Wall clock time and date at job start Tue Mar 31 2020 16:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 117.00089 * 2 1 4 4 C 1.38731 * 120.05586 * 179.97438 * 3 2 1 5 5 C 1.38142 * 119.94349 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05653 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94460 * 180.02562 * 6 5 4 8 8 H 1.08999 * 109.47465 * 14.19586 * 7 6 5 9 9 N 1.46902 * 109.46846 * 134.19575 * 7 6 5 10 10 C 1.46897 * 110.99855 * 275.66352 * 9 7 6 11 11 C 1.53000 * 109.47225 * 273.61208 * 10 9 7 12 12 C 1.52998 * 109.47063 * 153.61202 * 10 9 7 13 13 C 1.50697 * 109.47312 * 254.19151 * 7 6 5 14 14 O 1.21280 * 120.00572 * 264.31211 * 13 7 6 15 15 N 1.34781 * 119.99967 * 84.31446 * 13 7 6 16 16 C 1.47070 * 136.05503 * 359.63172 * 15 13 7 17 17 C 1.53756 * 87.88657 * 152.96267 * 16 15 13 18 18 C 1.50695 * 114.08415 * 139.77986 * 17 16 15 19 19 H 1.08001 * 120.00098 * 266.55447 * 18 17 16 20 20 C 1.37888 * 120.00207 * 86.56224 * 18 17 16 21 21 N 1.31516 * 119.99750 * 359.97438 * 20 18 17 22 22 Si 1.86793 * 120.00113 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47284 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47148 * 119.99885 * 22 20 18 25 25 H 1.48501 * 109.47142 * 239.99991 * 22 20 18 26 26 C 1.47063 * 136.06132 * 179.97438 * 15 13 7 27 27 C 1.38271 * 120.11174 * 0.28388 * 6 5 4 28 28 C 1.38141 * 120.05378 * 359.44251 * 27 6 5 29 29 H 1.08995 * 109.46980 * 60.00544 * 1 2 3 30 30 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46790 * 299.99688 * 1 2 3 32 32 H 1.08003 * 120.02944 * 359.95785 * 4 3 2 33 33 H 1.08007 * 119.97156 * 180.02562 * 5 4 3 34 34 H 1.00893 * 111.00478 * 39.61991 * 9 7 6 35 35 H 1.08998 * 109.47534 * 33.60934 * 10 9 7 36 36 H 1.09004 * 109.47361 * 175.70545 * 11 10 9 37 37 H 1.09000 * 109.47409 * 55.70643 * 11 10 9 38 38 H 1.08998 * 109.47021 * 295.70372 * 11 10 9 39 39 H 1.09003 * 109.47132 * 179.97438 * 12 10 9 40 40 H 1.09002 * 109.47526 * 299.99851 * 12 10 9 41 41 H 1.09002 * 109.47244 * 60.00254 * 12 10 9 42 42 H 1.08997 * 113.46681 * 267.69467 * 16 15 13 43 43 H 1.09007 * 113.46612 * 38.12953 * 16 15 13 44 44 H 1.09000 * 114.57285 * 272.65742 * 17 16 15 45 45 H 0.96992 * 119.99780 * 180.02562 * 21 20 18 46 46 H 1.09000 * 113.46557 * 321.86854 * 26 15 13 47 47 H 1.09003 * 113.46380 * 92.30561 * 26 15 13 48 48 H 1.07998 * 119.96797 * 179.70054 * 27 6 5 49 49 H 1.07998 * 120.02735 * 180.27630 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4314 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6757 -0.0016 7 6 3.9862 5.0184 -0.0028 8 1 5.0389 4.8896 -0.2542 9 7 3.3486 5.8919 -0.9970 10 6 3.9064 5.6602 -2.3361 11 6 5.1560 6.5228 -2.5243 12 6 2.8655 6.0328 -3.3937 13 6 3.8688 5.6433 1.3635 14 8 2.9787 6.4340 1.5943 15 7 4.7530 5.3233 2.3291 16 6 5.9222 4.4385 2.4433 17 6 6.4574 5.3807 3.5342 18 6 7.0988 4.6715 4.6988 19 1 6.5137 4.4331 5.5747 20 6 8.4330 4.3270 4.6463 21 7 9.1455 4.6170 3.5796 22 14 9.2283 3.4485 6.0902 23 1 8.2192 3.2400 7.1596 24 1 9.7536 2.1340 5.6415 25 1 10.3445 4.2737 6.6178 26 6 4.9697 5.7007 3.7339 27 6 1.9211 3.6047 0.0032 28 6 1.2915 2.3751 -0.0019 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 4.0209 0.3799 0.0016 33 1 5.1346 2.5749 0.0000 34 1 2.3471 5.7698 -0.9965 35 1 4.1718 4.6084 -2.4422 36 1 5.6132 6.2949 -3.4872 37 1 5.8670 6.3115 -1.7255 38 1 4.8782 7.5763 -2.4942 39 1 3.2796 5.8613 -4.3873 40 1 1.9752 5.4183 -3.2597 41 1 2.6003 7.0848 -3.2876 42 1 5.6782 3.4422 2.8118 43 1 6.5395 4.4168 1.5451 44 1 7.0480 6.2172 3.1608 45 1 10.0838 4.3743 3.5425 46 1 4.7756 6.7542 3.9352 47 1 4.4744 5.0373 4.4429 48 1 1.3343 4.5114 0.0069 49 1 0.2130 2.3202 -0.0026 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898675098.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:14 Heat of formation + Delta-G solvation = -27.386750 kcal Electronic energy + Delta-G solvation = -29211.779513 eV Core-core repulsion = 25332.708684 eV Total energy + Delta-G solvation = -3879.070829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.67904 -40.85482 -39.52689 -38.30127 -37.47480 -34.63332 -33.66625 -32.19135 -30.95276 -30.37329 -28.32650 -28.11480 -27.49334 -26.70106 -25.74028 -23.81648 -22.83027 -21.89722 -21.32495 -19.73848 -19.25389 -18.70912 -18.00756 -17.52888 -17.15678 -16.89113 -16.67901 -16.50175 -16.38436 -15.91422 -15.65242 -15.12875 -14.94327 -14.65057 -14.42649 -14.29975 -14.14576 -13.92532 -13.55101 -13.43089 -13.24410 -13.15478 -13.02922 -12.89223 -12.76686 -12.73638 -12.60888 -12.52722 -12.25042 -12.16481 -12.03902 -11.92656 -11.74930 -11.34793 -11.04157 -10.74435 -10.51749 -10.08194 -9.52228 -9.51513 -9.16748 -8.15043 -6.25788 0.22911 0.27329 1.46564 1.50284 1.60488 1.67843 1.93664 2.31119 2.47183 2.64166 3.12497 3.17518 3.61921 3.66116 3.74517 3.83221 4.00959 4.11625 4.18886 4.22945 4.27290 4.35651 4.36833 4.41440 4.42682 4.48263 4.56119 4.61016 4.70934 4.71753 4.81127 4.82329 4.88535 4.93624 4.95460 4.96700 4.99900 5.07322 5.14624 5.24977 5.28158 5.38014 5.45780 5.61187 5.65808 5.83214 5.95857 6.25200 6.35207 6.36585 6.82506 6.94751 7.23226 7.44130 8.95065 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.009354 B = 0.003778 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2992.519146 B = 7408.699942 C = 9162.871037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.125 3.875 4 C -0.157 4.157 5 C -0.067 4.067 6 C -0.156 4.156 7 C 0.136 3.864 8 H 0.101 0.899 9 N -0.670 5.670 10 C 0.078 3.922 11 C -0.140 4.140 12 C -0.146 4.146 13 C 0.543 3.457 14 O -0.581 6.581 15 N -0.643 5.643 16 C 0.118 3.882 17 C 0.025 3.975 18 C -0.527 4.527 19 H 0.064 0.936 20 C 0.024 3.976 21 N -0.916 5.916 22 Si 0.956 3.044 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.283 1.283 26 C 0.105 3.895 27 C -0.074 4.074 28 C -0.202 4.202 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.060 0.940 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.349 0.651 35 H 0.048 0.952 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.039 0.961 45 H 0.265 0.735 46 H 0.054 0.946 47 H 0.080 0.920 48 H 0.127 0.873 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.403 -7.584 -13.721 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.079 3.921 4 C -0.175 4.175 5 C -0.085 4.085 6 C -0.158 4.158 7 C 0.023 3.977 8 H 0.118 0.882 9 N -0.304 5.304 10 C -0.030 4.030 11 C -0.198 4.198 12 C -0.204 4.204 13 C 0.333 3.667 14 O -0.461 6.461 15 N -0.377 5.377 16 C -0.005 4.005 17 C 0.005 3.995 18 C -0.566 4.566 19 H 0.083 0.917 20 C -0.176 4.176 21 N -0.554 5.554 22 Si 0.782 3.218 23 H -0.190 1.190 24 H -0.205 1.205 25 H -0.209 1.209 26 C -0.017 4.017 27 C -0.092 4.092 28 C -0.221 4.221 29 H 0.086 0.914 30 H 0.139 0.861 31 H 0.079 0.921 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.171 0.829 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.145 0.855 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.378 -6.760 -13.745 21.009 hybrid contribution 0.146 -0.870 0.734 1.148 sum -14.232 -7.630 -13.011 20.738 Atomic orbital electron populations 1.23368 0.76371 1.05717 1.02263 1.86061 1.23547 1.26451 1.88446 1.19191 0.92520 0.84718 0.95661 1.20601 0.91917 0.98789 1.06199 1.21014 1.00413 0.90866 0.96253 1.20100 0.94517 0.94420 1.06800 1.20059 0.99919 0.88166 0.89561 0.88150 1.60344 1.09946 1.54974 1.05093 1.21615 0.96114 0.98211 0.87095 1.21832 0.96436 1.00197 1.01361 1.21913 0.97912 1.02219 0.98312 1.20472 0.79269 0.81091 0.85899 1.90578 1.35274 1.37527 1.82756 1.49978 1.30112 1.45106 1.12483 1.23337 0.82661 0.95059 0.99397 1.20254 0.89831 0.94903 0.94463 1.21226 0.95330 1.37897 1.02103 0.91737 1.25716 0.97649 0.96099 0.98167 1.70059 1.08468 1.47290 1.29632 0.85534 0.78378 0.78192 0.79728 1.18961 1.20475 1.20948 1.23189 0.97344 0.99410 0.81776 1.20844 0.93619 0.97996 0.96762 1.21366 1.01189 0.91287 1.08219 0.91375 0.86089 0.92098 0.83874 0.84576 0.82920 0.93388 0.90497 0.94516 0.92616 0.90133 0.92246 0.91985 0.90413 0.92256 0.94249 0.92646 0.92768 0.90210 0.85480 0.82992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.03 10.50 -92.40 -0.97 -8.00 16 3 C 0.12 2.96 6.69 22.51 0.15 3.11 16 4 C -0.16 -3.87 9.99 22.36 0.22 -3.65 16 5 C -0.07 -1.77 9.66 22.25 0.21 -1.55 16 6 C -0.16 -4.37 4.56 -19.85 -0.09 -4.46 16 7 C 0.14 4.30 2.26 43.42 0.10 4.40 16 8 H 0.10 3.19 6.91 -2.39 -0.02 3.17 16 9 N -0.67 -18.93 5.66 -477.19 -2.70 -21.63 16 10 C 0.08 1.76 3.02 44.92 0.14 1.89 16 11 C -0.14 -3.22 9.43 71.98 0.68 -2.54 16 12 C -0.15 -2.50 9.17 71.98 0.66 -1.84 16 13 C 0.54 21.82 7.20 87.66 0.63 22.45 16 14 O -0.58 -26.54 17.38 -3.03 -0.05 -26.59 16 15 N -0.64 -26.78 3.69 -857.87 -3.16 -29.94 16 16 C 0.12 4.97 7.95 83.26 0.66 5.64 16 17 C 0.02 1.19 3.80 -11.13 -0.04 1.14 16 18 C -0.53 -26.94 8.82 25.60 0.23 -26.71 16 19 H 0.06 3.21 7.81 -2.91 -0.02 3.19 16 20 C 0.02 1.25 5.46 84.66 0.46 1.71 16 21 N -0.92 -49.91 13.26 21.45 0.28 -49.63 16 22 Si 0.96 40.87 29.54 68.60 2.03 42.90 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 25 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 26 C 0.11 4.55 8.17 83.17 0.68 5.23 16 27 C -0.07 -1.89 8.96 22.25 0.20 -1.70 16 28 C -0.20 -4.49 9.04 22.37 0.20 -4.29 16 29 H 0.07 0.67 7.66 -2.39 -0.02 0.66 16 30 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 0.71 7.67 -2.39 -0.02 0.69 16 32 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 33 H 0.14 3.42 7.99 -2.91 -0.02 3.40 16 34 H 0.35 9.35 6.25 -89.70 -0.56 8.79 16 35 H 0.05 1.08 7.60 -2.39 -0.02 1.06 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.04 0.98 7.48 -2.39 -0.02 0.96 16 38 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 0.94 8.12 -2.39 -0.02 0.92 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.08 3.21 8.10 -2.39 -0.02 3.19 16 43 H 0.06 2.45 8.11 -2.38 -0.02 2.43 16 44 H 0.04 2.11 8.11 -2.39 -0.02 2.09 16 45 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 46 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.08 3.29 8.10 -2.39 -0.02 3.27 16 48 H 0.13 3.21 6.86 -2.91 -0.02 3.19 16 49 H 0.15 2.51 6.30 -2.91 -0.02 2.49 16 Total: -1.00 -63.77 403.61 2.01 -61.77 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.38 Total: 30.98 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 6.20 Total: 0.15 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -5.58 Total: -101.20 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.02 Total: -34.59 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 2.03 Total: 42.90 kcal Total: -63.77 2.01 -61.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898675098.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.379 kcal (2) G-P(sol) polarization free energy of solvation -63.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds