Wall clock time and date at job start Tue Mar 31 2020 16:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46491 * 119.99870 * 2 1 4 4 C 1.53008 * 109.47214 * 270.00038 * 3 2 1 5 5 C 1.53002 * 109.46731 * 305.00333 * 4 3 2 6 6 O 1.42899 * 109.47058 * 65.00126 * 4 3 2 7 7 C 1.50696 * 109.47212 * 185.00265 * 4 3 2 8 8 C 1.38241 * 119.99874 * 29.72799 * 7 4 3 9 9 C 1.38233 * 119.99461 * 179.78856 * 8 7 4 10 10 C 1.38232 * 120.00430 * 0.43898 * 9 8 7 11 11 C 1.38233 * 119.99875 * 359.81507 * 10 9 8 12 12 C 1.38231 * 120.00064 * 359.97438 * 11 10 9 13 13 C 1.34782 * 119.99644 * 180.02562 * 2 1 3 14 14 O 1.21586 * 119.99504 * 185.16420 * 13 2 1 15 15 N 1.34776 * 120.00121 * 5.16443 * 13 2 1 16 16 C 1.46500 * 119.99964 * 185.03140 * 15 13 2 17 17 C 1.52995 * 109.47169 * 184.99218 * 16 15 13 18 18 C 1.50700 * 115.55116 * 54.04595 * 17 16 15 19 19 H 1.08001 * 120.00018 * 215.59208 * 18 17 16 20 20 C 1.37880 * 120.00007 * 35.31504 * 18 17 16 21 21 N 1.31520 * 119.99665 * 355.91481 * 20 18 17 22 22 Si 1.86792 * 120.00152 * 175.91193 * 20 18 17 23 23 H 1.48501 * 109.47030 * 59.99958 * 22 20 18 24 24 H 1.48497 * 109.47194 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47356 * 300.00048 * 22 20 18 26 26 C 1.52999 * 117.49856 * 199.71829 * 17 16 15 27 27 C 1.53007 * 117.49767 * 268.37534 * 17 16 15 28 28 H 1.08998 * 109.47161 * 274.12175 * 1 2 3 29 29 H 1.08993 * 109.47400 * 34.12047 * 1 2 3 30 30 H 1.09003 * 109.47325 * 154.12361 * 1 2 3 31 31 H 1.08994 * 109.47855 * 30.00271 * 3 2 1 32 32 H 1.09001 * 109.46999 * 150.00337 * 3 2 1 33 33 H 1.09002 * 109.47161 * 60.00279 * 5 4 3 34 34 H 1.09002 * 109.46613 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47247 * 299.99545 * 5 4 3 36 36 H 0.96701 * 113.99602 * 60.00214 * 6 4 3 37 37 H 1.07993 * 120.00178 * 359.97438 * 8 7 4 38 38 H 1.08005 * 119.99739 * 180.27614 * 9 8 7 39 39 H 1.08006 * 120.00156 * 179.83613 * 10 9 8 40 40 H 1.08005 * 119.99996 * 179.97438 * 11 10 9 41 41 H 1.08007 * 120.00398 * 180.02562 * 12 11 10 42 42 H 0.97000 * 120.00083 * 5.03275 * 15 13 2 43 43 H 1.08999 * 109.46889 * 64.98852 * 16 15 13 44 44 H 1.09001 * 109.47156 * 304.99050 * 16 15 13 45 45 H 0.96997 * 119.99178 * 184.99796 * 21 20 18 46 46 H 1.09002 * 117.49879 * 215.00186 * 26 17 16 47 47 H 1.09006 * 117.49901 * 0.02562 * 26 17 16 48 48 H 1.08997 * 117.49678 * 359.97438 * 27 17 16 49 49 H 1.09002 * 117.49675 * 144.97418 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4524 1.7104 -1.4426 5 6 3.1707 0.5912 -2.1992 6 8 1.2059 1.9935 -2.0814 7 6 3.3106 2.9491 -1.4444 8 6 4.2176 3.1631 -0.4232 9 6 5.0078 4.2972 -0.4273 10 6 4.8848 5.2218 -1.4475 11 6 3.9742 5.0104 -2.4658 12 6 3.1870 3.8742 -2.4641 13 6 2.1388 -1.1673 -0.0005 14 8 3.3510 -1.1694 0.0943 15 7 1.4690 -2.3320 -0.1061 16 6 2.1886 -3.6034 0.0039 17 6 1.2262 -4.7598 -0.2741 18 6 0.4743 -4.6806 -1.5777 19 1 -0.5443 -5.0349 -1.6360 20 6 1.0848 -4.1505 -2.6946 21 7 2.2937 -3.6408 -2.6036 22 14 0.1949 -4.1565 -4.3369 23 1 -1.0683 -3.3848 -4.2182 24 1 1.0602 -3.5346 -5.3711 25 1 -0.1146 -5.5555 -4.7272 26 6 1.6273 -6.1487 0.2268 27 6 0.5018 -5.3794 0.9228 28 1 -0.3633 0.0739 1.0250 29 1 -0.3634 0.8507 -0.5764 30 1 -0.3634 -0.9246 -0.4485 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 2.5499 -0.3048 -2.1979 34 1 3.3519 0.9057 -3.2270 35 1 4.1215 0.3752 -1.7119 36 1 0.6955 2.6950 -1.6542 37 1 4.3108 2.4428 0.3760 38 1 5.7196 4.4623 0.3681 39 1 5.5005 6.1093 -1.4492 40 1 3.8778 5.7330 -3.2627 41 1 2.4757 3.7087 -3.2599 42 1 0.5105 -2.3285 -0.2550 43 1 2.5966 -3.7040 1.0096 44 1 3.0015 -3.6248 -0.7219 45 1 2.6944 -3.2031 -3.3708 46 1 1.3474 -7.0052 -0.3866 47 1 2.5767 -6.2385 0.7548 48 1 0.7112 -4.9634 1.9082 49 1 -0.5188 -5.7293 0.7673 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824535794.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:50:03 Heat of formation + Delta-G solvation = -28.693849 kcal Electronic energy + Delta-G solvation = -29964.242380 eV Core-core repulsion = 26085.114872 eV Total energy + Delta-G solvation = -3879.127509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.48429 -40.35246 -38.67936 -38.01598 -35.90775 -34.73575 -34.09934 -33.32717 -31.76773 -30.35755 -28.63556 -27.88221 -27.38615 -26.06618 -24.01805 -23.27612 -22.93524 -21.34141 -21.07392 -20.50068 -19.26677 -18.38821 -17.90946 -17.59011 -16.93534 -16.76137 -16.61846 -16.03965 -15.63784 -15.57272 -15.44627 -15.05194 -14.72657 -14.54314 -14.32937 -14.16189 -13.97864 -13.64699 -13.52858 -13.38257 -13.31942 -13.15795 -12.99738 -12.87123 -12.60859 -12.58052 -12.47402 -12.30199 -12.06075 -12.00234 -11.72787 -11.48768 -11.24914 -10.94008 -10.81087 -10.62690 -10.12369 -9.81972 -9.79279 -9.64593 -9.12066 -7.88755 -6.15941 0.39803 0.50185 1.41394 1.44569 1.50297 1.93204 2.41777 2.50275 2.85639 3.03016 3.27557 3.37465 3.65385 3.71467 3.81994 3.99560 4.12720 4.17286 4.29253 4.30560 4.38397 4.55535 4.57560 4.58275 4.67189 4.68222 4.77901 4.79059 4.84456 4.86361 4.88741 4.98114 4.99158 5.09682 5.15236 5.17350 5.26737 5.32910 5.55551 5.56367 5.62399 5.63740 5.65055 5.76880 6.01791 6.06854 6.10934 6.20523 6.41619 6.84749 6.85315 7.37522 7.49016 7.93898 8.94202 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016139 B = 0.003518 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1734.543703 B = 7956.486921 C = 8733.775804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.629 5.629 3 C 0.115 3.885 4 C 0.171 3.829 5 C -0.113 4.113 6 O -0.556 6.556 7 C -0.119 4.119 8 C -0.125 4.125 9 C -0.125 4.125 10 C -0.122 4.122 11 C -0.125 4.125 12 C -0.112 4.112 13 C 0.699 3.301 14 O -0.639 6.639 15 N -0.699 5.699 16 C 0.197 3.803 17 C 0.010 3.990 18 C -0.507 4.507 19 H 0.057 0.943 20 C 0.041 3.959 21 N -0.879 5.879 22 Si 0.941 3.059 23 H -0.268 1.268 24 H -0.297 1.297 25 H -0.275 1.275 26 C -0.201 4.201 27 C -0.185 4.185 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.388 0.612 37 H 0.122 0.878 38 H 0.141 0.859 39 H 0.146 0.854 40 H 0.143 0.857 41 H 0.126 0.874 42 H 0.397 0.603 43 H 0.009 0.991 44 H 0.075 0.925 45 H 0.252 0.748 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.084 0.916 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.587 18.827 4.664 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.366 5.366 3 C -0.009 4.009 4 C 0.129 3.871 5 C -0.170 4.170 6 O -0.363 6.363 7 C -0.120 4.120 8 C -0.143 4.143 9 C -0.143 4.143 10 C -0.140 4.140 11 C -0.143 4.143 12 C -0.131 4.131 13 C 0.401 3.599 14 O -0.522 6.522 15 N -0.351 5.351 16 C 0.072 3.928 17 C 0.009 3.991 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.162 4.162 21 N -0.515 5.515 22 Si 0.768 3.232 23 H -0.193 1.193 24 H -0.223 1.223 25 H -0.200 1.200 26 C -0.239 4.239 27 C -0.222 4.222 28 H 0.089 0.911 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.237 0.763 37 H 0.140 0.860 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.144 0.856 42 H 0.233 0.767 43 H 0.027 0.973 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.381 18.341 4.229 18.826 hybrid contribution -0.745 -0.202 -0.844 1.144 sum -1.126 18.139 3.385 18.487 Atomic orbital electron populations 1.21847 0.78317 1.03471 1.02404 1.46819 1.07181 1.03864 1.78772 1.22062 0.98373 0.84742 0.95734 1.20211 0.83418 0.90987 0.92493 1.21487 0.99490 0.96945 0.99113 1.86606 1.31821 1.60507 1.57405 1.20385 0.99080 0.96053 0.96445 1.21295 0.96244 0.98300 0.98428 1.21433 0.99228 0.93994 0.99644 1.21522 0.98454 0.99916 0.94077 1.21446 0.96003 0.97489 0.99380 1.21113 0.99975 0.94138 0.97826 1.16015 0.84886 0.81252 0.77757 1.90777 1.13706 1.86947 1.60802 1.44793 1.11321 1.03978 1.75026 1.20512 0.95384 0.80990 0.95908 1.19259 0.97009 0.90080 0.92725 1.20624 0.98657 1.42244 0.92897 0.92493 1.25512 0.95067 0.94614 1.00975 1.70073 1.14837 1.36328 1.30275 0.85876 0.78655 0.78154 0.80489 1.19338 1.22317 1.20016 1.22956 0.98046 0.97867 1.05060 1.22934 0.96290 1.06283 0.96724 0.91127 0.88952 0.92703 0.87181 0.90298 0.94323 0.93500 0.92526 0.76281 0.85974 0.84102 0.83589 0.83948 0.85568 0.76694 0.97302 0.90717 0.93803 0.90527 0.90690 0.89758 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.09 10.29 127.77 1.31 3.41 16 2 N -0.63 -20.61 2.53 -864.94 -2.19 -22.80 16 3 C 0.11 3.15 4.26 86.38 0.37 3.52 16 4 C 0.17 4.82 1.01 -11.54 -0.01 4.80 16 5 C -0.11 -4.30 7.54 71.98 0.54 -3.76 16 6 O -0.56 -14.08 10.73 -148.98 -1.60 -15.68 16 7 C -0.12 -2.90 4.81 -19.87 -0.10 -2.99 16 8 C -0.12 -2.87 9.14 22.27 0.20 -2.66 16 9 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 10 C -0.12 -2.03 10.05 22.27 0.22 -1.80 16 11 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 12 C -0.11 -2.45 9.35 22.27 0.21 -2.25 16 13 C 0.70 30.21 6.40 179.05 1.15 31.35 16 14 O -0.64 -32.07 14.47 -3.99 -0.06 -32.12 16 15 N -0.70 -31.05 4.90 -478.54 -2.34 -33.40 16 16 C 0.20 9.67 4.62 86.38 0.40 10.07 16 17 C 0.01 0.47 2.04 -52.93 -0.11 0.36 16 18 C -0.51 -25.90 8.43 25.60 0.22 -25.69 16 19 H 0.06 2.87 7.82 -2.91 -0.02 2.85 16 20 C 0.04 2.13 5.30 84.65 0.45 2.58 16 21 N -0.88 -48.91 10.11 21.45 0.22 -48.69 16 22 Si 0.94 42.59 29.54 68.60 2.03 44.61 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 26 C -0.20 -8.69 9.96 30.62 0.30 -8.38 16 27 C -0.19 -7.40 9.92 30.62 0.30 -7.10 16 28 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 1.89 7.05 -2.39 -0.02 1.87 16 30 H 0.05 1.60 5.93 -2.39 -0.01 1.59 16 31 H 0.11 2.16 8.07 -2.39 -0.02 2.14 16 32 H 0.08 2.45 5.43 -2.39 -0.01 2.43 16 33 H 0.04 1.76 6.28 -2.39 -0.01 1.74 16 34 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 36 H 0.39 6.18 9.04 -74.06 -0.67 5.51 16 37 H 0.12 2.88 6.04 -2.91 -0.02 2.86 16 38 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 39 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 40 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.13 2.71 7.49 -2.91 -0.02 2.69 16 42 H 0.40 16.73 5.68 -92.71 -0.53 16.20 16 43 H 0.01 0.43 8.09 -2.39 -0.02 0.41 16 44 H 0.07 4.31 5.90 -2.39 -0.01 4.29 16 45 H 0.25 14.15 8.32 -92.71 -0.77 13.38 16 46 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 47 H 0.07 3.08 8.14 -2.38 -0.02 3.07 16 48 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 49 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -66.66 388.53 1.74 -64.91 By element: Atomic # 1 Polarization: 46.06 SS G_CDS: -0.22 Total: 45.83 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 5.91 Total: -2.67 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -4.32 Total: -104.88 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -1.66 Total: -47.80 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -66.66 1.74 -64.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824535794.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.221 kcal (2) G-P(sol) polarization free energy of solvation -66.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds