Wall clock time and date at job start Tue Mar 31 2020 16:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 N 1.46896 * 109.47034 * 179.97438 * 3 2 1 5 5 C 1.48526 * 111.00176 * 307.39293 * 4 3 2 6 6 C 1.55199 * 103.24014 * 200.26029 * 5 4 3 7 7 C 1.54594 * 102.80180 * 37.43325 * 6 5 4 8 8 H 1.08999 * 110.31133 * 219.05222 * 7 6 5 9 9 N 1.46498 * 110.30682 * 96.98101 * 7 6 5 10 10 C 1.34774 * 119.99590 * 87.79427 * 9 7 6 11 11 O 1.21280 * 120.00253 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99715 * 179.72303 * 10 9 7 13 13 C 1.50701 * 109.46980 * 179.97438 * 12 10 9 14 14 C 1.38326 * 119.96521 * 269.72164 * 13 12 10 15 15 C 1.38284 * 120.13448 * 179.76576 * 14 13 12 16 16 C 1.38119 * 120.06875 * 0.51453 * 15 14 13 17 17 C 1.38851 * 119.93566 * 359.73979 * 16 15 14 18 18 O 1.35744 * 120.07421 * 179.97438 * 17 16 15 19 19 C 1.34836 * 116.99888 * 354.49336 * 18 17 16 20 20 H 1.08005 * 119.99870 * 5.05775 * 19 18 17 21 21 C 1.38646 * 120.00005 * 185.05713 * 19 18 17 22 22 N 1.31562 * 120.00208 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46885 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47312 * 119.99962 * 23 21 19 26 26 H 1.48498 * 109.47464 * 240.00210 * 23 21 19 27 27 C 1.38080 * 119.96584 * 89.99830 * 13 12 10 28 28 C 1.47903 * 110.99917 * 189.99779 * 4 3 2 29 29 H 1.08994 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47082 * 300.00101 * 1 2 3 31 31 H 1.09002 * 109.46841 * 60.00295 * 1 2 3 32 32 H 1.08994 * 109.47082 * 239.99899 * 2 1 3 33 33 H 1.09002 * 109.46841 * 119.99705 * 2 1 3 34 34 H 1.09003 * 109.47151 * 59.99875 * 3 2 1 35 35 H 1.09002 * 109.47028 * 299.99590 * 3 2 1 36 36 H 1.09005 * 110.66887 * 318.71816 * 5 4 3 37 37 H 1.09000 * 110.66567 * 81.67778 * 5 4 3 38 38 H 1.09002 * 110.75633 * 279.12211 * 6 5 4 39 39 H 1.08996 * 110.80078 * 155.76273 * 6 5 4 40 40 H 0.96997 * 120.00316 * 267.78998 * 9 7 6 41 41 H 1.08997 * 109.47064 * 299.99790 * 12 10 9 42 42 H 1.09004 * 109.47225 * 60.00053 * 12 10 9 43 43 H 1.07995 * 119.93271 * 0.02562 * 14 13 12 44 44 H 1.08003 * 119.96194 * 180.25552 * 15 14 13 45 45 H 1.08004 * 120.02995 * 179.72331 * 16 15 14 46 46 H 0.97000 * 120.00069 * 180.02562 * 22 21 19 47 47 H 1.07999 * 120.03210 * 0.02562 * 27 13 12 48 48 H 1.09002 * 109.91676 * 26.49220 * 28 4 3 49 49 H 1.09000 * 110.08428 * 265.29266 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0408 0.6006 1.1026 6 6 5.4913 1.1232 1.2809 7 6 5.3378 2.6444 1.0524 8 1 6.1865 3.0296 0.4872 9 7 5.2234 3.3423 2.3354 10 6 6.3336 3.7465 2.9839 11 8 7.4273 3.5321 2.5055 12 6 6.2157 4.4700 4.3007 13 6 7.5920 4.8088 4.8126 14 6 8.2632 3.9187 5.6315 15 6 9.5282 4.2240 6.0993 16 6 10.1211 5.4240 5.7585 17 6 9.4479 6.3219 4.9409 18 8 10.0278 7.5023 4.6046 19 6 11.2082 7.7926 5.1881 20 1 11.6896 7.0646 5.8243 21 6 11.8040 9.0256 4.9713 22 7 11.2174 9.9126 4.1968 23 14 13.4390 9.4281 5.7802 24 1 13.8853 8.2709 6.5969 25 1 14.4522 9.7144 4.7330 26 1 13.2795 10.6186 6.6534 27 6 8.1795 6.0101 4.4683 28 6 4.0389 2.8024 0.2404 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.4629 0.7504 2.0146 37 1 4.0410 -0.4514 0.8173 38 1 6.1540 0.6858 0.5342 39 1 5.8552 0.9192 2.2879 40 1 4.3488 3.5135 2.7181 41 1 5.6435 5.3871 4.1614 42 1 5.7073 3.8305 5.0223 43 1 7.8000 2.9816 5.9027 44 1 10.0513 3.5251 6.7352 45 1 11.1073 5.6637 6.1278 46 1 11.6344 10.7751 4.0448 47 1 7.6530 6.7068 3.8328 48 1 3.3155 3.3882 0.8074 49 1 4.2519 3.2938 -0.7089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856073504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:51 Heat of formation + Delta-G solvation = -40.084845 kcal Electronic energy + Delta-G solvation = -27529.979722 eV Core-core repulsion = 23650.358263 eV Total energy + Delta-G solvation = -3879.621459 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.32107 -39.19461 -38.49956 -36.45833 -35.37070 -33.42432 -32.35239 -31.95483 -30.54497 -29.25724 -28.82724 -26.95040 -25.54939 -25.13787 -22.74606 -21.85624 -21.46580 -21.14322 -20.43729 -19.99496 -17.64992 -17.15739 -16.92229 -16.61621 -16.29262 -15.72494 -15.28853 -14.96552 -14.77281 -14.36272 -14.26475 -14.22941 -13.84322 -13.65114 -13.44252 -13.34439 -13.12090 -12.67127 -12.57051 -12.38152 -12.34868 -12.12010 -11.77314 -11.72825 -11.67195 -11.47041 -11.38115 -11.23862 -11.12096 -11.04215 -10.80004 -10.72556 -10.56966 -10.39257 -9.72205 -9.28228 -9.15497 -8.83159 -8.79061 -8.01160 -7.16311 -6.39348 -3.98276 2.14062 2.44502 2.77238 3.10428 3.17121 3.17406 3.22837 3.63356 4.01115 4.17017 4.34831 4.54908 4.58956 4.63785 4.81133 4.86568 4.91268 4.93401 5.03856 5.12914 5.13381 5.15747 5.23648 5.27127 5.29454 5.35099 5.52068 5.53012 5.58800 5.62579 5.69826 5.73495 5.78810 5.80769 5.85116 5.85930 5.98174 6.22992 6.27942 6.39126 6.54827 6.62419 6.71182 6.97157 7.12855 7.31858 7.41620 7.44450 7.49743 7.88415 8.05991 8.32778 9.06608 9.77883 10.79062 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.028163 B = 0.001871 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.991032 B =14963.978998 C =15409.841119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.046 3.954 4 N -0.517 5.517 5 C 0.035 3.965 6 C -0.133 4.133 7 C 0.134 3.866 8 H 0.100 0.900 9 N -0.735 5.735 10 C 0.515 3.485 11 O -0.515 6.515 12 C -0.094 4.094 13 C -0.033 4.033 14 C -0.197 4.197 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.864 5.864 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.174 4.174 28 C 0.031 3.969 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.035 0.965 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.396 0.604 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.268 0.732 47 H 0.113 0.887 48 H 0.052 0.948 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.195 -17.680 -4.726 27.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.082 4.082 4 N -0.241 5.241 5 C -0.093 4.093 6 C -0.172 4.172 7 C 0.029 3.971 8 H 0.118 0.882 9 N -0.389 5.389 10 C 0.301 3.699 11 O -0.388 6.388 12 C -0.134 4.134 13 C -0.034 4.034 14 C -0.216 4.216 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.193 4.193 28 C -0.097 4.097 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.062 0.938 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.230 0.770 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.078 0.922 47 H 0.131 0.869 48 H 0.071 0.929 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.231 -17.593 -5.833 26.709 hybrid contribution 0.076 0.578 1.364 1.483 sum -19.155 -17.015 -4.470 26.008 Atomic orbital electron populations 1.21738 0.95469 1.01875 1.01858 1.21596 0.95732 0.96214 1.02754 1.22377 0.87400 0.97450 1.01005 1.64850 1.07844 1.08031 1.43361 1.23311 0.95008 0.98525 0.92453 1.22967 0.96311 0.94968 1.02935 1.21717 0.98471 0.92367 0.84558 0.88192 1.46220 1.09147 1.60854 1.22657 1.20781 0.84036 0.78554 0.86524 1.90767 1.26464 1.54434 1.67137 1.20594 0.97354 1.01279 0.94133 1.18651 0.93647 0.93964 0.97111 1.20340 0.96769 0.99598 1.04862 1.20677 0.94620 0.95768 0.98249 1.21173 1.02187 0.95994 1.05636 1.19277 0.91513 0.87049 0.92032 1.83977 1.34723 1.30444 1.59257 1.21369 0.95398 1.00902 1.28964 0.89075 1.25274 0.99681 0.94601 0.97022 1.70054 1.38455 1.06497 1.34981 0.85651 0.80199 0.78843 0.78745 1.19128 1.20196 1.20199 1.19942 0.94716 0.98236 1.06447 1.23169 0.95199 0.90951 1.00401 0.92475 0.92834 0.92566 0.91058 0.91882 0.94693 0.90525 0.93757 0.89852 0.89861 0.90393 0.77048 0.88289 0.88512 0.88006 0.87498 0.85619 0.92177 0.86864 0.92936 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.13 -0.71 5.59 -26.73 -0.15 -0.86 16 3 C 0.05 0.30 5.03 -3.83 -0.02 0.28 16 4 N -0.52 -4.07 5.40 -230.28 -1.24 -5.31 16 5 C 0.03 0.26 5.11 -1.76 -0.01 0.25 16 6 C -0.13 -1.24 6.80 -24.73 -0.17 -1.41 16 7 C 0.13 1.34 3.31 -66.57 -0.22 1.12 16 8 H 0.10 1.24 7.60 -51.93 -0.39 0.84 16 9 N -0.73 -7.34 5.07 -52.49 -0.27 -7.60 16 10 C 0.51 7.30 7.82 -10.98 -0.09 7.21 16 11 O -0.51 -9.93 15.71 5.56 0.09 -9.84 16 12 C -0.09 -1.23 5.83 -29.03 -0.17 -1.40 16 13 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 14 C -0.20 -3.59 9.70 -39.53 -0.38 -3.98 16 15 C -0.07 -1.46 10.04 -39.61 -0.40 -1.86 16 16 C -0.23 -5.28 9.17 -39.40 -0.36 -5.65 16 17 C 0.15 3.92 6.65 -39.11 -0.26 3.66 16 18 O -0.18 -5.33 9.76 0.05 0.00 -5.33 16 19 C -0.39 -11.23 9.49 30.88 0.29 -10.93 16 20 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.89 13.67 55.48 0.76 -25.13 16 23 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.31 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 C -0.17 -3.86 9.65 -39.39 -0.38 -4.24 16 28 C 0.03 0.25 6.47 -2.75 -0.02 0.23 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.36 6.79 -51.93 -0.35 0.01 16 34 H 0.03 0.22 7.81 -51.93 -0.41 -0.19 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.32 8.00 -51.93 -0.42 -0.10 16 37 H 0.08 0.59 7.65 -51.93 -0.40 0.19 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 0.80 8.05 -51.93 -0.42 0.38 16 40 H 0.40 2.77 8.31 -40.82 -0.34 2.43 16 41 H 0.10 1.12 8.08 -51.93 -0.42 0.70 16 42 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 43 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 45 H 0.13 2.86 5.64 -52.48 -0.30 2.57 16 46 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 48 H 0.05 0.36 7.04 -51.93 -0.37 0.00 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 398.65 15.07 6.01 6.01 Total: -1.00 -34.46 398.65 -10.05 -44.51 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -7.86 Total: 4.73 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.51 Total: -18.03 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: -0.75 Total: -38.05 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.09 Total: -15.17 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.46 -10.05 -44.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856073504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.430 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds