Wall clock time and date at job start Tue Mar 31 2020 16:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47166 * 2 1 4 4 N 1.46894 * 109.47389 * 120.00523 * 2 1 3 5 5 C 1.48530 * 111.00225 * 182.27352 * 4 2 1 6 6 C 1.54936 * 103.22702 * 200.27713 * 5 4 2 7 7 C 1.54594 * 102.92299 * 37.41674 * 6 5 4 8 8 H 1.08997 * 110.39464 * 219.08700 * 7 6 5 9 9 N 1.46504 * 110.31402 * 96.95665 * 7 6 5 10 10 C 1.46495 * 119.99398 * 304.28589 * 9 7 6 11 11 C 1.34769 * 119.99989 * 124.28339 * 9 7 6 12 12 O 1.21594 * 120.00297 * 357.02324 * 11 9 7 13 13 C 1.47540 * 120.00017 * 177.02051 * 11 9 7 14 14 C 1.39660 * 120.19371 * 332.53313 * 13 11 9 15 15 C 1.37832 * 119.92068 * 179.97438 * 14 13 11 16 16 C 1.38575 * 120.31768 * 0.02562 * 15 14 13 17 17 C 1.38024 * 120.40515 * 359.71618 * 16 15 14 18 18 C 1.38844 * 120.06942 * 0.55945 * 17 16 15 19 19 O 1.35520 * 120.16041 * 179.71735 * 18 17 16 20 20 C 1.34812 * 116.99700 * 5.39177 * 19 18 17 21 21 H 1.08001 * 120.00536 * 354.93139 * 20 19 18 22 22 C 1.38697 * 119.99602 * 174.93600 * 20 19 18 23 23 N 1.31517 * 120.00459 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00216 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46890 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47540 * 119.99814 * 24 22 20 27 27 H 1.48505 * 109.47302 * 240.00375 * 24 22 20 28 28 C 1.47901 * 110.99930 * 64.87402 * 4 2 1 29 29 H 1.09002 * 109.47094 * 300.00044 * 1 2 3 30 30 H 1.09001 * 109.47228 * 59.99783 * 1 2 3 31 31 H 1.09000 * 109.47838 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46584 * 240.00520 * 2 1 3 33 33 H 1.09004 * 109.46796 * 185.84717 * 3 2 1 34 34 H 1.08997 * 109.47042 * 305.84743 * 3 2 1 35 35 H 1.09007 * 109.46824 * 65.85266 * 3 2 1 36 36 H 1.09002 * 110.66807 * 318.71311 * 5 4 2 37 37 H 1.08997 * 110.66616 * 81.67842 * 5 4 2 38 38 H 1.09001 * 110.72429 * 279.05864 * 6 5 4 39 39 H 1.09000 * 110.72536 * 155.77346 * 6 5 4 40 40 H 1.08996 * 109.47395 * 275.89311 * 10 9 7 41 41 H 1.09003 * 109.47287 * 35.89965 * 10 9 7 42 42 H 1.09003 * 109.46530 * 155.89189 * 10 9 7 43 43 H 1.08004 * 120.04111 * 359.95939 * 14 13 11 44 44 H 1.07995 * 119.83967 * 179.97438 * 15 14 13 45 45 H 1.07999 * 119.79869 * 180.02562 * 16 15 14 46 46 H 1.07999 * 119.97185 * 180.28384 * 17 16 15 47 47 H 0.97001 * 120.00751 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.92028 * 26.49602 * 28 4 2 49 49 H 1.09004 * 109.91949 * 265.19985 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.5034 -0.6649 1.2614 6 6 3.8397 -1.8318 2.2237 7 6 2.7883 -2.9018 1.8503 8 1 2.4260 -3.4070 2.7456 9 7 3.3614 -3.8737 0.9157 10 6 3.9552 -3.4169 -0.3431 11 6 3.3422 -5.1878 1.2142 12 8 2.8985 -5.5622 2.2826 13 6 3.8596 -6.1721 0.2446 14 6 3.8333 -5.8913 -1.1232 15 6 4.3186 -6.8147 -2.0241 16 6 4.8328 -8.0223 -1.5795 17 6 4.8701 -8.3114 -0.2304 18 6 4.3804 -7.3955 0.6911 19 8 4.4108 -7.6799 2.0158 20 6 5.0304 -8.8195 2.3830 21 1 5.4019 -9.4990 1.6302 22 6 5.1907 -9.1194 3.7276 23 7 4.7387 -8.2918 4.6444 24 14 6.0485 -10.6987 4.2367 25 1 6.4598 -11.4515 3.0244 26 1 7.2488 -10.3711 5.0473 27 1 5.1184 -11.5297 5.0428 28 6 1.6436 -2.1228 1.1761 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 3.1250 1.4442 -0.1047 34 1 1.5937 1.9856 -0.8330 35 1 1.7647 1.9252 0.9378 36 1 3.9331 -0.8431 0.2757 37 1 3.8538 0.2843 1.6666 38 1 3.7224 -1.5215 3.2620 39 1 4.8485 -2.2026 2.0424 40 1 3.1720 -3.2954 -1.0913 41 1 4.4563 -2.4622 -0.1832 42 1 4.6794 -4.1534 -0.6915 43 1 3.4330 -4.9518 -1.4747 44 1 4.2973 -6.5964 -3.0815 45 1 5.2112 -8.7396 -2.2927 46 1 5.2765 -9.2528 0.1086 47 1 4.8510 -8.5013 5.5849 48 1 1.5224 -2.4583 0.1461 49 1 0.7165 -2.2720 1.7296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837186393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:45 Heat of formation + Delta-G solvation = -2.047680 kcal Electronic energy + Delta-G solvation = -29532.112077 eV Core-core repulsion = 25654.140033 eV Total energy + Delta-G solvation = -3877.972044 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.35732 -39.23876 -37.89660 -36.42484 -35.39618 -33.41809 -32.35825 -30.68825 -29.45307 -29.00201 -28.59593 -27.14439 -26.26707 -25.41190 -23.18241 -22.19890 -21.70402 -20.57488 -20.10507 -18.96905 -18.06655 -17.15525 -16.59339 -16.49319 -15.88605 -15.19935 -14.94080 -14.69562 -14.61506 -14.08680 -14.00270 -13.90300 -13.70480 -13.52161 -13.11760 -13.02997 -12.72478 -12.49962 -12.43340 -12.30056 -12.23564 -12.01593 -11.74060 -11.58899 -11.52393 -11.29318 -11.25123 -11.10107 -11.05739 -10.97073 -10.89964 -10.71595 -10.55131 -10.41477 -9.57359 -8.90893 -8.89567 -8.57864 -8.23284 -8.19246 -7.32863 -6.46823 -4.06782 1.72818 2.29013 3.10914 3.11186 3.17343 3.33236 3.62155 3.89078 3.92013 4.52689 4.56855 4.62841 4.77243 4.97169 5.02779 5.08515 5.10888 5.14640 5.21251 5.24917 5.34761 5.39037 5.46120 5.49285 5.53216 5.56404 5.61305 5.66085 5.68259 5.74589 5.84580 5.88408 5.92590 5.97908 5.98464 6.07087 6.12914 6.17804 6.28552 6.55100 6.60838 6.70372 6.90258 6.95962 7.02684 7.06772 7.23744 7.27994 7.67659 7.85973 7.96535 8.93278 8.99198 9.64887 10.67703 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.003165 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.353815 B = 8843.715278 C =10011.897043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.067 3.933 3 C -0.145 4.145 4 N -0.510 5.510 5 C 0.033 3.967 6 C -0.133 4.133 7 C 0.134 3.866 8 H 0.112 0.888 9 N -0.618 5.618 10 C 0.067 3.933 11 C 0.564 3.436 12 O -0.505 6.505 13 C -0.226 4.226 14 C -0.053 4.053 15 C -0.232 4.232 16 C -0.051 4.051 17 C -0.238 4.238 18 C 0.191 3.809 19 O -0.133 6.133 20 C -0.402 4.402 21 H 0.095 0.905 22 C 0.044 3.956 23 N -0.836 5.836 24 Si 0.941 3.059 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.274 1.274 28 C 0.029 3.971 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.128 0.872 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.132 0.868 47 H 0.271 0.729 48 H 0.052 0.948 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.294 14.762 -11.398 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.041 4.041 3 C -0.202 4.202 4 N -0.236 5.236 5 C -0.094 4.094 6 C -0.172 4.172 7 C 0.029 3.971 8 H 0.130 0.870 9 N -0.354 5.354 10 C -0.075 4.075 11 C 0.355 3.645 12 O -0.379 6.379 13 C -0.230 4.230 14 C -0.072 4.072 15 C -0.251 4.251 16 C -0.070 4.070 17 C -0.258 4.258 18 C 0.132 3.868 19 O -0.032 6.032 20 C -0.478 4.478 21 H 0.112 0.888 22 C -0.163 4.163 23 N -0.468 5.468 24 Si 0.766 3.234 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.200 1.200 28 C -0.100 4.100 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.110 0.890 43 H 0.146 0.854 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.888 14.935 -9.844 18.119 hybrid contribution 0.812 -1.214 -0.732 1.634 sum -2.076 13.721 -10.577 17.448 Atomic orbital electron populations 1.21825 0.94246 1.02114 1.01961 1.21801 0.95993 0.95202 0.91127 1.21855 1.00792 0.95277 1.02288 1.64882 1.09629 1.11778 1.37279 1.23336 0.88267 0.99335 0.98476 1.22867 0.99494 0.94581 1.00263 1.21750 0.92330 0.89255 0.93720 0.87050 1.47737 1.61253 1.06052 1.20332 1.22317 0.98047 1.01090 0.86085 1.18301 0.78449 0.81140 0.86601 1.90871 1.44715 1.78612 1.23724 1.18754 1.15909 0.95241 0.93122 1.21370 0.95985 0.98406 0.91400 1.20493 1.10016 0.96276 0.98330 1.20906 0.95447 0.95823 0.94785 1.21150 1.09744 1.01877 0.92987 1.19248 0.91058 0.91031 0.85475 1.84113 1.62909 1.39470 1.16666 1.21518 1.36876 0.96761 0.92631 0.88795 1.25380 0.97023 0.99342 0.94581 1.70113 1.40523 1.35092 1.01091 0.85653 0.78791 0.79830 0.79165 1.18974 1.20015 1.19977 1.23256 0.99103 0.87290 1.00368 0.91772 0.92467 0.92627 0.94221 0.92789 0.92349 0.91694 0.93554 0.90102 0.89785 0.90271 0.93438 0.92083 0.88970 0.85438 0.87293 0.87227 0.85080 0.91864 0.93001 0.89741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.17 37.16 0.34 -0.91 16 2 C 0.07 0.63 2.38 -67.72 -0.16 0.47 16 3 C -0.14 -1.13 8.83 37.16 0.33 -0.80 16 4 N -0.51 -5.64 5.11 -222.50 -1.14 -6.78 16 5 C 0.03 0.35 4.97 -1.90 -0.01 0.34 16 6 C -0.13 -1.70 6.13 -24.87 -0.15 -1.85 16 7 C 0.13 2.04 3.44 -66.57 -0.23 1.81 16 8 H 0.11 2.03 6.96 -51.93 -0.36 1.67 16 9 N -0.62 -10.35 2.72 -173.60 -0.47 -10.83 16 10 C 0.07 0.86 7.72 59.84 0.46 1.32 16 11 C 0.56 12.53 7.39 -12.47 -0.09 12.44 16 12 O -0.51 -13.76 15.02 -14.40 -0.22 -13.97 16 13 C -0.23 -4.91 5.47 -104.81 -0.57 -5.48 16 14 C -0.05 -0.91 7.48 -39.20 -0.29 -1.21 16 15 C -0.23 -3.77 10.03 -39.61 -0.40 -4.17 16 16 C -0.05 -0.90 10.03 -39.54 -0.40 -1.29 16 17 C -0.24 -5.12 9.16 -39.44 -0.36 -5.48 16 18 C 0.19 4.74 6.63 -38.60 -0.26 4.48 16 19 O -0.13 -3.92 8.20 -18.88 -0.15 -4.08 16 20 C -0.40 -11.37 9.49 30.90 0.29 -11.08 16 21 H 0.09 2.42 5.20 -52.49 -0.27 2.14 16 22 C 0.04 1.23 5.49 -17.52 -0.10 1.13 16 23 N -0.84 -25.19 13.67 55.48 0.76 -24.43 16 24 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 C 0.03 0.36 5.06 -2.75 -0.01 0.35 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.52 7.34 -51.93 -0.38 0.14 16 32 H 0.04 0.38 7.96 -51.93 -0.41 -0.03 16 33 H 0.05 0.41 7.21 -51.93 -0.37 0.03 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.46 6.01 -51.93 -0.31 0.15 16 37 H 0.08 0.77 7.77 -51.93 -0.40 0.36 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.06 7.81 -51.93 -0.41 0.65 16 40 H 0.05 0.52 6.78 -51.93 -0.35 0.17 16 41 H 0.06 0.67 4.97 -51.93 -0.26 0.41 16 42 H 0.09 1.25 5.05 -51.93 -0.26 0.99 16 43 H 0.13 1.78 4.64 -52.48 -0.24 1.53 16 44 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 46 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 48 H 0.05 0.66 6.62 -51.93 -0.34 0.31 16 49 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 377.74 15.07 5.69 5.69 Total: -1.00 -33.67 377.74 -9.36 -43.03 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.20 Total: 5.77 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -1.61 Total: -9.93 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.85 Total: -42.03 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.37 Total: -18.05 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.67 -9.36 -43.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837186393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.979 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds