Wall clock time and date at job start Tue Mar 31 2020 16:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 117.00089 * 2 1 4 4 C 1.38731 * 120.05586 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94349 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05653 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94460 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47465 * 14.19586 * 7 6 5 9 9 N 1.46902 * 109.46846 * 134.19575 * 7 6 5 10 10 C 1.46897 * 110.99855 * 275.66352 * 9 7 6 11 11 C 1.53000 * 109.47225 * 273.61208 * 10 9 7 12 12 C 1.52998 * 109.47063 * 153.61202 * 10 9 7 13 13 C 1.50697 * 109.47312 * 254.19151 * 7 6 5 14 14 O 1.21280 * 120.00572 * 264.31211 * 13 7 6 15 15 N 1.34781 * 119.99967 * 84.31446 * 13 7 6 16 16 C 1.47070 * 136.05503 * 359.63172 * 15 13 7 17 17 C 1.53756 * 87.88657 * 152.96267 * 16 15 13 18 18 C 1.50695 * 114.08415 * 139.77986 * 17 16 15 19 19 H 1.08001 * 120.00098 * 266.55447 * 18 17 16 20 20 C 1.37888 * 120.00207 * 86.56224 * 18 17 16 21 21 N 1.31516 * 119.99750 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00113 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47284 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47148 * 119.99885 * 22 20 18 25 25 H 1.48501 * 109.47142 * 239.99991 * 22 20 18 26 26 C 1.47063 * 136.06132 * 179.97438 * 15 13 7 27 27 C 1.38271 * 120.11174 * 0.28388 * 6 5 4 28 28 C 1.38141 * 120.05378 * 359.44251 * 27 6 5 29 29 H 1.08995 * 109.46980 * 60.00544 * 1 2 3 30 30 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46790 * 299.99688 * 1 2 3 32 32 H 1.08003 * 120.02944 * 359.95785 * 4 3 2 33 33 H 1.08007 * 119.97156 * 180.02562 * 5 4 3 34 34 H 1.00893 * 111.00478 * 39.61991 * 9 7 6 35 35 H 1.08998 * 109.47534 * 33.60934 * 10 9 7 36 36 H 1.09004 * 109.47361 * 175.70545 * 11 10 9 37 37 H 1.09000 * 109.47409 * 55.70643 * 11 10 9 38 38 H 1.08998 * 109.47021 * 295.70372 * 11 10 9 39 39 H 1.09003 * 109.47132 * 179.97438 * 12 10 9 40 40 H 1.09002 * 109.47526 * 299.99851 * 12 10 9 41 41 H 1.09002 * 109.47244 * 60.00254 * 12 10 9 42 42 H 1.08997 * 113.46681 * 267.69467 * 16 15 13 43 43 H 1.09007 * 113.46612 * 38.12953 * 16 15 13 44 44 H 1.09000 * 114.57285 * 272.65742 * 17 16 15 45 45 H 0.96992 * 119.99780 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.46557 * 321.86854 * 26 15 13 47 47 H 1.09003 * 113.46380 * 92.30561 * 26 15 13 48 48 H 1.07998 * 119.96797 * 179.70054 * 27 6 5 49 49 H 1.07998 * 120.02735 * 180.27630 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0389 4.8896 -0.2542 9 7 3.3486 5.8919 -0.9970 10 6 3.9064 5.6602 -2.3361 11 6 5.1560 6.5228 -2.5243 12 6 2.8655 6.0328 -3.3937 13 6 3.8688 5.6433 1.3635 14 8 2.9787 6.4340 1.5943 15 7 4.7530 5.3233 2.3291 16 6 5.9222 4.4385 2.4433 17 6 6.4574 5.3807 3.5342 18 6 7.0988 4.6715 4.6988 19 1 6.5137 4.4331 5.5747 20 6 8.4330 4.3270 4.6463 21 7 9.1455 4.6170 3.5796 22 14 9.2283 3.4485 6.0902 23 1 8.2192 3.2400 7.1596 24 1 9.7536 2.1340 5.6415 25 1 10.3445 4.2737 6.6178 26 6 4.9697 5.7007 3.7339 27 6 1.9211 3.6047 0.0032 28 6 1.2915 2.3751 -0.0019 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0209 0.3799 0.0016 33 1 5.1346 2.5749 0.0000 34 1 2.3471 5.7698 -0.9965 35 1 4.1718 4.6084 -2.4422 36 1 5.6132 6.2949 -3.4872 37 1 5.8670 6.3115 -1.7255 38 1 4.8782 7.5763 -2.4942 39 1 3.2796 5.8613 -4.3873 40 1 1.9752 5.4183 -3.2597 41 1 2.6003 7.0848 -3.2876 42 1 5.6782 3.4422 2.8118 43 1 6.5395 4.4168 1.5451 44 1 7.0480 6.2172 3.1608 45 1 10.0838 4.3743 3.5425 46 1 4.7756 6.7542 3.9352 47 1 4.4744 5.0373 4.4429 48 1 1.3343 4.5114 0.0069 49 1 0.2130 2.3202 -0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898675098.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:16 Heat of formation + Delta-G solvation = -9.873073 kcal Electronic energy + Delta-G solvation = -29211.020063 eV Core-core repulsion = 25332.708684 eV Total energy + Delta-G solvation = -3878.311379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52611 -39.52395 -38.24194 -36.91220 -36.35494 -32.73136 -32.53025 -31.20054 -29.45414 -29.22235 -27.45983 -27.30093 -25.94527 -24.93796 -24.29485 -22.80826 -21.68672 -20.51829 -20.08991 -18.35528 -18.13374 -16.87245 -16.74086 -16.16667 -16.02393 -15.90772 -15.61630 -15.26569 -14.69085 -14.60307 -14.24671 -14.14126 -13.87148 -13.49979 -13.27414 -13.02074 -12.84577 -12.46443 -12.40466 -12.24129 -12.15206 -12.06431 -11.80514 -11.58564 -11.47065 -11.35650 -11.21146 -11.15601 -11.01933 -10.94489 -10.81115 -10.77137 -10.33011 -9.61196 -9.20277 -9.08982 -9.05281 -8.59224 -8.35659 -8.14840 -7.79093 -6.17565 -4.22597 1.24857 1.27397 3.08128 3.22581 3.23358 3.32284 3.35511 3.44482 3.68255 4.31014 4.39205 4.62506 4.74750 4.77884 4.86331 4.90124 4.94803 4.98430 5.11637 5.19368 5.19932 5.24918 5.30086 5.33608 5.45861 5.58254 5.60684 5.78424 5.80658 5.86922 5.94007 6.05874 6.08169 6.14369 6.21502 6.23641 6.29753 6.34096 6.46773 6.48279 6.58133 6.63458 6.67082 6.81175 7.05985 7.22976 7.40546 7.57923 7.80795 8.20016 8.59805 8.81572 8.86688 9.44145 10.92190 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009354 B = 0.003778 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.519146 B = 7408.699942 C = 9162.871037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.148 4.148 5 C -0.061 4.061 6 C -0.143 4.143 7 C 0.122 3.878 8 H 0.103 0.897 9 N -0.659 5.659 10 C 0.078 3.922 11 C -0.142 4.142 12 C -0.152 4.152 13 C 0.548 3.452 14 O -0.552 6.552 15 N -0.641 5.641 16 C 0.099 3.901 17 C 0.035 3.965 18 C -0.516 4.516 19 H 0.063 0.937 20 C 0.069 3.931 21 N -0.885 5.885 22 Si 0.894 3.106 23 H -0.271 1.271 24 H -0.283 1.283 25 H -0.283 1.283 26 C 0.101 3.899 27 C -0.068 4.068 28 C -0.206 4.206 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.347 0.653 35 H 0.047 0.953 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.069 0.931 45 H 0.263 0.737 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.127 0.873 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.177 -5.969 -13.022 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.081 3.919 4 C -0.166 4.166 5 C -0.080 4.080 6 C -0.146 4.146 7 C 0.009 3.991 8 H 0.121 0.879 9 N -0.292 5.292 10 C -0.031 4.031 11 C -0.200 4.200 12 C -0.210 4.210 13 C 0.336 3.664 14 O -0.430 6.430 15 N -0.375 5.375 16 C -0.023 4.023 17 C 0.016 3.984 18 C -0.554 4.554 19 H 0.082 0.918 20 C -0.134 4.134 21 N -0.522 5.522 22 Si 0.721 3.279 23 H -0.196 1.196 24 H -0.209 1.209 25 H -0.209 1.209 26 C -0.021 4.021 27 C -0.086 4.086 28 C -0.224 4.224 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.074 0.926 32 H 0.151 0.849 33 H 0.152 0.848 34 H 0.168 0.832 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.145 0.855 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.135 -5.138 -13.035 19.205 hybrid contribution -0.152 -1.378 0.531 1.485 sum -13.287 -6.516 -12.504 19.374 Atomic orbital electron populations 1.23044 0.78514 1.03822 1.01379 1.86068 1.21303 1.27024 1.88760 1.19055 0.92407 0.84034 0.96404 1.20420 0.91286 0.98672 1.06245 1.20952 1.00184 0.90756 0.96063 1.20219 0.94037 0.95238 1.05080 1.20299 0.99639 0.87395 0.91779 0.87861 1.60357 1.09683 1.55021 1.04098 1.21536 0.95589 0.98142 0.87840 1.21827 0.96665 1.00529 1.00935 1.21959 0.98325 1.02367 0.98357 1.19649 0.80225 0.81766 0.84757 1.90605 1.34170 1.36236 1.81996 1.49956 1.29862 1.45138 1.12582 1.23633 0.82854 0.95519 1.00318 1.20384 0.89083 0.95111 0.93816 1.20961 0.94875 1.37984 1.01589 0.91845 1.25015 0.97132 0.95392 0.95911 1.69958 1.08190 1.46152 1.27944 0.86507 0.79424 0.79344 0.82591 1.19575 1.20911 1.20880 1.23304 0.98723 0.99301 0.80755 1.20758 0.93941 0.97305 0.96602 1.21142 0.99894 0.92121 1.09282 0.92730 0.88311 0.92597 0.84935 0.84834 0.83229 0.93545 0.92704 0.92437 0.91998 0.91912 0.92925 0.91656 0.90904 0.92476 0.91304 0.92726 0.92516 0.91115 0.85528 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.73 10.50 -19.42 -0.20 -3.94 16 3 C 0.13 1.61 6.69 -39.22 -0.26 1.35 16 4 C -0.15 -1.92 9.99 -39.43 -0.39 -2.31 16 5 C -0.06 -0.83 9.66 -39.61 -0.38 -1.21 16 6 C -0.14 -2.05 4.56 -104.60 -0.48 -2.53 16 7 C 0.12 1.93 2.26 -70.02 -0.16 1.77 16 8 H 0.10 1.62 6.91 -51.93 -0.36 1.26 16 9 N -0.66 -9.40 5.66 -102.18 -0.58 -9.98 16 10 C 0.08 0.92 3.02 -67.72 -0.20 0.71 16 11 C -0.14 -1.67 9.43 37.16 0.35 -1.31 16 12 C -0.15 -1.45 9.17 37.16 0.34 -1.11 16 13 C 0.55 10.92 7.20 -10.98 -0.08 10.84 16 14 O -0.55 -12.48 17.38 5.56 0.10 -12.38 16 15 N -0.64 -13.20 3.69 -185.08 -0.68 -13.89 16 16 C 0.10 2.07 7.95 -8.37 -0.07 2.01 16 17 C 0.04 0.83 3.80 -91.14 -0.35 0.48 16 18 C -0.52 -13.10 8.82 -34.44 -0.30 -13.41 16 19 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 20 C 0.07 1.78 5.46 -17.81 -0.10 1.68 16 21 N -0.89 -23.87 13.26 55.43 0.74 -23.13 16 22 Si 0.89 20.02 29.54 -169.99 -5.02 14.99 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.10 2.16 8.17 -8.53 -0.07 2.09 16 27 C -0.07 -0.91 8.96 -39.60 -0.35 -1.26 16 28 C -0.21 -2.49 9.04 -39.43 -0.36 -2.85 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.40 7.67 -51.93 -0.40 0.00 16 32 H 0.13 1.53 8.06 -52.48 -0.42 1.11 16 33 H 0.13 1.70 7.99 -52.48 -0.42 1.28 16 34 H 0.35 4.73 6.25 -39.30 -0.25 4.48 16 35 H 0.05 0.55 7.60 -51.93 -0.39 0.15 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.76 7.48 -51.93 -0.39 0.37 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 43 H 0.06 1.16 8.11 -51.92 -0.42 0.74 16 44 H 0.07 1.77 8.11 -51.93 -0.42 1.34 16 45 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 48 H 0.13 1.65 6.86 -52.49 -0.36 1.29 16 49 H 0.13 1.23 6.30 -52.49 -0.33 0.90 16 LS Contribution 403.61 15.07 6.08 6.08 Total: -1.00 -29.92 403.61 -9.34 -39.27 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.90 Total: 6.83 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: -1.87 Total: -3.86 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: -0.53 Total: -47.00 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.11 Total: -16.31 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -29.92 -9.34 -39.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898675098.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.396 kcal (2) G-P(sol) polarization free energy of solvation -29.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds