Wall clock time and date at job start Tue Mar 31 2020 16:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47110 * 2 1 4 4 N 1.46896 * 109.47034 * 179.97438 * 3 2 1 5 5 C 1.48526 * 111.00176 * 307.39293 * 4 3 2 6 6 C 1.55199 * 103.24014 * 200.26029 * 5 4 3 7 7 C 1.54594 * 102.80180 * 37.43325 * 6 5 4 8 8 H 1.08999 * 110.31133 * 219.05222 * 7 6 5 9 9 N 1.46498 * 110.30682 * 96.98101 * 7 6 5 10 10 C 1.34774 * 119.99590 * 87.79427 * 9 7 6 11 11 O 1.21280 * 120.00253 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99715 * 179.72303 * 10 9 7 13 13 C 1.50701 * 109.46980 * 179.97438 * 12 10 9 14 14 C 1.38326 * 119.96521 * 269.72164 * 13 12 10 15 15 C 1.38284 * 120.13448 * 179.76576 * 14 13 12 16 16 C 1.38119 * 120.06875 * 0.51453 * 15 14 13 17 17 C 1.38851 * 119.93566 * 359.73979 * 16 15 14 18 18 O 1.35744 * 120.07421 * 179.97438 * 17 16 15 19 19 C 1.34836 * 116.99888 * 354.49336 * 18 17 16 20 20 H 1.08005 * 119.99870 * 5.05775 * 19 18 17 21 21 C 1.38646 * 120.00005 * 185.05713 * 19 18 17 22 22 N 1.31562 * 120.00208 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00103 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46885 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47312 * 119.99962 * 23 21 19 26 26 H 1.48498 * 109.47464 * 240.00210 * 23 21 19 27 27 C 1.38080 * 119.96584 * 89.99830 * 13 12 10 28 28 C 1.47903 * 110.99917 * 189.99779 * 4 3 2 29 29 H 1.08994 * 109.46723 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47082 * 300.00101 * 1 2 3 31 31 H 1.09002 * 109.46841 * 60.00295 * 1 2 3 32 32 H 1.08994 * 109.47082 * 239.99899 * 2 1 3 33 33 H 1.09002 * 109.46841 * 119.99705 * 2 1 3 34 34 H 1.09003 * 109.47151 * 59.99875 * 3 2 1 35 35 H 1.09002 * 109.47028 * 299.99590 * 3 2 1 36 36 H 1.09005 * 110.66887 * 318.71816 * 5 4 3 37 37 H 1.09000 * 110.66567 * 81.67778 * 5 4 3 38 38 H 1.09002 * 110.75633 * 279.12211 * 6 5 4 39 39 H 1.08996 * 110.80078 * 155.76273 * 6 5 4 40 40 H 0.96997 * 120.00316 * 267.78998 * 9 7 6 41 41 H 1.08997 * 109.47064 * 299.99790 * 12 10 9 42 42 H 1.09004 * 109.47225 * 60.00053 * 12 10 9 43 43 H 1.07995 * 119.93271 * 0.02562 * 14 13 12 44 44 H 1.08003 * 119.96194 * 180.25552 * 15 14 13 45 45 H 1.08004 * 120.02995 * 179.72331 * 16 15 14 46 46 H 0.97000 * 120.00069 * 180.02562 * 22 21 19 47 47 H 1.07999 * 120.03210 * 0.02562 * 27 13 12 48 48 H 1.09002 * 109.91676 * 26.49220 * 28 4 3 49 49 H 1.09000 * 110.08428 * 265.29266 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5090 1.4425 0.0006 5 6 4.0408 0.6006 1.1026 6 6 5.4913 1.1232 1.2809 7 6 5.3378 2.6444 1.0524 8 1 6.1865 3.0296 0.4872 9 7 5.2234 3.3423 2.3354 10 6 6.3336 3.7465 2.9839 11 8 7.4273 3.5321 2.5055 12 6 6.2157 4.4700 4.3007 13 6 7.5920 4.8088 4.8126 14 6 8.2632 3.9187 5.6315 15 6 9.5282 4.2240 6.0993 16 6 10.1211 5.4240 5.7585 17 6 9.4479 6.3219 4.9409 18 8 10.0278 7.5023 4.6046 19 6 11.2082 7.7926 5.1881 20 1 11.6896 7.0646 5.8243 21 6 11.8040 9.0256 4.9713 22 7 11.2174 9.9126 4.1968 23 14 13.4390 9.4281 5.7802 24 1 13.8853 8.2709 6.5969 25 1 14.4522 9.7144 4.7330 26 1 13.2795 10.6186 6.6534 27 6 8.1795 6.0101 4.4683 28 6 4.0389 2.8024 0.2404 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9564 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.4629 0.7504 2.0146 37 1 4.0410 -0.4514 0.8173 38 1 6.1540 0.6858 0.5342 39 1 5.8552 0.9192 2.2879 40 1 4.3488 3.5135 2.7181 41 1 5.6435 5.3871 4.1614 42 1 5.7073 3.8305 5.0223 43 1 7.8000 2.9816 5.9027 44 1 10.0513 3.5251 6.7352 45 1 11.1073 5.6637 6.1278 46 1 11.6344 10.7751 4.0448 47 1 7.6530 6.7068 3.8328 48 1 3.3155 3.3882 0.8074 49 1 4.2519 3.2938 -0.7089 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856073504.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:50 Heat of formation + Delta-G solvation = -64.281073 kcal Electronic energy + Delta-G solvation = -27531.028950 eV Core-core repulsion = 23650.358263 eV Total energy + Delta-G solvation = -3880.670687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.34196 -40.66556 -39.66258 -38.16561 -36.13916 -34.36151 -34.20621 -33.37925 -31.28843 -30.85889 -29.74207 -28.21909 -27.23285 -26.08063 -23.47723 -23.25406 -22.90790 -21.85426 -21.66578 -20.85224 -19.50266 -18.80388 -18.11079 -17.50938 -17.01062 -16.77074 -16.56525 -16.31453 -16.09641 -15.76927 -15.62015 -15.45504 -14.96063 -14.80570 -14.60696 -14.35461 -14.26962 -14.01301 -13.73704 -13.60938 -13.14761 -13.03339 -12.98142 -12.80335 -12.66611 -12.50603 -12.43940 -12.31756 -12.26465 -12.21942 -12.08314 -12.00233 -11.65291 -11.53339 -11.20571 -10.94623 -10.80015 -10.10733 -9.63917 -9.40726 -8.97713 -8.47316 -6.15931 0.52125 0.75844 1.33851 1.42675 1.52723 1.67282 2.15560 2.18045 2.84315 3.02280 3.18843 3.44363 3.48921 3.68638 3.80522 4.01569 4.08970 4.10289 4.15213 4.20016 4.26809 4.31966 4.38337 4.44623 4.47333 4.57896 4.61052 4.64400 4.68685 4.73976 4.81238 4.84587 4.87867 5.00121 5.01212 5.08690 5.09621 5.13261 5.21618 5.31034 5.31566 5.40072 5.49009 5.65249 5.72973 5.75453 5.87660 6.02860 6.06661 6.23733 6.56327 6.97322 7.31094 7.78985 8.76469 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.028163 B = 0.001871 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.991032 B =14963.978998 C =15409.841119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C 0.046 3.954 4 N -0.528 5.528 5 C 0.044 3.956 6 C -0.130 4.130 7 C 0.132 3.868 8 H 0.069 0.931 9 N -0.711 5.711 10 C 0.516 3.484 11 O -0.576 6.576 12 C -0.091 4.091 13 C -0.026 4.026 14 C -0.180 4.180 15 C -0.074 4.074 16 C -0.247 4.247 17 C 0.111 3.889 18 O -0.235 6.235 19 C -0.414 4.414 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.021 2.979 24 H -0.252 1.252 25 H -0.269 1.269 26 H -0.266 1.266 27 C -0.193 4.193 28 C 0.039 3.961 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.043 0.957 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.415 0.585 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.117 0.883 46 H 0.272 0.728 47 H 0.106 0.894 48 H 0.069 0.931 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.378 -20.319 -3.167 30.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.082 4.082 4 N -0.253 5.253 5 C -0.084 4.084 6 C -0.170 4.170 7 C 0.026 3.974 8 H 0.087 0.913 9 N -0.365 5.365 10 C 0.304 3.696 11 O -0.454 6.454 12 C -0.130 4.130 13 C -0.027 4.027 14 C -0.199 4.199 15 C -0.092 4.092 16 C -0.266 4.266 17 C 0.061 3.939 18 O -0.142 6.142 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.840 3.160 24 H -0.175 1.175 25 H -0.194 1.194 26 H -0.191 1.191 27 C -0.212 4.212 28 C -0.090 4.090 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.253 0.747 41 H 0.139 0.861 42 H 0.162 0.838 43 H 0.165 0.835 44 H 0.163 0.837 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.124 0.876 48 H 0.088 0.912 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -21.508 -20.289 -4.263 29.874 hybrid contribution 0.501 1.115 0.851 1.489 sum -21.007 -19.175 -3.412 28.646 Atomic orbital electron populations 1.21719 0.94717 1.02210 1.02079 1.21560 0.96334 0.95631 1.02434 1.22416 0.86319 0.98033 1.01400 1.64851 1.08930 1.07792 1.43698 1.23254 0.93562 0.98679 0.92872 1.22897 0.97582 0.94319 1.02163 1.21702 0.98634 0.92717 0.84355 0.91257 1.45980 1.09114 1.59282 1.22123 1.20922 0.83928 0.78054 0.86728 1.90764 1.28825 1.57135 1.68667 1.20706 0.94550 1.03261 0.94475 1.19204 0.95860 0.91996 0.95591 1.20976 0.95903 1.00562 1.02413 1.21138 0.95337 0.94754 0.97991 1.21290 1.02138 0.97279 1.05927 1.19892 0.93145 0.86837 0.94048 1.83935 1.35736 1.32912 1.61631 1.21868 0.95881 1.01765 1.29492 0.88256 1.26616 1.04019 0.93986 0.97532 1.70199 1.40992 1.07319 1.37533 0.84505 0.74516 0.79120 0.77873 1.17537 1.19402 1.19050 1.20226 0.94099 1.00056 1.06814 1.23079 0.94346 0.91472 1.00080 0.92125 0.92474 0.92482 0.91845 0.91730 0.93872 0.90508 0.92581 0.89273 0.90807 0.91114 0.74722 0.86057 0.83830 0.83461 0.83724 0.86527 0.91866 0.87608 0.91249 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 71.98 0.71 -0.37 16 2 C -0.12 -1.11 5.59 30.60 0.17 -0.94 16 3 C 0.05 0.48 5.03 86.30 0.43 0.91 16 4 N -0.53 -7.20 5.40 -882.47 -4.76 -11.96 16 5 C 0.04 0.55 5.11 86.74 0.44 1.00 16 6 C -0.13 -2.27 6.80 31.89 0.22 -2.05 16 7 C 0.13 2.48 3.31 45.87 0.15 2.63 16 8 H 0.07 1.77 7.60 -2.39 -0.02 1.75 16 9 N -0.71 -12.38 5.07 -438.38 -2.22 -14.60 16 10 C 0.52 13.54 7.82 87.66 0.69 14.22 16 11 O -0.58 -22.06 15.71 -3.03 -0.05 -22.10 16 12 C -0.09 -2.05 5.83 29.10 0.17 -1.88 16 13 C -0.03 -0.91 4.37 -19.88 -0.09 -0.99 16 14 C -0.18 -5.93 9.70 22.30 0.22 -5.72 16 15 C -0.07 -2.74 10.04 22.25 0.22 -2.51 16 16 C -0.25 -11.56 9.17 22.39 0.21 -11.35 16 17 C 0.11 5.91 6.65 22.58 0.15 6.06 16 18 O -0.24 -14.94 9.76 -22.74 -0.22 -15.16 16 19 C -0.41 -25.23 9.49 67.92 0.64 -24.59 16 20 H 0.10 5.60 5.20 -2.91 -0.02 5.58 16 21 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 22 N -0.92 -58.32 13.67 21.61 0.30 -58.03 16 23 Si 1.02 44.37 29.55 68.60 2.03 46.40 16 24 H -0.25 -10.15 7.11 99.48 0.71 -9.45 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 C -0.19 -8.78 9.65 22.39 0.22 -8.56 16 28 C 0.04 0.54 6.47 86.45 0.56 1.10 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.57 6.79 -2.39 -0.02 0.55 16 34 H 0.04 0.39 7.81 -2.39 -0.02 0.37 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 0.60 8.00 -2.38 -0.02 0.58 16 37 H 0.09 1.05 7.65 -2.39 -0.02 1.04 16 38 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.33 8.05 -2.39 -0.02 1.31 16 40 H 0.42 4.12 8.31 -92.71 -0.77 3.35 16 41 H 0.12 2.28 8.08 -2.39 -0.02 2.27 16 42 H 0.14 1.98 8.08 -2.38 -0.02 1.96 16 43 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 44 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 45 H 0.12 5.52 5.64 -2.91 -0.02 5.51 16 46 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 47 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 48 H 0.07 0.74 7.04 -2.39 -0.02 0.72 16 49 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -82.80 398.65 0.83 -81.97 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.18 Total: 27.49 kcal Atomic # 6 Polarization: -39.60 SS G_CDS: 5.58 Total: -34.02 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -6.69 Total: -84.58 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.27 Total: -37.26 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -82.80 0.83 -81.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856073504.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.689 kcal (2) G-P(sol) polarization free energy of solvation -82.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds