Wall clock time and date at job start Tue Mar 31 2020 16:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47160 * 2 1 4 4 N 1.46907 * 109.46937 * 119.99651 * 2 1 3 5 5 C 1.48719 * 111.01403 * 59.48992 * 4 2 1 6 6 C 1.54377 * 104.51822 * 158.96786 * 5 4 2 7 7 C 1.54263 * 105.14804 * 336.26905 * 6 5 4 8 8 H 1.08996 * 110.32521 * 118.84449 * 7 6 5 9 9 N 1.46503 * 110.32139 * 240.95208 * 7 6 5 10 10 C 1.46494 * 120.00495 * 58.54758 * 9 7 6 11 11 C 1.34778 * 119.99770 * 238.54206 * 9 7 6 12 12 O 1.21591 * 119.99944 * 1.87411 * 11 9 7 13 13 C 1.47530 * 120.00222 * 181.87124 * 11 9 7 14 14 C 1.39669 * 120.19604 * 25.23880 * 13 11 9 15 15 C 1.37830 * 119.92091 * 179.79309 * 14 13 11 16 16 C 1.38575 * 120.31805 * 0.48813 * 15 14 13 17 17 C 1.38018 * 120.40564 * 359.74455 * 16 15 14 18 18 C 1.38836 * 120.07318 * 0.02562 * 17 16 15 19 19 O 1.35512 * 120.16188 * 179.97438 * 18 17 16 20 20 C 1.34815 * 117.00349 * 354.42083 * 19 18 17 21 21 H 1.07998 * 119.99850 * 5.05936 * 20 19 18 22 22 C 1.38698 * 120.00520 * 185.06659 * 20 19 18 23 23 N 1.31521 * 120.00492 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99722 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47112 * 90.00120 * 24 22 20 26 26 H 1.48501 * 109.46936 * 209.99835 * 24 22 20 27 27 H 1.48500 * 109.47084 * 330.00059 * 24 22 20 28 28 C 1.48554 * 110.99949 * 175.00110 * 4 2 1 29 29 H 1.09004 * 109.47565 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47187 * 300.00110 * 1 2 3 31 31 H 1.08999 * 109.47310 * 59.99952 * 1 2 3 32 32 H 1.08995 * 109.47555 * 239.99467 * 2 1 3 33 33 H 1.09005 * 109.46824 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.46803 * 299.99606 * 3 2 1 35 35 H 1.09001 * 109.46897 * 59.99901 * 3 2 1 36 36 H 1.09004 * 110.38832 * 40.24815 * 5 4 2 37 37 H 1.08999 * 110.51367 * 277.75263 * 5 4 2 38 38 H 1.09000 * 110.32548 * 217.32577 * 6 5 4 39 39 H 1.09001 * 110.32710 * 95.21528 * 6 5 4 40 40 H 1.09004 * 109.46897 * 84.08237 * 10 9 7 41 41 H 1.08997 * 109.47615 * 204.08310 * 10 9 7 42 42 H 1.09001 * 109.46921 * 324.08668 * 10 9 7 43 43 H 1.08005 * 120.03938 * 0.02606 * 14 13 11 44 44 H 1.07990 * 119.84014 * 180.20936 * 15 14 13 45 45 H 1.08009 * 119.79687 * 179.72031 * 16 15 14 46 46 H 1.08002 * 119.96430 * 180.02562 * 17 16 15 47 47 H 0.96997 * 120.00041 * 180.02562 * 23 22 20 48 48 H 1.09003 * 110.41592 * 82.18219 * 28 4 2 49 49 H 1.08997 * 110.41180 * 319.73651 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5328 -2.0971 1.2405 6 6 2.5153 -2.8197 2.1870 7 6 3.8078 -1.9787 2.1449 8 1 4.0401 -1.5916 3.1370 9 7 4.9226 -2.7841 1.6400 10 6 4.8410 -3.3971 0.3120 11 6 6.0234 -2.9610 2.3973 12 8 6.0774 -2.4806 3.5130 13 6 7.1628 -3.7374 1.8726 14 6 7.3660 -3.8429 0.4948 15 6 8.4349 -4.5662 0.0109 16 6 9.3046 -5.1987 0.8849 17 6 9.1136 -5.1073 2.2487 18 6 8.0451 -4.3791 2.7543 19 8 7.8556 -4.2885 4.0930 20 6 8.6702 -5.0222 4.8776 21 1 9.4830 -5.5816 4.4384 22 6 8.4645 -5.0589 6.2488 23 7 9.2589 -5.7751 7.0141 24 14 7.0589 -4.0911 7.0085 25 1 5.8411 -4.9396 7.0534 26 1 7.4282 -3.6819 8.3874 27 1 6.7902 -2.8824 6.1886 28 6 3.4996 -0.8178 1.1750 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.5683 -2.5405 0.2453 37 1 0.5197 -2.1388 1.6403 38 1 2.7100 -3.8312 1.8303 39 1 2.1142 -2.8469 3.2002 40 1 5.1423 -2.6705 -0.4427 41 1 5.5038 -4.2613 0.2693 42 1 3.8161 -3.7154 0.1211 43 1 6.6886 -3.3552 -0.1905 44 1 8.5927 -4.6441 -1.0545 45 1 10.1368 -5.7671 0.4964 46 1 9.7961 -5.6027 2.9234 47 1 9.1148 -5.8010 7.9729 48 1 3.9651 0.1036 1.5249 49 1 3.8439 -1.0608 0.1698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837186394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:48 Heat of formation + Delta-G solvation = 1.031813 kcal Electronic energy + Delta-G solvation = -29487.165833 eV Core-core repulsion = 25609.327326 eV Total energy + Delta-G solvation = -3877.838507 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.44157 -39.37778 -38.12197 -36.62343 -35.58317 -33.63737 -32.46557 -30.85091 -29.50763 -29.29528 -28.58883 -27.20109 -26.54902 -25.32819 -23.32251 -22.38133 -21.62889 -20.56547 -20.30356 -19.12012 -18.03285 -17.28023 -16.76486 -16.66109 -16.00434 -15.24800 -15.05952 -14.75449 -14.55200 -14.29729 -14.21796 -13.98129 -13.72972 -13.69317 -13.27724 -13.09632 -12.77008 -12.61055 -12.45465 -12.40667 -12.36589 -12.30391 -11.93135 -11.79963 -11.65000 -11.39299 -11.30819 -11.20290 -11.13363 -11.02506 -10.78082 -10.71825 -10.52019 -10.07170 -9.61742 -9.09039 -8.90684 -8.69607 -8.42363 -8.34140 -7.49020 -6.48223 -4.13732 1.58542 2.16106 3.13967 3.29440 3.34414 3.45264 3.64573 3.82279 4.33215 4.41627 4.45851 4.52412 4.69216 4.70589 4.88334 4.96215 5.04003 5.05355 5.07128 5.09978 5.20406 5.28772 5.37300 5.39235 5.41259 5.46123 5.54172 5.57387 5.61406 5.64907 5.66500 5.76014 5.80622 5.85048 5.89692 5.96751 6.04490 6.08764 6.14789 6.36061 6.47254 6.55735 6.80592 6.83938 6.88718 7.00564 7.14299 7.46535 7.63449 7.77051 7.93852 8.76643 8.87288 9.49489 10.57088 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.003539 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.787322 B = 7909.464111 C = 9414.101699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 C -0.144 4.144 4 N -0.505 5.505 5 C 0.036 3.964 6 C -0.137 4.137 7 C 0.140 3.860 8 H 0.111 0.889 9 N -0.617 5.617 10 C 0.064 3.936 11 C 0.567 3.433 12 O -0.517 6.517 13 C -0.225 4.225 14 C -0.061 4.061 15 C -0.223 4.223 16 C -0.051 4.051 17 C -0.227 4.227 18 C 0.202 3.798 19 O -0.173 6.173 20 C -0.396 4.396 21 H 0.109 0.891 22 C 0.072 3.928 23 N -0.870 5.870 24 Si 0.894 3.106 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.236 1.236 28 C 0.026 3.974 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.052 0.948 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.135 0.865 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.138 0.862 47 H 0.282 0.718 48 H 0.085 0.915 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.157 7.338 -17.374 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.202 4.202 4 N -0.230 5.230 5 C -0.092 4.092 6 C -0.176 4.176 7 C 0.036 3.964 8 H 0.129 0.871 9 N -0.352 5.352 10 C -0.078 4.078 11 C 0.358 3.642 12 O -0.393 6.393 13 C -0.229 4.229 14 C -0.079 4.079 15 C -0.242 4.242 16 C -0.070 4.070 17 C -0.246 4.246 18 C 0.145 3.855 19 O -0.073 6.073 20 C -0.471 4.471 21 H 0.126 0.874 22 C -0.133 4.133 23 N -0.506 5.506 24 Si 0.718 3.282 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.159 1.159 28 C -0.103 4.103 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.061 0.939 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.116 0.884 42 H 0.077 0.923 43 H 0.153 0.847 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.156 0.844 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -14.410 7.984 -15.886 22.886 hybrid contribution -0.065 -0.358 -0.460 0.587 sum -14.475 7.625 -16.346 23.127 Atomic orbital electron populations 1.21852 0.94210 1.01975 1.02203 1.21802 0.95833 0.95559 0.91031 1.21829 1.01190 0.95081 1.02108 1.65459 1.06198 1.14130 1.37199 1.23116 0.99471 0.88315 0.98307 1.22725 0.94776 0.99278 1.00835 1.21652 0.85531 0.89939 0.99316 0.87052 1.47717 1.17159 1.52551 1.17758 1.22379 1.02704 0.98751 0.83992 1.18298 0.81687 0.79751 0.84438 1.90830 1.80847 1.48775 1.18806 1.18766 1.00080 1.11309 0.92792 1.21539 0.96620 0.96487 0.93252 1.20578 0.98784 1.06090 0.98730 1.20978 0.97225 0.95901 0.92873 1.21271 1.01140 1.06333 0.95889 1.18998 0.91384 0.91234 0.83910 1.83723 1.53455 1.58121 1.12046 1.20898 1.10759 1.26349 0.89076 0.87414 1.24478 0.98006 0.95956 0.94885 1.69632 1.37127 1.37694 1.06102 0.86296 0.80976 0.82674 0.78260 1.20000 1.20935 1.15859 1.23439 0.88630 0.99350 0.98854 0.92674 0.91697 0.92318 0.94180 0.92606 0.92365 0.91682 0.93942 0.89981 0.90452 0.90217 0.92937 0.88399 0.92260 0.84736 0.87017 0.86889 0.84442 0.90811 0.89617 0.93212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 9.04 37.16 0.34 -0.72 16 2 C 0.07 0.57 2.45 -67.71 -0.17 0.41 16 3 C -0.14 -1.17 9.16 37.16 0.34 -0.83 16 4 N -0.50 -5.25 5.20 -221.88 -1.15 -6.40 16 5 C 0.04 0.34 5.33 -2.09 -0.01 0.33 16 6 C -0.14 -1.61 6.22 -25.35 -0.16 -1.76 16 7 C 0.14 1.96 3.46 -66.54 -0.23 1.73 16 8 H 0.11 1.89 6.96 -51.93 -0.36 1.53 16 9 N -0.62 -9.44 2.79 -173.58 -0.48 -9.92 16 10 C 0.06 0.72 7.54 59.84 0.45 1.18 16 11 C 0.57 11.59 7.43 -12.47 -0.09 11.50 16 12 O -0.52 -12.90 14.96 -14.75 -0.22 -13.12 16 13 C -0.22 -4.56 5.55 -104.81 -0.58 -5.14 16 14 C -0.06 -0.96 7.50 -39.20 -0.29 -1.26 16 15 C -0.22 -3.39 10.03 -39.61 -0.40 -3.79 16 16 C -0.05 -0.87 10.03 -39.54 -0.40 -1.26 16 17 C -0.23 -4.78 9.16 -39.44 -0.36 -5.14 16 18 C 0.20 4.76 6.63 -38.60 -0.26 4.51 16 19 O -0.17 -4.76 6.98 -19.22 -0.13 -4.89 16 20 C -0.40 -11.33 9.95 30.90 0.31 -11.02 16 21 H 0.11 3.07 5.44 -52.49 -0.29 2.78 16 22 C 0.07 2.08 5.49 -17.51 -0.10 1.98 16 23 N -0.87 -25.31 13.96 55.48 0.77 -24.54 16 24 Si 0.89 23.02 28.62 -169.99 -4.86 18.15 16 25 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.24 -6.46 7.11 56.52 0.40 -6.06 16 28 C 0.03 0.30 5.15 -2.18 -0.01 0.29 16 29 H 0.05 0.39 6.93 -51.93 -0.36 0.03 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.04 0.35 7.97 -51.93 -0.41 -0.07 16 33 H 0.05 0.48 7.08 -51.93 -0.37 0.11 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.04 0.37 7.98 -51.93 -0.41 -0.04 16 37 H 0.08 0.73 7.68 -51.93 -0.40 0.33 16 38 H 0.08 0.90 6.88 -51.93 -0.36 0.54 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.50 6.80 -51.93 -0.35 0.14 16 41 H 0.10 1.17 4.81 -51.93 -0.25 0.92 16 42 H 0.06 0.56 6.76 -51.93 -0.35 0.21 16 43 H 0.14 1.66 4.38 -52.48 -0.23 1.43 16 44 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 45 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 46 H 0.14 3.01 5.64 -52.49 -0.30 2.71 16 47 H 0.28 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.09 1.04 7.70 -51.93 -0.40 0.64 16 49 H 0.05 0.54 6.49 -51.93 -0.34 0.20 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -32.46 378.59 -9.26 -41.73 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.27 Total: 2.28 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -1.62 Total: -8.99 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.86 Total: -40.86 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.35 Total: -18.01 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.86 Total: 18.15 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.46 -9.26 -41.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837186394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.758 kcal (2) G-P(sol) polarization free energy of solvation -32.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds