Wall clock time and date at job start Tue Mar 31 2020 16:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47166 * 2 1 4 4 N 1.46894 * 109.47389 * 120.00523 * 2 1 3 5 5 C 1.48530 * 111.00225 * 182.27352 * 4 2 1 6 6 C 1.54936 * 103.22702 * 200.27713 * 5 4 2 7 7 C 1.54594 * 102.92299 * 37.41674 * 6 5 4 8 8 H 1.08997 * 110.39464 * 219.08700 * 7 6 5 9 9 N 1.46504 * 110.31402 * 96.95665 * 7 6 5 10 10 C 1.46495 * 119.99398 * 304.28589 * 9 7 6 11 11 C 1.34769 * 119.99989 * 124.28339 * 9 7 6 12 12 O 1.21594 * 120.00297 * 357.02324 * 11 9 7 13 13 C 1.47540 * 120.00017 * 177.02051 * 11 9 7 14 14 C 1.39660 * 120.19371 * 332.53313 * 13 11 9 15 15 C 1.37832 * 119.92068 * 179.97438 * 14 13 11 16 16 C 1.38575 * 120.31768 * 0.02562 * 15 14 13 17 17 C 1.38024 * 120.40515 * 359.71618 * 16 15 14 18 18 C 1.38844 * 120.06942 * 0.55945 * 17 16 15 19 19 O 1.35520 * 120.16041 * 179.71735 * 18 17 16 20 20 C 1.34812 * 116.99700 * 5.39177 * 19 18 17 21 21 H 1.08001 * 120.00536 * 354.93139 * 20 19 18 22 22 C 1.38697 * 119.99602 * 174.93600 * 20 19 18 23 23 N 1.31517 * 120.00459 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00216 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.46890 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47540 * 119.99814 * 24 22 20 27 27 H 1.48505 * 109.47302 * 240.00375 * 24 22 20 28 28 C 1.47901 * 110.99930 * 64.87402 * 4 2 1 29 29 H 1.09002 * 109.47094 * 300.00044 * 1 2 3 30 30 H 1.09001 * 109.47228 * 59.99783 * 1 2 3 31 31 H 1.09000 * 109.47838 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46584 * 240.00520 * 2 1 3 33 33 H 1.09004 * 109.46796 * 185.84717 * 3 2 1 34 34 H 1.08997 * 109.47042 * 305.84743 * 3 2 1 35 35 H 1.09007 * 109.46824 * 65.85266 * 3 2 1 36 36 H 1.09002 * 110.66807 * 318.71311 * 5 4 2 37 37 H 1.08997 * 110.66616 * 81.67842 * 5 4 2 38 38 H 1.09001 * 110.72429 * 279.05864 * 6 5 4 39 39 H 1.09000 * 110.72536 * 155.77346 * 6 5 4 40 40 H 1.08996 * 109.47395 * 275.89311 * 10 9 7 41 41 H 1.09003 * 109.47287 * 35.89965 * 10 9 7 42 42 H 1.09003 * 109.46530 * 155.89189 * 10 9 7 43 43 H 1.08004 * 120.04111 * 359.95939 * 14 13 11 44 44 H 1.07995 * 119.83967 * 179.97438 * 15 14 13 45 45 H 1.07999 * 119.79869 * 180.02562 * 16 15 14 46 46 H 1.07999 * 119.97185 * 180.28384 * 17 16 15 47 47 H 0.97001 * 120.00751 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.92028 * 26.49602 * 28 4 2 49 49 H 1.09004 * 109.91949 * 265.19985 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 3.5034 -0.6649 1.2614 6 6 3.8397 -1.8318 2.2237 7 6 2.7883 -2.9018 1.8503 8 1 2.4260 -3.4070 2.7456 9 7 3.3614 -3.8737 0.9157 10 6 3.9552 -3.4169 -0.3431 11 6 3.3422 -5.1878 1.2142 12 8 2.8985 -5.5622 2.2826 13 6 3.8596 -6.1721 0.2446 14 6 3.8333 -5.8913 -1.1232 15 6 4.3186 -6.8147 -2.0241 16 6 4.8328 -8.0223 -1.5795 17 6 4.8701 -8.3114 -0.2304 18 6 4.3804 -7.3955 0.6911 19 8 4.4108 -7.6799 2.0158 20 6 5.0304 -8.8195 2.3830 21 1 5.4019 -9.4990 1.6302 22 6 5.1907 -9.1194 3.7276 23 7 4.7387 -8.2918 4.6444 24 14 6.0485 -10.6987 4.2367 25 1 6.4598 -11.4515 3.0244 26 1 7.2488 -10.3711 5.0473 27 1 5.1184 -11.5297 5.0428 28 6 1.6436 -2.1228 1.1761 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8932 -0.5138 -0.8901 33 1 3.1250 1.4442 -0.1047 34 1 1.5937 1.9856 -0.8330 35 1 1.7647 1.9252 0.9378 36 1 3.9331 -0.8431 0.2757 37 1 3.8538 0.2843 1.6666 38 1 3.7224 -1.5215 3.2620 39 1 4.8485 -2.2026 2.0424 40 1 3.1720 -3.2954 -1.0913 41 1 4.4563 -2.4622 -0.1832 42 1 4.6794 -4.1534 -0.6915 43 1 3.4330 -4.9518 -1.4747 44 1 4.2973 -6.5964 -3.0815 45 1 5.2112 -8.7396 -2.2927 46 1 5.2765 -9.2528 0.1086 47 1 4.8510 -8.5013 5.5849 48 1 1.5224 -2.4583 0.1461 49 1 0.7165 -2.2720 1.7296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837186393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:44 Heat of formation + Delta-G solvation = -25.024054 kcal Electronic energy + Delta-G solvation = -29533.108407 eV Core-core repulsion = 25654.140033 eV Total energy + Delta-G solvation = -3878.968374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.77177 -40.64893 -39.41857 -38.11739 -36.68624 -34.56025 -34.33574 -32.09802 -30.65390 -30.38161 -29.70064 -28.05030 -27.47243 -27.30480 -24.61098 -23.36979 -23.10993 -21.91321 -20.95120 -20.39131 -19.89846 -18.79256 -18.14957 -17.57531 -17.10530 -16.61319 -16.45362 -16.25910 -15.69487 -15.65577 -15.44547 -15.28304 -15.09026 -14.77941 -14.45646 -14.26313 -14.17408 -13.71738 -13.60257 -13.48357 -13.32187 -13.13372 -12.97842 -12.92004 -12.76767 -12.57752 -12.52570 -12.47814 -12.15824 -12.12706 -12.03325 -11.88552 -11.76713 -11.68352 -11.41534 -10.86158 -10.61106 -9.80643 -9.69824 -9.33731 -9.04096 -8.47617 -6.18560 0.14291 0.70208 1.30899 1.41464 1.50891 1.90923 2.04130 2.14013 2.82840 2.99275 3.17300 3.41480 3.50601 3.62702 3.82652 3.98446 4.00918 4.13301 4.15272 4.18109 4.25774 4.31193 4.34620 4.44980 4.51957 4.54272 4.57175 4.62402 4.76783 4.82548 4.85468 4.90792 4.95681 4.97972 5.01329 5.04347 5.05827 5.06706 5.11534 5.12670 5.31998 5.42018 5.47250 5.55346 5.62156 5.68922 5.91598 5.94232 6.15074 6.15938 6.41660 6.92479 7.34649 7.77356 8.73780 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016434 B = 0.003165 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.353815 B = 8843.715278 C =10011.897043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.065 3.935 3 C -0.140 4.140 4 N -0.516 5.516 5 C 0.045 3.955 6 C -0.130 4.130 7 C 0.125 3.875 8 H 0.065 0.935 9 N -0.605 5.605 10 C 0.058 3.942 11 C 0.553 3.447 12 O -0.576 6.576 13 C -0.242 4.242 14 C -0.044 4.044 15 C -0.200 4.200 16 C -0.040 4.040 17 C -0.257 4.257 18 C 0.150 3.850 19 O -0.199 6.199 20 C -0.424 4.424 21 H 0.107 0.893 22 C -0.023 4.023 23 N -0.909 5.909 24 Si 1.023 2.977 25 H -0.245 1.245 26 H -0.267 1.267 27 H -0.270 1.270 28 C 0.044 3.956 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.170 0.830 44 H 0.166 0.834 45 H 0.154 0.846 46 H 0.123 0.877 47 H 0.271 0.729 48 H 0.059 0.941 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 16.482 -16.767 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.044 4.044 3 C -0.198 4.198 4 N -0.242 5.242 5 C -0.083 4.083 6 C -0.169 4.169 7 C 0.021 3.979 8 H 0.084 0.916 9 N -0.339 5.339 10 C -0.082 4.082 11 C 0.344 3.656 12 O -0.455 6.455 13 C -0.246 4.246 14 C -0.061 4.061 15 C -0.218 4.218 16 C -0.059 4.059 17 C -0.277 4.277 18 C 0.095 3.905 19 O -0.102 6.102 20 C -0.500 4.500 21 H 0.125 0.875 22 C -0.222 4.222 23 N -0.546 5.546 24 Si 0.841 3.159 25 H -0.168 1.168 26 H -0.192 1.192 27 H -0.195 1.195 28 C -0.085 4.085 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.187 0.813 44 H 0.183 0.817 45 H 0.172 0.828 46 H 0.140 0.860 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -2.065 16.723 -15.336 22.784 hybrid contribution 0.483 -1.492 0.504 1.648 sum -1.582 15.231 -14.831 21.318 Atomic orbital electron populations 1.21823 0.94038 1.01603 1.02552 1.21925 0.96225 0.95945 0.90255 1.21827 1.01237 0.94078 1.02630 1.64902 1.10095 1.10315 1.38909 1.23307 0.87878 0.98675 0.98396 1.22820 0.98188 0.94805 1.01054 1.21826 0.94343 0.89277 0.92471 0.91630 1.47730 1.59948 1.04420 1.21754 1.22624 0.98991 1.02010 0.84612 1.18669 0.77892 0.83070 0.85921 1.90839 1.48029 1.80157 1.26501 1.19183 1.15674 0.94441 0.95325 1.21870 0.94867 1.00346 0.89048 1.21210 1.05494 0.94302 1.00796 1.21439 0.93737 0.97282 0.93393 1.21291 1.10512 1.01237 0.94620 1.20034 0.92356 0.93075 0.84997 1.84116 1.66197 1.40646 1.19237 1.22052 1.37201 0.97276 0.93499 0.87534 1.26765 0.97755 1.03438 0.94231 1.70305 1.44473 1.38397 1.01397 0.84493 0.77421 0.74721 0.79244 1.16786 1.19221 1.19496 1.23010 0.97269 0.88166 1.00038 0.92435 0.90668 0.93692 0.93506 0.92167 0.90810 0.92363 0.91940 0.88404 0.90194 0.90937 0.90084 0.89574 0.89293 0.81323 0.81688 0.82838 0.85969 0.91991 0.92231 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.17 71.98 0.66 -1.48 16 2 C 0.06 0.99 2.38 44.92 0.11 1.10 16 3 C -0.14 -1.68 8.83 71.98 0.64 -1.05 16 4 N -0.52 -10.39 5.11 -857.87 -4.38 -14.77 16 5 C 0.04 0.81 4.97 86.65 0.43 1.25 16 6 C -0.13 -3.32 6.13 31.80 0.19 -3.13 16 7 C 0.13 3.97 3.44 45.87 0.16 4.13 16 8 H 0.07 2.69 6.96 -2.39 -0.02 2.67 16 9 N -0.60 -20.40 2.72 -821.43 -2.24 -22.64 16 10 C 0.06 1.29 7.72 127.77 0.99 2.28 16 11 C 0.55 25.96 7.39 86.70 0.64 26.60 16 12 O -0.58 -34.67 15.02 14.81 0.22 -34.45 16 13 C -0.24 -10.66 5.47 -19.99 -0.11 -10.77 16 14 C -0.04 -1.33 7.48 22.52 0.17 -1.16 16 15 C -0.20 -5.27 10.03 22.25 0.22 -5.04 16 16 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 17 C -0.26 -11.06 9.16 22.36 0.20 -10.85 16 18 C 0.15 7.81 6.63 22.91 0.15 7.96 16 19 O -0.20 -12.81 8.20 -1.21 -0.01 -12.82 16 20 C -0.42 -25.89 9.49 67.93 0.64 -25.25 16 21 H 0.11 5.84 5.20 -2.91 -0.02 5.82 16 22 C -0.02 -1.39 5.49 84.85 0.47 -0.92 16 23 N -0.91 -59.98 13.67 21.62 0.30 -59.68 16 24 Si 1.02 44.60 29.55 68.60 2.03 46.62 16 25 H -0.24 -9.63 7.11 99.48 0.71 -8.92 16 26 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 28 C 0.04 1.09 5.06 86.45 0.44 1.53 16 29 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.04 0.76 7.34 -2.39 -0.02 0.75 16 32 H 0.05 0.68 7.96 -2.39 -0.02 0.66 16 33 H 0.06 0.66 7.21 -2.39 -0.02 0.64 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.06 0.96 6.01 -2.39 -0.01 0.95 16 37 H 0.10 1.54 7.77 -2.39 -0.02 1.52 16 38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.07 1.94 7.81 -2.39 -0.02 1.92 16 40 H 0.08 1.32 6.78 -2.39 -0.02 1.31 16 41 H 0.09 1.53 4.97 -2.39 -0.01 1.52 16 42 H 0.09 2.07 5.05 -2.39 -0.01 2.06 16 43 H 0.17 3.72 4.64 -2.91 -0.01 3.70 16 44 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 45 H 0.15 3.47 8.06 -2.91 -0.02 3.44 16 46 H 0.12 5.34 5.64 -2.91 -0.02 5.32 16 47 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 48 H 0.06 1.37 6.62 -2.39 -0.02 1.36 16 49 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -87.52 377.74 3.10 -84.42 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: 0.96 Total: 29.15 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 6.23 Total: -15.83 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -6.32 Total: -97.09 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: 0.21 Total: -47.27 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -87.52 3.10 -84.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837186393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.395 kcal (2) G-P(sol) polarization free energy of solvation -87.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds