 5 4 3 35 35 H 1.09007 * 109.46694 * 299.99749 * 5 4 3 36 36 H 0.96698 * 114.00016 * 300.00255 * 6 4 3 37 37 H 1.07991 * 120.00034 * 0.02562 * 8 7 4 38 38 H 1.08003 * 119.99738 * 180.22740 * 9 8 7 39 39 H 1.07996 * 120.00745 * 179.72740 * 10 9 8 40 40 H 1.08003 * 119.99487 * 179.97438 * 11 10 9 41 41 H 1.07997 * 120.00296 * 179.97438 * 12 11 10 42 42 H 0.96998 * 120.00244 * 4.92239 * 15 13 2 43 43 H 1.09002 * 109.46860 * 64.93614 * 16 15 13 44 44 H 1.09000 * 109.47026 * 304.93963 * 16 15 13 45 45 H 0.96997 * 120.00890 * 184.98002 * 21 20 18 46 46 H 1.08995 * 117.49874 * 215.00595 * 26 17 16 47 47 H 1.09000 * 117.49657 * 0.02710 * 26 17 16 48 48 H 1.09002 * 117.49784 * 359.97438 * 27 17 16 49 49 H 1.08997 * 117.50106 * 144.97345 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4425 5 6 1.1157 1.8934 -2.1637 6 8 3.2249 0.7145 -2.1161 7 6 3.2066 3.0152 -1.4425 8 6 3.0299 3.9155 -0.4084 9 6 3.7252 5.1102 -0.4060 10 6 4.5892 5.4094 -1.4428 11 6 4.7618 4.5113 -2.4795 12 6 4.0702 3.3144 -2.4796 13 6 2.1389 -1.1673 -0.0005 14 8 3.3513 -1.1693 0.0912 15 7 1.4688 -2.3321 -0.1026 16 6 2.1891 -3.6033 0.0049 17 6 1.2254 -4.7601 -0.2670 18 6 0.4639 -4.6803 -1.5650 19 1 -0.5549 -5.0352 -1.6161 20 6 1.0657 -4.1487 -2.6858 21 7 2.3419 -3.8319 -2.6592 22 14 0.0686 -3.8785 -4.2422 23 1 -0.5247 -2.5174 -4.2198 24 1 0.9538 -4.0132 -5.4269 25 1 -1.0159 -4.8901 -4.3170 26 6 1.6312 -6.1493 0.2296 27 6 0.5103 -5.3812 0.9345 28 1 -0.3633 -0.1127 1.0215 29 1 -0.3633 0.9410 -0.4132 30 1 -0.3633 -0.8283 -0.6083 31 1 1.6085 2.0283 0.5138 32 1 3.1500 1.1383 0.5138 33 1 0.5267 2.6530 -1.6499 34 1 1.2974 2.2076 -3.1915 35 1 0.5707 0.9494 -2.1637 36 1 4.0873 0.5460 -1.7126 37 1 2.3519 3.6837 0.3995 38 1 3.5900 5.8121 0.4037 39 1 5.1291 6.3447 -1.4432 40 1 5.4365 4.7452 -3.2898 41 1 4.2047 2.6130 -3.2897 42 1 0.5097 -2.3289 -0.2474 43 1 2.6023 -3.7030 1.0086 44 1 2.9983 -3.6253 -0.7250 45 1 2.7484 -3.3917 -3.4220 46 1 1.3473 -7.0053 -0.3825 47 1 2.5845 -6.2390 0.7504 48 1 0.7266 -4.9659 1.9188 49 1 -0.5111 -5.7316 0.7863 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824535792.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:00 Heat of formation + Delta-G solvation = -32.595778 kcal Electronic energy + Delta-G solvation = -29919.608959 eV Core-core repulsion = 26040.312250 eV Total energy + Delta-G solvation = -3879.296709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.41048 -40.34996 -38.67384 -37.95455 -36.08213 -34.65618 -34.08038 -33.26494 -31.76059 -30.29117 -28.94562 -27.94508 -27.31748 -25.80912 -24.08736 -23.25279 -22.92605 -21.36097 -21.07395 -20.49178 -19.15127 -18.51534 -17.91097 -17.56963 -16.92290 -16.70445 -16.60066 -16.03049 -15.71272 -15.54820 -15.40524 -14.98689 -14.73739 -14.68978 -14.29258 -14.17220 -14.04075 -13.75785 -13.50663 -13.41835 -13.33008 -13.20344 -12.86432 -12.73035 -12.70163 -12.59824 -12.47834 -12.29444 -12.04568 -12.01589 -11.72171 -11.42648 -11.17447 -11.00554 -10.85695 -10.60074 -10.07679 -9.81888 -9.79195 -9.64721 -9.15671 -7.94961 -6.15244 0.41056 0.50255 1.39453 1.43816 1.51497 1.91232 2.42688 2.51550 2.86855 3.03225 3.27131 3.42645 3.67020 3.71582 3.86460 3.97343 4.13797 4.18026 4.28029 4.30512 4.32513 4.47406 4.57104 4.60065 4.65069 4.69000 4.79120 4.80335 4.84535 4.86085 4.88790 4.89792 4.98651 5.07608 5.15107 5.16638 5.22426 5.31979 5.55474 5.56132 5.62332 5.63414 5.63845 5.74494 5.99701 6.03483 6.11268 6.19149 6.41699 6.74160 6.85384 7.36139 7.49439 7.92984 8.95276 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016387 B = 0.003504 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.235981 B = 7989.275910 C = 8686.683609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.627 5.627 3 C 0.116 3.884 4 C 0.152 3.848 5 C -0.132 4.132 6 O -0.563 6.563 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.122 4.122 10 C -0.125 4.125 11 C -0.129 4.129 12 C -0.122 4.122 13 C 0.703 3.297 14 O -0.640 6.640 15 N -0.704 5.704 16 C 0.194 3.806 17 C 0.011 3.989 18 C -0.506 4.506 19 H 0.058 0.942 20 C 0.042 3.958 21 N -0.881 5.881 22 Si 0.939 3.061 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.267 1.267 26 C -0.201 4.201 27 C -0.183 4.183 28 H 0.072 0.928 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.119 0.881 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.376 0.624 37 H 0.143 0.857 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.110 0.890 42 H 0.397 0.603 43 H 0.013 0.987 44 H 0.071 0.929 45 H 0.253 0.747 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.654 19.694 5.465 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.364 5.364 3 C -0.008 4.008 4 C 0.110 3.890 5 C -0.189 4.189 6 O -0.369 6.369 7 C -0.119 4.119 8 C -0.137 4.137 9 C -0.139 4.139 10 C -0.143 4.143 11 C -0.147 4.147 12 C -0.141 4.141 13 C 0.404 3.596 14 O -0.523 6.523 15 N -0.356 5.356 16 C 0.069 3.931 17 C 0.011 3.989 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.161 4.161 21 N -0.517 5.517 22 Si 0.766 3.234 23 H -0.201 1.201 24 H -0.224 1.224 25 H -0.191 1.191 26 C -0.239 4.239 27 C -0.220 4.220 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.071 0.929 31 H 0.137 0.863 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.224 0.776 37 H 0.161 0.839 38 H 0.167 0.833 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.128 0.872 42 H 0.233 0.767 43 H 0.031 0.969 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.180 19.651 5.025 20.400 hybrid contribution 0.027 -0.432 -1.008 1.097 sum -2.153 19.219 4.016 19.752 Atomic orbital electron populations 1.22001 0.78390 1.03996 1.02549 1.46781 1.07025 1.03893 1.78723 1.22078 0.98140 0.84658 0.95875 1.20589 0.91441 0.84288 0.92709 1.21822 0.94218 1.02400 1.00418 1.86566 1.33693 1.59839 1.56784 1.20479 0.98666 0.96590 0.96199 1.21329 1.00467 0.94048 0.97839 1.21496 0.96272 0.96986 0.99193 1.21519 0.98661 1.00059 0.94020 1.21391 0.99722 0.93866 0.99717 1.21074 0.97083 0.97526 0.98384 1.16013 0.84844 0.81201 0.77511 1.90744 1.13854 1.86953 1.60750 1.44812 1.11319 1.04023 1.75456 1.20459 0.95304 0.81077 0.96260 1.19231 0.96912 0.90016 0.92765 1.20654 0.98396 1.42270 0.92999 0.92430 1.25475 0.94988 0.95215 1.00427 1.70031 1.11047 1.39700 1.30946 0.85855 0.78838 0.78635 0.80122 1.20135 1.22372 1.19102 1.22931 0.97977 0.97960 1.05062 1.22937 0.96378 1.06118 0.96564 0.91001 0.88085 0.92862 0.86323 0.91487 0.88221 0.93155 0.92608 0.77646 0.83927 0.83298 0.83719 0.84785 0.87192 0.76653 0.96931 0.91068 0.93708 0.90665 0.90798 0.89647 0.89691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.76 8.91 127.77 1.14 2.89 16 2 N -0.63 -19.98 2.55 -864.90 -2.21 -22.19 16 3 C 0.12 3.09 4.01 86.38 0.35 3.43 16 4 C 0.15 4.19 0.99 -11.54 -0.01 4.18 16 5 C -0.13 -3.31 7.60 71.98 0.55 -2.77 16 6 O -0.56 -20.90 10.88 -147.19 -1.60 -22.50 16 7 C -0.12 -2.82 4.80 -19.86 -0.10 -2.92 16 8 C -0.12 -2.20 9.14 22.27 0.20 -2.00 16 9 C -0.12 -1.92 10.05 22.27 0.22 -1.70 16 10 C -0.12 -2.05 10.05 22.27 0.22 -1.82 16 11 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 12 C -0.12 -3.03 9.35 22.27 0.21 -2.82 16 13 C 0.70 30.20 7.70 179.05 1.38 31.58 16 14 O -0.64 -32.04 15.02 -2.20 -0.03 -32.08 16 15 N -0.70 -31.11 5.12 -478.53 -2.45 -33.56 16 16 C 0.19 9.56 4.71 86.38 0.41 9.97 16 17 C 0.01 0.55 1.98 -52.93 -0.10 0.44 16 18 C -0.51 -26.05 8.42 25.60 0.22 -25.83 16 19 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 20 C 0.04 2.20 5.20 84.65 0.44 2.64 16 21 N -0.88 -50.21 10.60 21.45 0.23 -49.98 16 22 Si 0.94 42.86 29.55 68.60 2.03 44.89 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C -0.20 -8.81 9.96 30.62 0.30 -8.51 16 27 C -0.18 -7.32 9.92 30.62 0.30 -7.01 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.10 1.78 6.34 -2.39 -0.02 1.76 16 30 H 0.05 1.48 6.44 -2.39 -0.02 1.46 16 31 H 0.12 2.12 6.44 -2.39 -0.02 2.10 16 32 H 0.07 2.07 7.36 -2.39 -0.02 2.05 16 33 H 0.10 1.77 8.07 -2.39 -0.02 1.75 16 34 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.05 1.60 6.09 -2.38 -0.01 1.59 16 36 H 0.38 14.13 8.61 -74.06 -0.64 13.49 16 37 H 0.14 1.97 6.17 -2.91 -0.02 1.96 16 38 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 39 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 40 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.11 3.03 7.48 -2.91 -0.02 3.00 16 42 H 0.40 16.50 5.86 -92.71 -0.54 15.96 16 43 H 0.01 0.61 8.09 -2.39 -0.02 0.59 16 44 H 0.07 4.15 5.94 -2.39 -0.01 4.13 16 45 H 0.25 14.53 8.32 -92.71 -0.77 13.76 16 46 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 47 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 48 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 49 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -68.44 389.91 1.70 -66.74 By element: Atomic # 1 Polarization: 51.47 SS G_CDS: -0.21 Total: 51.26 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: 5.95 Total: -2.58 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -4.43 Total: -105.72 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -1.63 Total: -54.58 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -68.44 1.70 -66.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824535792.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.147 kcal (2) G-P(sol) polarization free energy of solvation -68.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds