Wall clock time and date at job start Tue Mar 31 2020 16:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 N 1.46905 * 109.47255 * 119.99841 * 2 1 3 5 5 C 1.46905 * 110.99646 * 293.20032 * 4 2 1 6 6 C 1.50702 * 109.46654 * 160.12262 * 5 4 2 7 7 H 1.07998 * 120.00040 * 4.69363 * 6 5 4 8 8 C 1.37880 * 119.99972 * 184.68998 * 6 5 4 9 9 N 1.31518 * 119.99910 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00096 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47282 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47400 * 120.00265 * 10 8 6 13 13 H 1.48506 * 109.46774 * 240.00191 * 10 8 6 14 14 C 1.46902 * 111.00123 * 169.25116 * 4 2 1 15 15 N 1.46500 * 109.46668 * 278.95474 * 14 4 2 16 16 C 1.33768 * 122.73395 * 89.97613 * 15 14 4 17 17 O 1.21236 * 125.26481 * 0.02562 * 16 15 14 18 18 C 1.51160 * 109.47287 * 180.02562 * 16 15 14 19 19 H 1.08993 * 113.31526 * 235.83712 * 18 16 15 20 20 C 1.56105 * 108.27534 * 109.24776 * 18 16 15 21 21 H 1.08995 * 116.23288 * 85.93487 * 20 18 16 22 22 C 1.53341 * 104.15574 * 316.63639 * 20 18 16 23 23 C 1.31796 * 108.42883 * 289.73712 * 22 20 18 24 24 C 1.53350 * 108.41082 * 0.02562 * 23 22 20 25 25 H 1.08999 * 116.28673 * 199.49140 * 24 23 22 26 26 C 1.57213 * 99.83998 * 326.68495 * 24 23 22 27 27 C 1.55747 * 104.03855 * 359.60495 * 18 16 15 28 28 C 1.53004 * 113.52953 * 236.43435 * 27 18 16 29 29 C 1.33789 * 122.72463 * 269.97429 * 15 14 4 30 30 O 1.21223 * 125.26061 * 0.03188 * 29 15 14 31 31 H 1.08997 * 109.47113 * 300.06365 * 1 2 3 32 32 H 1.08991 * 109.47018 * 60.07053 * 1 2 3 33 33 H 1.09006 * 109.46417 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47655 * 240.00157 * 2 1 3 35 35 H 1.09002 * 109.46898 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46769 * 299.99888 * 3 2 1 37 37 H 1.09005 * 109.47332 * 59.99802 * 3 2 1 38 38 H 1.08997 * 109.47155 * 280.11984 * 5 4 2 39 39 H 1.08997 * 109.47373 * 40.12683 * 5 4 2 40 40 H 0.96996 * 120.00462 * 179.97438 * 9 8 6 41 41 H 1.08997 * 109.47232 * 158.95336 * 14 4 2 42 42 H 1.08996 * 109.47212 * 38.94680 * 14 4 2 43 43 H 1.08000 * 125.78643 * 109.76365 * 22 20 18 44 44 H 1.08001 * 125.79496 * 180.02562 * 23 22 20 45 45 H 1.09010 * 112.52549 * 165.45311 * 26 24 23 46 46 H 1.09001 * 112.52154 * 293.31235 * 26 24 23 47 47 H 1.08999 * 109.47206 * 301.26889 * 28 27 18 48 48 H 1.09002 * 109.46871 * 61.26857 * 28 27 18 49 49 H 1.09001 * 109.46972 * 181.26691 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6858 0.0611 2.4155 6 6 1.7467 -0.8579 3.6084 7 1 2.0805 -1.8779 3.4878 8 6 1.3763 -0.3964 4.8538 9 7 0.9694 0.8457 5.0005 10 14 1.4524 -1.5351 6.3325 11 1 1.9392 -2.8710 5.9040 12 1 2.3808 -0.9707 7.3447 13 1 0.0970 -1.6692 6.9242 14 6 3.4655 -0.9376 1.1125 15 7 3.7106 -2.1276 0.2939 16 6 3.8850 -2.0707 -1.0311 17 8 3.8628 -1.0580 -1.6972 18 6 4.1140 -3.4645 -1.5696 19 1 5.0426 -3.5626 -2.1317 20 6 2.8514 -3.8883 -2.3838 21 1 2.8267 -3.5810 -3.4292 22 6 1.6737 -3.4322 -1.5140 23 6 1.6228 -4.2013 -0.4450 24 6 2.7636 -5.2228 -0.5285 25 1 2.6604 -6.1133 0.0915 26 6 2.8237 -5.4317 -2.0855 27 6 4.0535 -4.3724 -0.3056 28 6 5.3103 -5.2211 -0.1024 29 6 3.7782 -3.3597 0.8109 30 8 3.6483 -3.6343 1.9845 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5127 -0.8905 33 1 -0.3632 -1.0278 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6765 1.9563 -0.8900 37 1 1.6765 1.9564 0.8900 38 1 2.3996 0.8743 2.5465 39 1 0.6802 0.4715 2.3240 40 1 0.7085 1.1703 5.8765 41 1 3.8681 -1.0956 2.1130 42 1 3.9533 -0.0762 0.6563 43 1 1.0000 -2.6187 -1.7395 44 1 0.9003 -4.1252 0.3541 45 1 3.7366 -5.9350 -2.4043 46 1 1.9292 -5.9164 -2.4766 47 1 5.4650 -5.8559 -0.9749 48 1 6.1727 -4.5676 0.0289 49 1 5.1885 -5.8445 0.7834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902075512.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:23 Heat of formation + Delta-G solvation = -5.835662 kcal Electronic energy + Delta-G solvation = -31719.145004 eV Core-core repulsion = 27841.008701 eV Total energy + Delta-G solvation = -3878.136303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.92305 -39.21158 -38.22408 -37.34159 -35.08253 -32.81996 -32.74573 -30.87270 -29.83453 -28.56020 -27.36783 -26.61715 -26.14831 -24.26040 -23.91643 -22.39053 -21.10122 -20.43556 -19.37736 -18.54044 -18.40794 -16.92354 -16.75291 -16.43466 -16.05805 -15.66536 -15.09653 -14.77656 -14.58286 -14.16905 -13.91662 -13.76882 -13.59160 -13.41002 -13.03577 -12.60525 -12.54389 -12.47246 -12.32520 -12.14580 -11.99906 -11.88202 -11.68203 -11.49827 -11.34288 -11.21973 -11.10500 -11.01857 -10.83781 -10.60161 -10.58709 -10.49286 -10.26053 -9.94009 -9.77793 -9.52274 -9.35224 -9.10760 -8.98207 -8.38153 -7.35123 -5.98119 -3.98137 1.76598 2.22094 2.82469 3.07056 3.35566 3.43087 3.53013 3.78755 4.13165 4.24751 4.30582 4.48936 4.66237 4.71061 4.82537 4.90378 4.95447 5.05199 5.11453 5.36757 5.37822 5.46972 5.47583 5.55683 5.56879 5.59646 5.66909 5.70457 5.72571 5.75401 5.87442 5.95008 6.02752 6.08011 6.10237 6.16189 6.33153 6.39242 6.46641 6.50543 6.78507 6.81306 6.83259 7.11263 7.28837 7.33638 7.66918 7.90171 8.04463 8.11760 8.24608 8.54332 9.13662 9.66619 11.12267 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.005253 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.485875 B = 5328.959282 C = 6404.334681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 C -0.179 4.179 4 N -0.534 5.534 5 C 0.197 3.803 6 C -0.504 4.504 7 H 0.070 0.930 8 C 0.056 3.944 9 N -0.901 5.901 10 Si 0.893 3.107 11 H -0.269 1.269 12 H -0.286 1.286 13 H -0.286 1.286 14 C 0.268 3.732 15 N -0.555 5.555 16 C 0.538 3.462 17 O -0.489 6.489 18 C -0.127 4.127 19 H 0.129 0.871 20 C -0.056 4.056 21 H 0.113 0.887 22 C -0.174 4.174 23 C -0.154 4.154 24 C -0.055 4.055 25 H 0.114 0.886 26 C -0.112 4.112 27 C -0.095 4.095 28 C -0.120 4.120 29 C 0.537 3.463 30 O -0.458 6.458 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.063 0.937 38 H -0.008 1.008 39 H 0.044 0.956 40 H 0.259 0.741 41 H 0.110 0.890 42 H 0.061 0.939 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.035 -11.547 -16.758 21.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.038 4.038 3 C -0.237 4.237 4 N -0.259 5.259 5 C 0.072 3.928 6 C -0.542 4.542 7 H 0.088 0.912 8 C -0.145 4.145 9 N -0.541 5.541 10 Si 0.721 3.279 11 H -0.194 1.194 12 H -0.212 1.212 13 H -0.212 1.212 14 C 0.058 3.942 15 N -0.297 5.297 16 C 0.326 3.674 17 O -0.362 6.362 18 C -0.148 4.148 19 H 0.147 0.853 20 C -0.074 4.074 21 H 0.131 0.869 22 C -0.192 4.192 23 C -0.172 4.172 24 C -0.073 4.073 25 H 0.132 0.868 26 C -0.149 4.149 27 C -0.098 4.098 28 C -0.177 4.177 29 C 0.324 3.676 30 O -0.327 6.327 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.010 0.990 39 H 0.061 0.939 40 H 0.069 0.931 41 H 0.128 0.872 42 H 0.079 0.921 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.100 0.900 46 H 0.102 0.898 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.646 -11.421 -16.227 20.631 hybrid contribution 0.228 0.627 1.004 1.206 sum 5.874 -10.795 -15.223 19.564 Atomic orbital electron populations 1.21796 0.94949 1.01654 1.01136 1.21773 0.95556 0.92418 0.94020 1.22404 1.00815 0.98701 1.01823 1.62038 1.11020 1.49212 1.03678 1.19761 0.96573 0.91986 0.84468 1.21333 1.43040 0.98541 0.91317 0.91218 1.24947 0.95471 0.95093 0.98963 1.69966 1.45480 1.15136 1.23549 0.86496 0.77462 0.81407 0.82510 1.19385 1.21232 1.21191 1.22194 0.91814 0.84432 0.95788 1.46829 1.62636 1.10481 1.09737 1.20399 0.73987 0.91078 0.81913 1.90711 1.47896 1.35720 1.61916 1.23422 1.01802 0.92227 0.97365 0.85339 1.22799 0.90936 0.95437 0.98247 0.86893 1.24135 0.98175 1.00157 0.96726 1.24256 0.97939 0.96646 0.98339 1.22878 0.90732 0.96754 0.96944 0.86792 1.24063 1.02493 0.94701 0.93662 1.23071 0.98407 0.95464 0.92873 1.21461 0.93908 0.99148 1.03183 1.20799 0.74656 0.83022 0.89126 1.90789 1.44297 1.80892 1.16679 0.91764 0.93598 0.92713 0.90812 0.93297 0.93232 0.91776 0.98984 0.93851 0.93121 0.87172 0.92105 0.85086 0.84574 0.90028 0.89754 0.90820 0.91854 0.90772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.18 37.16 0.34 -2.11 16 2 C 0.07 1.33 2.87 -67.71 -0.19 1.14 16 3 C -0.18 -3.25 8.54 37.16 0.32 -2.93 16 4 N -0.53 -11.41 4.47 -231.96 -1.04 -12.45 16 5 C 0.20 5.01 3.27 -4.97 -0.02 4.99 16 6 C -0.50 -14.27 8.53 -34.44 -0.29 -14.56 16 7 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 10 Si 0.89 22.44 29.54 -169.99 -5.02 17.42 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.27 5.38 5.07 -63.31 -0.32 5.06 16 15 N -0.55 -9.52 2.58 -117.94 -0.30 -9.82 16 16 C 0.54 8.18 5.01 -11.21 -0.06 8.12 16 17 O -0.49 -8.48 15.74 5.60 0.09 -8.39 16 18 C -0.13 -1.39 3.64 -88.42 -0.32 -1.71 16 19 H 0.13 1.07 8.02 -51.93 -0.42 0.66 16 20 C -0.06 -0.54 4.98 -86.49 -0.43 -0.97 16 21 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 22 C -0.17 -2.19 8.53 -34.87 -0.30 -2.49 16 23 C -0.15 -2.05 8.51 -34.87 -0.30 -2.35 16 24 C -0.05 -0.58 4.56 -86.49 -0.39 -0.97 16 25 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 26 C -0.11 -0.87 6.64 -22.15 -0.15 -1.02 16 27 C -0.09 -1.09 0.92 -151.26 -0.14 -1.23 16 28 C -0.12 -1.04 9.16 37.16 0.34 -0.70 16 29 C 0.54 9.03 5.34 -10.16 -0.05 8.98 16 30 O -0.46 -9.58 17.46 5.61 0.10 -9.48 16 31 H 0.06 1.27 6.28 -51.93 -0.33 0.94 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 1.37 5.34 -51.93 -0.28 1.09 16 35 H 0.05 0.89 6.47 -51.93 -0.34 0.56 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.27 6.74 -51.93 -0.35 0.92 16 38 H -0.01 -0.21 7.33 -51.93 -0.38 -0.59 16 39 H 0.04 1.18 5.88 -51.93 -0.31 0.87 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.11 2.47 6.93 -51.93 -0.36 2.11 16 42 H 0.06 1.19 5.83 -51.93 -0.30 0.89 16 43 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 44 H 0.14 2.10 8.06 -52.49 -0.42 1.68 16 45 H 0.08 0.48 7.55 -51.92 -0.39 0.09 16 46 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.44 7.56 -51.93 -0.39 0.05 16 48 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 375.92 15.07 5.67 5.67 Total: -1.00 -32.51 375.92 -9.45 -41.96 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.61 Total: 2.43 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.06 Total: -1.24 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: -0.60 Total: -48.36 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.19 Total: -17.87 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.51 -9.45 -41.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902075512.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.125 kcal (2) G-P(sol) polarization free energy of solvation -32.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds