Wall clock time and date at job start Tue Mar 31 2020 16:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 N 1.46908 * 109.46943 * 185.09636 * 3 2 1 5 5 C 1.47902 * 110.99741 * 184.51961 * 4 3 2 6 6 C 1.53998 * 107.05603 * 145.84128 * 5 4 3 7 7 C 1.54597 * 105.13832 * 358.77576 * 6 5 4 8 8 H 1.09001 * 110.72225 * 96.39903 * 7 6 5 9 9 N 1.46504 * 110.72166 * 219.68075 * 7 6 5 10 10 C 1.34775 * 120.00265 * 273.54379 * 9 7 6 11 11 O 1.21285 * 119.99842 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00257 * 179.97438 * 10 9 7 13 13 C 1.50700 * 109.47323 * 180.02562 * 12 10 9 14 14 C 1.38317 * 119.96846 * 269.72609 * 13 12 10 15 15 C 1.38281 * 120.14022 * 179.76221 * 14 13 12 16 16 C 1.38131 * 120.06591 * 0.51821 * 15 14 13 17 17 C 1.38856 * 119.92705 * 359.73539 * 16 15 14 18 18 O 1.35755 * 120.06479 * 179.97438 * 17 16 15 19 19 C 1.34833 * 116.99767 * 5.64239 * 18 17 16 20 20 H 1.07994 * 120.00039 * 354.93017 * 19 18 17 21 21 C 1.38655 * 119.99734 * 174.93169 * 19 18 17 22 22 N 1.31562 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00025 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47221 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47057 * 120.00241 * 23 21 19 26 26 H 1.48499 * 109.47000 * 239.99752 * 23 21 19 27 27 C 1.38077 * 119.95904 * 90.00431 * 13 12 10 28 28 C 1.48534 * 110.99816 * 301.91408 * 4 3 2 29 29 H 1.09000 * 109.46913 * 59.99686 * 1 2 3 30 30 H 1.08996 * 109.46960 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46452 * 300.00667 * 1 2 3 32 32 H 1.08998 * 109.47135 * 239.99610 * 2 1 3 33 33 H 1.09008 * 109.47181 * 119.99508 * 2 1 3 34 34 H 1.09002 * 109.47522 * 65.09653 * 3 2 1 35 35 H 1.08999 * 109.47298 * 305.08892 * 3 2 1 36 36 H 1.08996 * 109.91640 * 26.49250 * 5 4 3 37 37 H 1.08996 * 110.08278 * 265.28518 * 5 4 3 38 38 H 1.09004 * 110.30486 * 117.68741 * 6 5 4 39 39 H 1.08993 * 110.30922 * 239.85777 * 6 5 4 40 40 H 0.97002 * 119.99787 * 93.54839 * 9 7 6 41 41 H 1.08997 * 109.47315 * 300.00648 * 12 10 9 42 42 H 1.08999 * 109.46675 * 60.00604 * 12 10 9 43 43 H 1.07996 * 119.92891 * 0.02562 * 14 13 12 44 44 H 1.08000 * 119.96770 * 180.25659 * 15 14 13 45 45 H 1.08002 * 120.03489 * 179.76641 * 16 15 14 46 46 H 0.97006 * 120.00090 * 179.97438 * 22 21 19 47 47 H 1.07997 * 120.04064 * 0.02562 * 27 13 12 48 48 H 1.08998 * 110.67051 * 318.71627 * 28 4 3 49 49 H 1.09007 * 110.66484 * 81.68010 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5040 1.4442 -0.1230 5 6 4.0429 2.8176 -0.0183 6 6 5.4064 2.7149 0.6902 7 6 5.5860 1.2118 1.0042 8 1 6.1867 0.7262 0.2351 9 7 6.1872 1.0269 2.3274 10 6 7.5277 1.0403 2.4663 11 8 8.2363 1.2058 1.4960 12 6 8.1461 0.8507 3.8274 13 6 9.6474 0.9075 3.7094 14 6 10.3670 -0.2516 3.4820 15 6 11.7443 -0.2028 3.3683 16 6 12.4066 1.0030 3.4922 17 6 11.6874 2.1676 3.7258 18 8 12.3356 3.3541 3.8486 19 6 13.6640 3.3527 3.6178 20 1 14.1783 2.4219 3.4294 21 6 14.3697 4.5462 3.6223 22 7 13.7429 5.6801 3.8513 23 14 16.2102 4.5442 3.3032 24 1 16.6717 3.1512 3.0759 25 1 16.5052 5.3662 2.1021 26 1 16.9169 5.1138 4.4785 27 6 10.3036 2.1160 3.8343 28 6 4.1320 0.6773 0.9831 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5140 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.7532 1.9294 0.9321 35 1 1.6042 1.9820 -0.8409 36 1 3.3657 3.4385 0.5681 37 1 4.1723 3.2457 -1.0123 38 1 6.2023 3.0613 0.0309 39 1 5.3982 3.2957 1.6124 40 1 5.6205 0.8948 3.1034 41 1 7.8042 1.6414 4.4952 42 1 7.8494 -0.1181 4.2294 43 1 9.8518 -1.1961 3.3888 44 1 12.3030 -1.1090 3.1866 45 1 13.4826 1.0400 3.4071 46 1 14.2367 6.5151 3.8548 47 1 9.7416 3.0200 4.0167 48 1 3.6316 0.8861 1.9287 49 1 4.1153 -0.3913 0.7683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856073505.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:54 Heat of formation + Delta-G solvation = -41.414760 kcal Electronic energy + Delta-G solvation = -27503.793175 eV Core-core repulsion = 23624.114046 eV Total energy + Delta-G solvation = -3879.679129 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.21878 -39.18463 -38.50665 -36.44792 -35.31420 -33.63037 -32.34958 -31.95547 -30.36963 -29.24168 -28.83879 -26.92466 -25.58213 -25.14420 -22.52887 -21.82030 -21.49408 -20.97180 -20.61612 -20.03667 -17.65731 -17.14062 -16.93845 -16.62556 -16.34939 -15.45227 -15.23443 -14.89058 -14.82047 -14.40265 -14.31913 -14.20498 -13.68405 -13.54581 -13.47087 -13.31528 -13.22231 -12.97733 -12.60526 -12.36935 -12.29112 -12.13206 -11.85413 -11.72488 -11.58598 -11.45464 -11.29070 -11.23074 -11.07900 -10.86855 -10.79942 -10.70974 -10.55755 -10.38179 -9.71474 -9.27340 -9.12637 -8.83485 -8.78250 -8.00353 -7.15448 -6.38600 -3.97412 2.14774 2.45350 2.79455 3.05893 3.16648 3.18424 3.23525 3.70250 4.01911 4.21921 4.37051 4.57579 4.61339 4.64849 4.83478 4.87388 4.89624 4.96185 5.07144 5.08290 5.11746 5.22404 5.23288 5.30177 5.31070 5.36340 5.52079 5.54719 5.60203 5.64520 5.71392 5.73201 5.80633 5.83378 5.88197 5.96749 5.99482 6.23876 6.31243 6.39894 6.55376 6.62777 6.72165 6.97940 7.13747 7.32743 7.42866 7.47030 7.50603 7.89258 8.06766 8.35137 9.07440 9.78604 10.79853 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.001964 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.099144 B =14254.835406 C =15085.683652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.047 3.953 4 N -0.515 5.515 5 C 0.037 3.963 6 C -0.144 4.144 7 C 0.144 3.856 8 H 0.102 0.898 9 N -0.734 5.734 10 C 0.515 3.485 11 O -0.514 6.514 12 C -0.093 4.093 13 C -0.033 4.033 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.154 3.846 18 O -0.181 6.181 19 C -0.389 4.389 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.277 1.277 27 C -0.174 4.174 28 C 0.031 3.969 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.397 0.603 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.268 0.732 47 H 0.113 0.887 48 H 0.049 0.951 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.101 -10.666 -3.360 26.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.081 4.081 4 N -0.239 5.239 5 C -0.091 4.091 6 C -0.184 4.184 7 C 0.039 3.961 8 H 0.120 0.880 9 N -0.388 5.388 10 C 0.301 3.699 11 O -0.387 6.387 12 C -0.133 4.133 13 C -0.034 4.034 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.085 6.085 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.766 3.234 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.193 4.193 28 C -0.097 4.097 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.091 0.909 40 H 0.231 0.769 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.078 0.922 47 H 0.131 0.869 48 H 0.067 0.933 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -23.457 -10.285 -4.520 26.008 hybrid contribution 0.384 0.373 0.958 1.097 sum -23.072 -9.911 -3.562 25.362 Atomic orbital electron populations 1.21736 0.95483 1.01881 1.01814 1.21567 0.95695 0.96175 1.02760 1.22368 0.87569 0.97551 1.00632 1.64759 1.05574 1.10975 1.42622 1.22861 0.95240 0.89871 1.01081 1.22854 0.97184 0.97021 1.01313 1.21744 0.93115 0.95338 0.85942 0.88022 1.46027 1.07052 1.76022 1.09660 1.20778 0.81473 0.75943 0.91680 1.90772 1.60887 1.46397 1.40651 1.20590 0.94030 1.04230 0.94476 1.18654 0.91893 0.93211 0.99629 1.20346 0.94042 0.96655 1.10489 1.20682 0.94036 0.96644 0.97953 1.21179 1.00615 0.92493 1.10717 1.19276 0.91589 0.86601 0.92432 1.83975 1.22738 1.25626 1.76116 1.21365 0.80185 0.95009 1.50031 0.89078 1.25276 1.00391 0.94143 0.96784 1.70056 1.36310 0.97886 1.45766 0.85652 0.80738 0.78789 0.78264 1.19124 1.20189 1.20219 1.19934 0.91784 0.97060 1.10527 1.23424 0.93380 0.99580 0.93346 0.92575 0.92453 0.92872 0.90908 0.92032 0.94695 0.90459 0.93605 0.89942 0.90019 0.90882 0.76869 0.88321 0.88399 0.87948 0.87486 0.85625 0.92193 0.86891 0.93251 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.12 -0.73 5.61 -26.73 -0.15 -0.88 16 3 C 0.05 0.32 4.85 -3.82 -0.02 0.30 16 4 N -0.52 -4.34 5.35 -230.45 -1.23 -5.57 16 5 C 0.04 0.32 6.70 -2.75 -0.02 0.30 16 6 C -0.14 -1.50 6.67 -25.37 -0.17 -1.66 16 7 C 0.14 1.49 3.34 -66.07 -0.22 1.27 16 8 H 0.10 1.30 7.71 -51.93 -0.40 0.90 16 9 N -0.73 -7.40 5.14 -52.01 -0.27 -7.67 16 10 C 0.51 7.38 7.82 -10.99 -0.09 7.30 16 11 O -0.51 -10.06 15.77 5.55 0.09 -9.98 16 12 C -0.09 -1.23 5.83 -29.04 -0.17 -1.40 16 13 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 14 C -0.20 -3.60 9.70 -39.54 -0.38 -3.98 16 15 C -0.07 -1.47 10.04 -39.60 -0.40 -1.86 16 16 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 17 C 0.15 3.92 6.65 -39.11 -0.26 3.66 16 18 O -0.18 -5.35 9.76 0.03 0.00 -5.35 16 19 C -0.39 -11.25 9.49 30.89 0.29 -10.95 16 20 H 0.09 2.45 5.20 -52.49 -0.27 2.17 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.97 13.67 55.48 0.76 -25.21 16 23 Si 0.94 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 C -0.17 -3.86 9.65 -39.39 -0.38 -4.24 16 28 C 0.03 0.24 4.96 -1.90 -0.01 0.23 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.36 7.17 -51.92 -0.37 -0.02 16 34 H 0.03 0.23 7.97 -51.93 -0.41 -0.18 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 40 H 0.40 2.68 8.53 -40.82 -0.35 2.34 16 41 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 42 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 45 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 46 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.11 2.43 8.06 -52.49 -0.42 2.01 16 48 H 0.05 0.33 7.89 -51.93 -0.41 -0.08 16 49 H 0.09 0.66 7.76 -51.93 -0.40 0.26 16 LS Contribution 400.01 15.07 6.03 6.03 Total: -1.00 -34.77 400.01 -10.10 -44.87 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -7.93 Total: 4.85 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.52 Total: -18.05 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.74 Total: -38.45 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: 0.09 Total: -15.32 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.77 -10.10 -44.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856073505.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.451 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds