Wall clock time and date at job start Tue Mar 31 2020 16:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46491 * 119.99870 * 2 1 4 4 C 1.53008 * 109.47214 * 270.00038 * 3 2 1 5 5 C 1.53002 * 109.46731 * 305.00333 * 4 3 2 6 6 O 1.42899 * 109.47058 * 65.00126 * 4 3 2 7 7 C 1.50696 * 109.47212 * 185.00265 * 4 3 2 8 8 C 1.38241 * 119.99874 * 29.72799 * 7 4 3 9 9 C 1.38233 * 119.99461 * 179.78856 * 8 7 4 10 10 C 1.38232 * 120.00430 * 0.43898 * 9 8 7 11 11 C 1.38233 * 119.99875 * 359.81507 * 10 9 8 12 12 C 1.38231 * 120.00064 * 359.97438 * 11 10 9 13 13 C 1.34782 * 119.99644 * 180.02562 * 2 1 3 14 14 O 1.21586 * 119.99504 * 185.16420 * 13 2 1 15 15 N 1.34776 * 120.00121 * 5.16443 * 13 2 1 16 16 C 1.46500 * 119.99964 * 185.03140 * 15 13 2 17 17 C 1.52995 * 109.47169 * 184.99218 * 16 15 13 18 18 C 1.50700 * 115.55116 * 54.04595 * 17 16 15 19 19 H 1.08001 * 120.00018 * 215.59208 * 18 17 16 20 20 C 1.37880 * 120.00007 * 35.31504 * 18 17 16 21 21 N 1.31520 * 119.99665 * 355.91481 * 20 18 17 22 22 Si 1.86792 * 120.00152 * 175.91193 * 20 18 17 23 23 H 1.48501 * 109.47030 * 59.99958 * 22 20 18 24 24 H 1.48497 * 109.47194 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47356 * 300.00048 * 22 20 18 26 26 C 1.52999 * 117.49856 * 199.71829 * 17 16 15 27 27 C 1.53007 * 117.49767 * 268.37534 * 17 16 15 28 28 H 1.08998 * 109.47161 * 274.12175 * 1 2 3 29 29 H 1.08993 * 109.47400 * 34.12047 * 1 2 3 30 30 H 1.09003 * 109.47325 * 154.12361 * 1 2 3 31 31 H 1.08994 * 109.47855 * 30.00271 * 3 2 1 32 32 H 1.09001 * 109.46999 * 150.00337 * 3 2 1 33 33 H 1.09002 * 109.47161 * 60.00279 * 5 4 3 34 34 H 1.09002 * 109.46613 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47247 * 299.99545 * 5 4 3 36 36 H 0.96701 * 113.99602 * 60.00214 * 6 4 3 37 37 H 1.07993 * 120.00178 * 359.97438 * 8 7 4 38 38 H 1.08005 * 119.99739 * 180.27614 * 9 8 7 39 39 H 1.08006 * 120.00156 * 179.83613 * 10 9 8 40 40 H 1.08005 * 119.99996 * 179.97438 * 11 10 9 41 41 H 1.08007 * 120.00398 * 180.02562 * 12 11 10 42 42 H 0.97000 * 120.00083 * 5.03275 * 15 13 2 43 43 H 1.08999 * 109.46889 * 64.98852 * 16 15 13 44 44 H 1.09001 * 109.47156 * 304.99050 * 16 15 13 45 45 H 0.96997 * 119.99178 * 184.99796 * 21 20 18 46 46 H 1.09002 * 117.49879 * 215.00186 * 26 17 16 47 47 H 1.09006 * 117.49901 * 0.02562 * 26 17 16 48 48 H 1.08997 * 117.49678 * 359.97438 * 27 17 16 49 49 H 1.09002 * 117.49675 * 144.97418 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.1707 0.5912 -2.1992 6 8 1.2059 1.9935 -2.0814 7 6 3.3106 2.9491 -1.4444 8 6 4.2176 3.1631 -0.4232 9 6 5.0078 4.2972 -0.4273 10 6 4.8848 5.2218 -1.4475 11 6 3.9742 5.0104 -2.4658 12 6 3.1870 3.8742 -2.4641 13 6 2.1388 -1.1673 -0.0005 14 8 3.3510 -1.1694 0.0943 15 7 1.4690 -2.3320 -0.1061 16 6 2.1886 -3.6034 0.0039 17 6 1.2262 -4.7598 -0.2741 18 6 0.4743 -4.6806 -1.5777 19 1 -0.5443 -5.0349 -1.6360 20 6 1.0848 -4.1505 -2.6946 21 7 2.2937 -3.6408 -2.6036 22 14 0.1949 -4.1565 -4.3369 23 1 -1.0683 -3.3848 -4.2182 24 1 1.0602 -3.5346 -5.3711 25 1 -0.1146 -5.5555 -4.7272 26 6 1.6273 -6.1487 0.2268 27 6 0.5018 -5.3794 0.9228 28 1 -0.3633 0.0739 1.0250 29 1 -0.3634 0.8507 -0.5764 30 1 -0.3634 -0.9246 -0.4485 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 2.5499 -0.3048 -2.1979 34 1 3.3519 0.9057 -3.2270 35 1 4.1215 0.3752 -1.7119 36 1 0.6955 2.6950 -1.6542 37 1 4.3108 2.4428 0.3760 38 1 5.7196 4.4623 0.3681 39 1 5.5005 6.1093 -1.4492 40 1 3.8778 5.7330 -3.2627 41 1 2.4757 3.7087 -3.2599 42 1 0.5105 -2.3285 -0.2550 43 1 2.5966 -3.7040 1.0096 44 1 3.0015 -3.6248 -0.7219 45 1 2.6944 -3.2031 -3.3708 46 1 1.3474 -7.0052 -0.3866 47 1 2.5767 -6.2385 0.7548 48 1 0.7112 -4.9634 1.9082 49 1 -0.5188 -5.7293 0.7673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824535794.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:04 Heat of formation + Delta-G solvation = -11.027067 kcal Electronic energy + Delta-G solvation = -29963.476291 eV Core-core repulsion = 26085.114872 eV Total energy + Delta-G solvation = -3878.361420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.26549 -39.08447 -37.27122 -36.55981 -34.49641 -33.14324 -32.30840 -32.00374 -30.93600 -29.28385 -27.27571 -26.35341 -25.53710 -24.54970 -23.01560 -22.36643 -21.22007 -20.21703 -19.21799 -19.03234 -17.85106 -17.20958 -16.51722 -16.13529 -15.66313 -15.41951 -14.97174 -14.75095 -14.49462 -14.31110 -13.92144 -13.71285 -13.48109 -13.14317 -13.07020 -12.88626 -12.65342 -12.49543 -12.09649 -11.90749 -11.81483 -11.67370 -11.57147 -11.42122 -11.24360 -11.04136 -11.01508 -10.75933 -10.67454 -10.49155 -10.21117 -10.12835 -9.65881 -9.18080 -8.99115 -8.94404 -8.84092 -8.79529 -8.24675 -8.14195 -7.57329 -5.92325 -4.13846 1.25052 1.33028 3.26082 3.32543 3.34647 3.34954 3.69885 4.08836 4.33576 4.34337 4.60954 4.78662 4.84666 4.92451 5.01462 5.07257 5.12532 5.21850 5.41278 5.49322 5.51678 5.54091 5.72603 5.79343 5.87497 5.91341 5.99811 6.01867 6.09296 6.22821 6.32800 6.34717 6.41722 6.43286 6.52953 6.59036 6.64290 6.77386 6.81931 6.89264 6.92866 6.96443 7.14035 7.28703 7.58475 7.68451 7.74677 7.85374 8.06141 8.36713 8.81600 9.01091 9.49544 9.57362 10.95215 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.003518 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.543703 B = 7956.486921 C = 8733.775804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.635 5.635 3 C 0.116 3.884 4 C 0.157 3.843 5 C -0.123 4.123 6 O -0.546 6.546 7 C -0.106 4.106 8 C -0.112 4.112 9 C -0.121 4.121 10 C -0.124 4.124 11 C -0.124 4.124 12 C -0.104 4.104 13 C 0.705 3.295 14 O -0.602 6.602 15 N -0.699 5.699 16 C 0.183 3.817 17 C 0.039 3.961 18 C -0.501 4.501 19 H 0.058 0.942 20 C 0.078 3.922 21 N -0.859 5.859 22 Si 0.891 3.109 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.199 4.199 27 C -0.213 4.213 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.367 0.633 37 H 0.128 0.872 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.393 0.607 43 H 0.012 0.988 44 H 0.115 0.885 45 H 0.262 0.738 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.274 16.605 4.042 17.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.373 5.373 3 C -0.009 4.009 4 C 0.115 3.885 5 C -0.180 4.180 6 O -0.351 6.351 7 C -0.107 4.107 8 C -0.130 4.130 9 C -0.139 4.139 10 C -0.143 4.143 11 C -0.142 4.142 12 C -0.122 4.122 13 C 0.406 3.594 14 O -0.482 6.482 15 N -0.351 5.351 16 C 0.059 3.941 17 C 0.038 3.962 18 C -0.539 4.539 19 H 0.077 0.923 20 C -0.127 4.127 21 N -0.494 5.494 22 Si 0.719 3.281 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 C -0.238 4.238 27 C -0.251 4.251 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.112 0.888 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.213 0.787 37 H 0.146 0.854 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.229 0.771 43 H 0.030 0.970 44 H 0.132 0.868 45 H 0.073 0.927 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.993 16.087 3.593 16.513 hybrid contribution -1.173 0.445 -0.658 1.417 sum -0.180 16.532 2.936 16.792 Atomic orbital electron populations 1.21643 0.80419 1.03287 1.00461 1.46783 1.05839 1.04535 1.80134 1.21872 0.98449 0.85151 0.95417 1.20615 0.82946 0.91489 0.93492 1.21687 1.00695 0.96881 0.98765 1.86664 1.32015 1.59388 1.56999 1.20580 0.98436 0.96416 0.95296 1.21225 0.95738 0.97553 0.98437 1.21146 0.99392 0.94577 0.98806 1.21150 0.98811 0.99362 0.94934 1.21137 0.96644 0.97728 0.98685 1.21028 0.99391 0.93638 0.98135 1.15817 0.85210 0.80313 0.78057 1.90814 1.11942 1.86215 1.59261 1.44930 1.11329 1.04209 1.74597 1.20901 0.96086 0.79612 0.97489 1.19233 0.95691 0.89368 0.91882 1.20424 0.98717 1.42717 0.92004 0.92347 1.24964 0.94588 0.94585 0.98573 1.69863 1.13687 1.35429 1.30449 0.86680 0.79501 0.78263 0.83685 1.20293 1.21261 1.20287 1.22938 0.96927 0.98979 1.04960 1.22947 0.96311 1.08584 0.97232 0.93720 0.91407 0.90979 0.91104 0.88806 0.90356 0.93227 0.90435 0.78668 0.85418 0.86092 0.86369 0.86264 0.85502 0.77138 0.97030 0.86784 0.92685 0.90290 0.91517 0.91447 0.90740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.16 10.29 59.85 0.62 1.78 16 2 N -0.63 -10.46 2.53 -187.36 -0.47 -10.93 16 3 C 0.12 1.63 4.26 -4.04 -0.02 1.61 16 4 C 0.16 2.22 1.01 -91.77 -0.09 2.13 16 5 C -0.12 -2.22 7.54 37.16 0.28 -1.94 16 6 O -0.55 -7.26 10.73 -35.23 -0.38 -7.64 16 7 C -0.11 -1.34 4.81 -104.62 -0.50 -1.84 16 8 C -0.11 -1.33 9.14 -39.58 -0.36 -1.69 16 9 C -0.12 -1.26 10.05 -39.59 -0.40 -1.66 16 10 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 11 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 12 C -0.10 -1.21 9.35 -39.59 -0.37 -1.58 16 13 C 0.70 14.75 6.40 -86.91 -0.56 14.19 16 14 O -0.60 -14.36 14.47 5.29 0.08 -14.28 16 15 N -0.70 -15.13 4.90 -65.23 -0.32 -15.45 16 16 C 0.18 4.36 4.62 -4.04 -0.02 4.34 16 17 C 0.04 0.92 2.04 -155.66 -0.32 0.60 16 18 C -0.50 -12.77 8.43 -34.44 -0.29 -13.06 16 19 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 20 C 0.08 2.01 5.30 -17.82 -0.09 1.91 16 21 N -0.86 -22.96 10.11 55.43 0.56 -22.40 16 22 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 23 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C -0.20 -4.38 9.96 -26.69 -0.27 -4.64 16 27 C -0.21 -4.44 9.92 -26.69 -0.26 -4.71 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.78 7.05 -51.93 -0.37 0.42 16 30 H 0.07 1.08 5.93 -51.93 -0.31 0.77 16 31 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.09 1.43 5.43 -51.93 -0.28 1.15 16 33 H 0.08 1.69 6.28 -51.93 -0.33 1.37 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 1.49 7.58 -51.93 -0.39 1.09 16 36 H 0.37 3.39 9.04 45.56 0.41 3.81 16 37 H 0.13 1.49 6.04 -52.49 -0.32 1.18 16 38 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 39 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 41 H 0.13 1.44 7.49 -52.48 -0.39 1.05 16 42 H 0.39 8.17 5.68 -40.82 -0.23 7.94 16 43 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 44 H 0.11 3.12 5.90 -51.93 -0.31 2.81 16 45 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 46 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 47 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 48 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 49 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -29.65 388.53 -9.85 -39.50 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -6.70 Total: 17.72 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.45 Total: -7.85 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: -0.23 Total: -48.78 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.30 Total: -21.92 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.65 -9.85 -39.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824535794.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.473 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds