Wall clock time and date at job start Tue Mar 31 2020 16:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47186 * 2 1 4 4 N 1.46908 * 109.46943 * 185.09636 * 3 2 1 5 5 C 1.47902 * 110.99741 * 184.51961 * 4 3 2 6 6 C 1.53998 * 107.05603 * 145.84128 * 5 4 3 7 7 C 1.54597 * 105.13832 * 358.77576 * 6 5 4 8 8 H 1.09001 * 110.72225 * 96.39903 * 7 6 5 9 9 N 1.46504 * 110.72166 * 219.68075 * 7 6 5 10 10 C 1.34775 * 120.00265 * 273.54379 * 9 7 6 11 11 O 1.21285 * 119.99842 * 0.02562 * 10 9 7 12 12 C 1.50695 * 120.00257 * 179.97438 * 10 9 7 13 13 C 1.50700 * 109.47323 * 180.02562 * 12 10 9 14 14 C 1.38317 * 119.96846 * 269.72609 * 13 12 10 15 15 C 1.38281 * 120.14022 * 179.76221 * 14 13 12 16 16 C 1.38131 * 120.06591 * 0.51821 * 15 14 13 17 17 C 1.38856 * 119.92705 * 359.73539 * 16 15 14 18 18 O 1.35755 * 120.06479 * 179.97438 * 17 16 15 19 19 C 1.34833 * 116.99767 * 5.64239 * 18 17 16 20 20 H 1.07994 * 120.00039 * 354.93017 * 19 18 17 21 21 C 1.38655 * 119.99734 * 174.93169 * 19 18 17 22 22 N 1.31562 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00025 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47221 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47057 * 120.00241 * 23 21 19 26 26 H 1.48499 * 109.47000 * 239.99752 * 23 21 19 27 27 C 1.38077 * 119.95904 * 90.00431 * 13 12 10 28 28 C 1.48534 * 110.99816 * 301.91408 * 4 3 2 29 29 H 1.09000 * 109.46913 * 59.99686 * 1 2 3 30 30 H 1.08996 * 109.46960 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46452 * 300.00667 * 1 2 3 32 32 H 1.08998 * 109.47135 * 239.99610 * 2 1 3 33 33 H 1.09008 * 109.47181 * 119.99508 * 2 1 3 34 34 H 1.09002 * 109.47522 * 65.09653 * 3 2 1 35 35 H 1.08999 * 109.47298 * 305.08892 * 3 2 1 36 36 H 1.08996 * 109.91640 * 26.49250 * 5 4 3 37 37 H 1.08996 * 110.08278 * 265.28518 * 5 4 3 38 38 H 1.09004 * 110.30486 * 117.68741 * 6 5 4 39 39 H 1.08993 * 110.30922 * 239.85777 * 6 5 4 40 40 H 0.97002 * 119.99787 * 93.54839 * 9 7 6 41 41 H 1.08997 * 109.47315 * 300.00648 * 12 10 9 42 42 H 1.08999 * 109.46675 * 60.00604 * 12 10 9 43 43 H 1.07996 * 119.92891 * 0.02562 * 14 13 12 44 44 H 1.08000 * 119.96770 * 180.25659 * 15 14 13 45 45 H 1.08002 * 120.03489 * 179.76641 * 16 15 14 46 46 H 0.97006 * 120.00090 * 179.97438 * 22 21 19 47 47 H 1.07997 * 120.04064 * 0.02562 * 27 13 12 48 48 H 1.08998 * 110.67051 * 318.71627 * 28 4 3 49 49 H 1.09007 * 110.66484 * 81.68010 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5040 1.4442 -0.1230 5 6 4.0429 2.8176 -0.0183 6 6 5.4064 2.7149 0.6902 7 6 5.5860 1.2118 1.0042 8 1 6.1867 0.7262 0.2351 9 7 6.1872 1.0269 2.3274 10 6 7.5277 1.0403 2.4663 11 8 8.2363 1.2058 1.4960 12 6 8.1461 0.8507 3.8274 13 6 9.6474 0.9075 3.7094 14 6 10.3670 -0.2516 3.4820 15 6 11.7443 -0.2028 3.3683 16 6 12.4066 1.0030 3.4922 17 6 11.6874 2.1676 3.7258 18 8 12.3356 3.3541 3.8486 19 6 13.6640 3.3527 3.6178 20 1 14.1783 2.4219 3.4294 21 6 14.3697 4.5462 3.6223 22 7 13.7429 5.6801 3.8513 23 14 16.2102 4.5442 3.3032 24 1 16.6717 3.1512 3.0759 25 1 16.5052 5.3662 2.1021 26 1 16.9169 5.1138 4.4785 27 6 10.3036 2.1160 3.8343 28 6 4.1320 0.6773 0.9831 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5140 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 1.7532 1.9294 0.9321 35 1 1.6042 1.9820 -0.8409 36 1 3.3657 3.4385 0.5681 37 1 4.1723 3.2457 -1.0123 38 1 6.2023 3.0613 0.0309 39 1 5.3982 3.2957 1.6124 40 1 5.6205 0.8948 3.1034 41 1 7.8042 1.6414 4.4952 42 1 7.8494 -0.1181 4.2294 43 1 9.8518 -1.1961 3.3888 44 1 12.3030 -1.1090 3.1866 45 1 13.4826 1.0400 3.4071 46 1 14.2367 6.5151 3.8548 47 1 9.7416 3.0200 4.0167 48 1 3.6316 0.8861 1.9287 49 1 4.1153 -0.3913 0.7683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000856073505.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:53 Heat of formation + Delta-G solvation = -66.009853 kcal Electronic energy + Delta-G solvation = -27504.859698 eV Core-core repulsion = 23624.114046 eV Total energy + Delta-G solvation = -3880.745652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28852 -40.63779 -39.69007 -38.16644 -36.11052 -34.44651 -34.32247 -33.41599 -31.18850 -30.81521 -29.78584 -28.21290 -27.23000 -26.13336 -23.49168 -23.15874 -22.74634 -22.03694 -21.43520 -21.11976 -19.50411 -18.81049 -18.09021 -17.60004 -17.06440 -16.79267 -16.55486 -16.13622 -16.00828 -15.79514 -15.57061 -15.48235 -15.06583 -14.85140 -14.55807 -14.35250 -14.14514 -14.01358 -13.82572 -13.59856 -13.57377 -13.03336 -12.98197 -12.78299 -12.66980 -12.57299 -12.47209 -12.32728 -12.21503 -12.18698 -12.08316 -11.87504 -11.61167 -11.52285 -11.20889 -10.96062 -10.79801 -10.10852 -9.63260 -9.44353 -8.97320 -8.47518 -6.15909 0.52497 0.76190 1.33391 1.42397 1.52320 1.68145 2.11695 2.17913 2.83828 3.03135 3.19116 3.45314 3.48926 3.69680 3.82094 3.97590 4.08465 4.11075 4.12254 4.17976 4.26547 4.32520 4.33238 4.45500 4.47879 4.57793 4.60008 4.66003 4.67706 4.74443 4.77534 4.82984 4.90630 4.91832 5.02136 5.07285 5.11426 5.13471 5.21676 5.31376 5.31644 5.41613 5.47478 5.65649 5.73326 5.76003 5.85003 6.02818 6.04288 6.24296 6.59260 6.97240 7.32954 7.78972 8.76316 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022058 B = 0.001964 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.099144 B =14254.835406 C =15085.683652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.048 3.952 4 N -0.529 5.529 5 C 0.044 3.956 6 C -0.145 4.145 7 C 0.142 3.858 8 H 0.073 0.927 9 N -0.709 5.709 10 C 0.516 3.484 11 O -0.577 6.577 12 C -0.090 4.090 13 C -0.026 4.026 14 C -0.180 4.180 15 C -0.075 4.075 16 C -0.247 4.247 17 C 0.110 3.890 18 O -0.235 6.235 19 C -0.413 4.413 20 H 0.100 0.900 21 C -0.025 4.025 22 N -0.922 5.922 23 Si 1.020 2.980 24 H -0.252 1.252 25 H -0.269 1.269 26 H -0.265 1.265 27 C -0.192 4.192 28 C 0.043 3.957 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.074 0.926 40 H 0.419 0.581 41 H 0.122 0.878 42 H 0.147 0.853 43 H 0.148 0.852 44 H 0.145 0.855 45 H 0.117 0.883 46 H 0.272 0.728 47 H 0.106 0.894 48 H 0.070 0.930 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.262 -13.700 -2.757 29.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.158 4.158 3 C -0.080 4.080 4 N -0.254 5.254 5 C -0.084 4.084 6 C -0.184 4.184 7 C 0.036 3.964 8 H 0.091 0.909 9 N -0.363 5.363 10 C 0.303 3.697 11 O -0.455 6.455 12 C -0.129 4.129 13 C -0.027 4.027 14 C -0.198 4.198 15 C -0.093 4.093 16 C -0.267 4.267 17 C 0.060 3.940 18 O -0.142 6.142 19 C -0.490 4.490 20 H 0.117 0.883 21 C -0.222 4.222 22 N -0.561 5.561 23 Si 0.840 3.160 24 H -0.175 1.175 25 H -0.194 1.194 26 H -0.190 1.190 27 C -0.211 4.211 28 C -0.085 4.085 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.061 0.939 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.257 0.743 41 H 0.140 0.860 42 H 0.164 0.836 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.135 0.865 46 H 0.081 0.919 47 H 0.124 0.876 48 H 0.088 0.912 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -25.710 -13.380 -3.884 29.242 hybrid contribution 0.767 1.087 0.744 1.524 sum -24.943 -12.293 -3.140 27.984 Atomic orbital electron populations 1.21718 0.94685 1.02248 1.02052 1.21535 0.96341 0.95453 1.02509 1.22408 0.86326 0.98246 1.01022 1.64763 1.06752 1.10661 1.43232 1.22776 0.94305 0.90495 1.00855 1.22801 0.97530 0.97096 1.00975 1.21704 0.94349 0.95145 0.85181 0.90855 1.45770 1.05971 1.74023 1.10560 1.20963 0.82398 0.75076 0.91249 1.90770 1.62515 1.49647 1.42581 1.20708 0.89953 1.07909 0.94352 1.19215 0.95100 0.91678 0.96697 1.20987 0.93710 0.98341 1.06796 1.21144 0.95150 0.96499 0.96461 1.21297 1.00428 0.93296 1.11635 1.19894 0.93083 0.86512 0.94478 1.83933 1.23244 1.28053 1.78995 1.21862 0.80666 0.95883 1.50548 0.88283 1.26617 1.06075 0.93324 0.96185 1.70200 1.38771 0.98783 1.48303 0.84510 0.73502 0.79546 0.78489 1.17546 1.19445 1.18993 1.20220 0.90841 0.98736 1.11327 1.23358 0.91214 0.99718 0.94198 0.92578 0.92044 0.92416 0.91871 0.91546 0.93941 0.90461 0.92262 0.90364 0.92816 0.90762 0.74322 0.85978 0.83574 0.83392 0.83727 0.86546 0.91880 0.87616 0.91156 0.88521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 71.98 0.71 -0.40 16 2 C -0.12 -1.14 5.61 30.59 0.17 -0.97 16 3 C 0.05 0.53 4.85 86.30 0.42 0.95 16 4 N -0.53 -7.96 5.35 -883.00 -4.73 -12.68 16 5 C 0.04 0.71 6.70 86.45 0.58 1.28 16 6 C -0.14 -2.97 6.67 31.48 0.21 -2.76 16 7 C 0.14 2.75 3.34 46.19 0.15 2.91 16 8 H 0.07 1.89 7.71 -2.39 -0.02 1.87 16 9 N -0.71 -12.41 5.14 -436.84 -2.25 -14.66 16 10 C 0.52 13.70 7.82 87.66 0.69 14.38 16 11 O -0.58 -22.54 15.77 -3.04 -0.05 -22.59 16 12 C -0.09 -2.03 5.83 29.10 0.17 -1.86 16 13 C -0.03 -0.92 4.37 -19.88 -0.09 -1.01 16 14 C -0.18 -5.95 9.70 22.30 0.22 -5.74 16 15 C -0.07 -2.76 10.04 22.25 0.22 -2.54 16 16 C -0.25 -11.61 9.17 22.39 0.21 -11.40 16 17 C 0.11 5.89 6.65 22.58 0.15 6.04 16 18 O -0.24 -14.96 9.76 -22.82 -0.22 -15.19 16 19 C -0.41 -25.31 9.49 67.92 0.64 -24.66 16 20 H 0.10 5.61 5.20 -2.91 -0.02 5.60 16 21 C -0.03 -1.48 5.49 84.83 0.47 -1.01 16 22 N -0.92 -58.55 13.67 21.61 0.30 -58.26 16 23 Si 1.02 44.66 29.55 68.60 2.03 46.69 16 24 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 C -0.19 -8.76 9.65 22.39 0.22 -8.54 16 28 C 0.04 0.56 4.96 86.65 0.43 0.99 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.56 7.17 -2.38 -0.02 0.55 16 34 H 0.04 0.42 7.97 -2.39 -0.02 0.41 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 40 H 0.42 3.86 8.53 -92.71 -0.79 3.07 16 41 H 0.12 2.27 8.08 -2.39 -0.02 2.25 16 42 H 0.15 1.96 8.08 -2.39 -0.02 1.95 16 43 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 44 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 45 H 0.12 5.54 5.64 -2.91 -0.02 5.52 16 46 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 47 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 48 H 0.07 0.64 7.89 -2.39 -0.02 0.62 16 49 H 0.10 1.15 7.76 -2.38 -0.02 1.13 16 Total: -1.00 -84.11 400.01 0.80 -83.31 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.15 Total: 27.71 kcal Atomic # 6 Polarization: -39.90 SS G_CDS: 5.57 Total: -34.33 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -6.68 Total: -85.60 kcal Atomic # 8 Polarization: -37.50 SS G_CDS: -0.27 Total: -37.77 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -84.11 0.80 -83.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856073505.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.299 kcal (2) G-P(sol) polarization free energy of solvation -84.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds