Wall clock time and date at job start Tue Mar 31 2020 16:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47160 * 2 1 4 4 N 1.46907 * 109.46937 * 119.99651 * 2 1 3 5 5 C 1.48719 * 111.01403 * 59.48992 * 4 2 1 6 6 C 1.54377 * 104.51822 * 158.96786 * 5 4 2 7 7 C 1.54263 * 105.14804 * 336.26905 * 6 5 4 8 8 H 1.08996 * 110.32521 * 118.84449 * 7 6 5 9 9 N 1.46503 * 110.32139 * 240.95208 * 7 6 5 10 10 C 1.46494 * 120.00495 * 58.54758 * 9 7 6 11 11 C 1.34778 * 119.99770 * 238.54206 * 9 7 6 12 12 O 1.21591 * 119.99944 * 1.87411 * 11 9 7 13 13 C 1.47530 * 120.00222 * 181.87124 * 11 9 7 14 14 C 1.39669 * 120.19604 * 25.23880 * 13 11 9 15 15 C 1.37830 * 119.92091 * 179.79309 * 14 13 11 16 16 C 1.38575 * 120.31805 * 0.48813 * 15 14 13 17 17 C 1.38018 * 120.40564 * 359.74455 * 16 15 14 18 18 C 1.38836 * 120.07318 * 0.02562 * 17 16 15 19 19 O 1.35512 * 120.16188 * 179.97438 * 18 17 16 20 20 C 1.34815 * 117.00349 * 354.42083 * 19 18 17 21 21 H 1.07998 * 119.99850 * 5.05936 * 20 19 18 22 22 C 1.38698 * 120.00520 * 185.06659 * 20 19 18 23 23 N 1.31521 * 120.00492 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99722 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.47112 * 90.00120 * 24 22 20 26 26 H 1.48501 * 109.46936 * 209.99835 * 24 22 20 27 27 H 1.48500 * 109.47084 * 330.00059 * 24 22 20 28 28 C 1.48554 * 110.99949 * 175.00110 * 4 2 1 29 29 H 1.09004 * 109.47565 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.47187 * 300.00110 * 1 2 3 31 31 H 1.08999 * 109.47310 * 59.99952 * 1 2 3 32 32 H 1.08995 * 109.47555 * 239.99467 * 2 1 3 33 33 H 1.09005 * 109.46824 * 179.97438 * 3 2 1 34 34 H 1.08991 * 109.46803 * 299.99606 * 3 2 1 35 35 H 1.09001 * 109.46897 * 59.99901 * 3 2 1 36 36 H 1.09004 * 110.38832 * 40.24815 * 5 4 2 37 37 H 1.08999 * 110.51367 * 277.75263 * 5 4 2 38 38 H 1.09000 * 110.32548 * 217.32577 * 6 5 4 39 39 H 1.09001 * 110.32710 * 95.21528 * 6 5 4 40 40 H 1.09004 * 109.46897 * 84.08237 * 10 9 7 41 41 H 1.08997 * 109.47615 * 204.08310 * 10 9 7 42 42 H 1.09001 * 109.46921 * 324.08668 * 10 9 7 43 43 H 1.08005 * 120.03938 * 0.02606 * 14 13 11 44 44 H 1.07990 * 119.84014 * 180.20936 * 15 14 13 45 45 H 1.08009 * 119.79687 * 179.72031 * 16 15 14 46 46 H 1.08002 * 119.96430 * 180.02562 * 17 16 15 47 47 H 0.96997 * 120.00041 * 180.02562 * 23 22 20 48 48 H 1.09003 * 110.41592 * 82.18219 * 28 4 2 49 49 H 1.08997 * 110.41180 * 319.73651 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.5328 -2.0971 1.2405 6 6 2.5153 -2.8197 2.1870 7 6 3.8078 -1.9787 2.1449 8 1 4.0401 -1.5916 3.1370 9 7 4.9226 -2.7841 1.6400 10 6 4.8410 -3.3971 0.3120 11 6 6.0234 -2.9610 2.3973 12 8 6.0774 -2.4806 3.5130 13 6 7.1628 -3.7374 1.8726 14 6 7.3660 -3.8429 0.4948 15 6 8.4349 -4.5662 0.0109 16 6 9.3046 -5.1987 0.8849 17 6 9.1136 -5.1073 2.2487 18 6 8.0451 -4.3791 2.7543 19 8 7.8556 -4.2885 4.0930 20 6 8.6702 -5.0222 4.8776 21 1 9.4830 -5.5816 4.4384 22 6 8.4645 -5.0589 6.2488 23 7 9.2589 -5.7751 7.0141 24 14 7.0589 -4.0911 7.0085 25 1 5.8411 -4.9396 7.0534 26 1 7.4282 -3.6819 8.3874 27 1 6.7902 -2.8824 6.1886 28 6 3.4996 -0.8178 1.1750 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.5683 -2.5405 0.2453 37 1 0.5197 -2.1388 1.6403 38 1 2.7100 -3.8312 1.8303 39 1 2.1142 -2.8469 3.2002 40 1 5.1423 -2.6705 -0.4427 41 1 5.5038 -4.2613 0.2693 42 1 3.8161 -3.7154 0.1211 43 1 6.6886 -3.3552 -0.1905 44 1 8.5927 -4.6441 -1.0545 45 1 10.1368 -5.7671 0.4964 46 1 9.7961 -5.6027 2.9234 47 1 9.1148 -5.8010 7.9729 48 1 3.9651 0.1036 1.5249 49 1 3.8439 -1.0608 0.1698 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837186394.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:47 Heat of formation + Delta-G solvation = -20.367818 kcal Electronic energy + Delta-G solvation = -29488.093791 eV Core-core repulsion = 25609.327326 eV Total energy + Delta-G solvation = -3878.766465 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80028 -40.68190 -39.51634 -38.24031 -36.78180 -34.64862 -34.52582 -32.18980 -30.88403 -30.32675 -29.58957 -28.08388 -27.55371 -27.24815 -24.65768 -23.37303 -23.09252 -21.85864 -21.03176 -20.39590 -19.94389 -18.88946 -18.23098 -17.63801 -17.16040 -16.64242 -16.56091 -16.00390 -15.79227 -15.69512 -15.44355 -15.35036 -15.16815 -15.02772 -14.39477 -14.37834 -14.16556 -14.08816 -13.71430 -13.59709 -13.38662 -13.16588 -13.05553 -12.96304 -12.79095 -12.67583 -12.58685 -12.51451 -12.18217 -12.11743 -11.91519 -11.83967 -11.75986 -11.66015 -11.48879 -10.98732 -10.68528 -9.84477 -9.67220 -9.44946 -9.13559 -8.60140 -6.28962 0.07743 0.63294 1.21496 1.24516 1.54548 1.86824 1.97920 2.25963 2.71920 2.99822 3.02035 3.10606 3.48685 3.63113 3.77875 3.96535 4.00171 4.12221 4.12942 4.18845 4.24075 4.29708 4.35276 4.44006 4.52896 4.54157 4.55364 4.62871 4.73646 4.79190 4.82536 4.84998 4.91653 4.96181 4.99818 5.01696 5.02294 5.06870 5.11390 5.28308 5.29846 5.40312 5.47042 5.52485 5.62300 5.68003 5.82622 5.89756 6.12042 6.15490 6.37473 6.76670 7.27268 7.56442 8.50607 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.003539 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.787322 B = 7909.464111 C = 9414.101699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.065 3.935 3 C -0.143 4.143 4 N -0.519 5.519 5 C 0.046 3.954 6 C -0.133 4.133 7 C 0.132 3.868 8 H 0.067 0.933 9 N -0.604 5.604 10 C 0.052 3.948 11 C 0.556 3.444 12 O -0.578 6.578 13 C -0.231 4.231 14 C -0.048 4.048 15 C -0.189 4.189 16 C -0.043 4.043 17 C -0.251 4.251 18 C 0.161 3.839 19 O -0.218 6.218 20 C -0.402 4.402 21 H 0.093 0.907 22 C 0.027 3.973 23 N -0.911 5.911 24 Si 0.949 3.051 25 H -0.272 1.272 26 H -0.263 1.263 27 H -0.270 1.270 28 C 0.040 3.960 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.182 0.818 44 H 0.169 0.831 45 H 0.151 0.849 46 H 0.114 0.886 47 H 0.286 0.714 48 H 0.072 0.928 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.113 7.716 -23.099 29.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.043 4.043 3 C -0.201 4.201 4 N -0.244 5.244 5 C -0.082 4.082 6 C -0.172 4.172 7 C 0.028 3.972 8 H 0.086 0.914 9 N -0.337 5.337 10 C -0.088 4.088 11 C 0.347 3.653 12 O -0.458 6.458 13 C -0.235 4.235 14 C -0.066 4.066 15 C -0.207 4.207 16 C -0.061 4.061 17 C -0.270 4.270 18 C 0.108 3.892 19 O -0.123 6.123 20 C -0.478 4.478 21 H 0.110 0.890 22 C -0.173 4.173 23 N -0.551 5.551 24 Si 0.773 3.227 25 H -0.197 1.197 26 H -0.188 1.188 27 H -0.194 1.194 28 C -0.089 4.089 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.199 0.801 44 H 0.187 0.813 45 H 0.168 0.832 46 H 0.132 0.868 47 H 0.096 0.904 48 H 0.090 0.910 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.406 8.356 -21.705 28.462 hybrid contribution 0.472 -0.416 0.788 1.008 sum -15.933 7.940 -20.918 27.468 Atomic orbital electron populations 1.21832 0.93150 1.02406 1.02509 1.21896 0.96633 0.95394 0.90367 1.21829 1.00702 0.95135 1.02441 1.65456 1.05233 1.14877 1.38860 1.23086 0.98992 0.87518 0.98605 1.22678 0.94031 0.99419 1.01096 1.21704 0.85939 0.91358 0.98188 0.91428 1.47725 1.15648 1.51594 1.18697 1.22718 1.04783 0.99284 0.82059 1.18561 0.83081 0.79472 0.84171 1.90809 1.82164 1.51327 1.21520 1.19186 0.99489 1.10369 0.94495 1.22129 0.97320 0.95702 0.91455 1.21289 0.96104 1.02092 1.01188 1.21457 0.98426 0.95320 0.90921 1.21314 1.00667 1.07076 0.97958 1.19739 0.93227 0.92950 0.83292 1.83712 1.54492 1.60221 1.13841 1.20874 1.10760 1.26464 0.89663 0.88982 1.25007 0.99809 0.97120 0.95363 1.69674 1.38873 1.40086 1.06461 0.85512 0.79192 0.80203 0.77829 1.19693 1.18765 1.19440 1.23230 0.89672 0.97356 0.98605 0.92168 0.92663 0.90798 0.93112 0.93343 0.90646 0.92778 0.91841 0.89028 0.89939 0.91512 0.89450 0.88626 0.89513 0.80080 0.81346 0.83161 0.86811 0.90417 0.90950 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.04 71.98 0.65 -0.95 16 2 C 0.07 0.90 2.45 44.91 0.11 1.01 16 3 C -0.14 -1.98 9.16 71.98 0.66 -1.32 16 4 N -0.52 -9.58 5.20 -855.91 -4.45 -14.03 16 5 C 0.05 0.73 5.33 86.42 0.46 1.19 16 6 C -0.13 -2.96 6.22 31.49 0.20 -2.76 16 7 C 0.13 3.67 3.46 45.89 0.16 3.83 16 8 H 0.07 2.48 6.96 -2.39 -0.02 2.47 16 9 N -0.60 -17.60 2.79 -821.34 -2.29 -19.90 16 10 C 0.05 0.91 7.54 127.77 0.96 1.88 16 11 C 0.56 23.16 7.43 86.69 0.64 23.81 16 12 O -0.58 -30.91 14.96 15.15 0.23 -30.68 16 13 C -0.23 -9.23 5.55 -19.99 -0.11 -9.34 16 14 C -0.05 -1.30 7.50 22.52 0.17 -1.13 16 15 C -0.19 -4.55 10.03 22.25 0.22 -4.32 16 16 C -0.04 -1.31 10.03 22.30 0.22 -1.08 16 17 C -0.25 -10.76 9.16 22.36 0.20 -10.55 16 18 C 0.16 7.88 6.63 22.91 0.15 8.03 16 19 O -0.22 -12.93 6.98 -0.82 -0.01 -12.93 16 20 C -0.40 -24.85 9.95 67.93 0.68 -24.17 16 21 H 0.09 5.75 5.44 -2.91 -0.02 5.73 16 22 C 0.03 1.67 5.49 84.85 0.47 2.14 16 23 N -0.91 -56.26 13.96 21.62 0.30 -55.95 16 24 Si 0.95 51.27 28.62 68.60 1.96 53.24 16 25 H -0.27 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.26 -13.04 7.11 99.48 0.71 -12.34 16 27 H -0.27 -15.95 7.11 99.48 0.71 -15.24 16 28 C 0.04 0.85 5.15 86.45 0.45 1.30 16 29 H 0.06 0.62 6.93 -2.39 -0.02 0.61 16 30 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.62 7.97 -2.39 -0.02 0.61 16 33 H 0.05 0.73 7.08 -2.38 -0.02 0.71 16 34 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 0.79 7.98 -2.39 -0.02 0.77 16 37 H 0.09 1.35 7.68 -2.39 -0.02 1.33 16 38 H 0.08 1.73 6.88 -2.39 -0.02 1.71 16 39 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 1.02 6.80 -2.38 -0.02 1.01 16 41 H 0.10 1.77 4.81 -2.39 -0.01 1.76 16 42 H 0.09 1.14 6.76 -2.39 -0.02 1.13 16 43 H 0.18 3.20 4.38 -2.91 -0.01 3.19 16 44 H 0.17 2.42 8.06 -2.92 -0.02 2.40 16 45 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 46 H 0.11 5.35 5.64 -2.91 -0.02 5.34 16 47 H 0.29 16.26 8.31 -92.71 -0.77 15.49 16 48 H 0.07 1.73 7.70 -2.39 -0.02 1.71 16 49 H 0.07 1.18 6.49 -2.39 -0.02 1.16 16 Total: -1.00 -81.69 378.59 3.00 -78.69 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.96 Total: 14.00 kcal Atomic # 6 Polarization: -18.73 SS G_CDS: 6.29 Total: -12.44 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -6.44 Total: -89.88 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: 0.22 Total: -43.61 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 1.96 Total: 53.24 kcal Total: -81.69 3.00 -78.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837186394.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.327 kcal (2) G-P(sol) polarization free energy of solvation -81.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds