Wall clock time and date at job start Tue Mar 31 2020 16:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46822 * 2 1 4 4 N 1.46905 * 109.47255 * 119.99841 * 2 1 3 5 5 C 1.46905 * 110.99646 * 293.20032 * 4 2 1 6 6 C 1.50702 * 109.46654 * 160.12262 * 5 4 2 7 7 H 1.07998 * 120.00040 * 4.69363 * 6 5 4 8 8 C 1.37880 * 119.99972 * 184.68998 * 6 5 4 9 9 N 1.31518 * 119.99910 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00096 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47282 * 359.97438 * 10 8 6 12 12 H 1.48495 * 109.47400 * 120.00265 * 10 8 6 13 13 H 1.48506 * 109.46774 * 240.00191 * 10 8 6 14 14 C 1.46902 * 111.00123 * 169.25116 * 4 2 1 15 15 N 1.46500 * 109.46668 * 278.95474 * 14 4 2 16 16 C 1.33768 * 122.73395 * 89.97613 * 15 14 4 17 17 O 1.21236 * 125.26481 * 0.02562 * 16 15 14 18 18 C 1.51160 * 109.47287 * 180.02562 * 16 15 14 19 19 H 1.08993 * 113.31526 * 235.83712 * 18 16 15 20 20 C 1.56105 * 108.27534 * 109.24776 * 18 16 15 21 21 H 1.08995 * 116.23288 * 85.93487 * 20 18 16 22 22 C 1.53341 * 104.15574 * 316.63639 * 20 18 16 23 23 C 1.31796 * 108.42883 * 289.73712 * 22 20 18 24 24 C 1.53350 * 108.41082 * 0.02562 * 23 22 20 25 25 H 1.08999 * 116.28673 * 199.49140 * 24 23 22 26 26 C 1.57213 * 99.83998 * 326.68495 * 24 23 22 27 27 C 1.55747 * 104.03855 * 359.60495 * 18 16 15 28 28 C 1.53004 * 113.52953 * 236.43435 * 27 18 16 29 29 C 1.33789 * 122.72463 * 269.97429 * 15 14 4 30 30 O 1.21223 * 125.26061 * 0.03188 * 29 15 14 31 31 H 1.08997 * 109.47113 * 300.06365 * 1 2 3 32 32 H 1.08991 * 109.47018 * 60.07053 * 1 2 3 33 33 H 1.09006 * 109.46417 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47655 * 240.00157 * 2 1 3 35 35 H 1.09002 * 109.46898 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.46769 * 299.99888 * 3 2 1 37 37 H 1.09005 * 109.47332 * 59.99802 * 3 2 1 38 38 H 1.08997 * 109.47155 * 280.11984 * 5 4 2 39 39 H 1.08997 * 109.47373 * 40.12683 * 5 4 2 40 40 H 0.96996 * 120.00462 * 179.97438 * 9 8 6 41 41 H 1.08997 * 109.47232 * 158.95336 * 14 4 2 42 42 H 1.08996 * 109.47212 * 38.94680 * 14 4 2 43 43 H 1.08000 * 125.78643 * 109.76365 * 22 20 18 44 44 H 1.08001 * 125.79496 * 180.02562 * 23 22 20 45 45 H 1.09010 * 112.52549 * 165.45311 * 26 24 23 46 46 H 1.09001 * 112.52154 * 293.31235 * 26 24 23 47 47 H 1.08999 * 109.47206 * 301.26889 * 28 27 18 48 48 H 1.09002 * 109.46871 * 61.26857 * 28 27 18 49 49 H 1.09001 * 109.46972 * 181.26691 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.6858 0.0611 2.4155 6 6 1.7467 -0.8579 3.6084 7 1 2.0805 -1.8779 3.4878 8 6 1.3763 -0.3964 4.8538 9 7 0.9694 0.8457 5.0005 10 14 1.4524 -1.5351 6.3325 11 1 1.9392 -2.8710 5.9040 12 1 2.3808 -0.9707 7.3447 13 1 0.0970 -1.6692 6.9242 14 6 3.4655 -0.9376 1.1125 15 7 3.7106 -2.1276 0.2939 16 6 3.8850 -2.0707 -1.0311 17 8 3.8628 -1.0580 -1.6972 18 6 4.1140 -3.4645 -1.5696 19 1 5.0426 -3.5626 -2.1317 20 6 2.8514 -3.8883 -2.3838 21 1 2.8267 -3.5810 -3.4292 22 6 1.6737 -3.4322 -1.5140 23 6 1.6228 -4.2013 -0.4450 24 6 2.7636 -5.2228 -0.5285 25 1 2.6604 -6.1133 0.0915 26 6 2.8237 -5.4317 -2.0855 27 6 4.0535 -4.3724 -0.3056 28 6 5.3103 -5.2211 -0.1024 29 6 3.7782 -3.3597 0.8109 30 8 3.6483 -3.6343 1.9845 31 1 -0.3633 0.5148 0.8894 32 1 -0.3633 0.5127 -0.8905 33 1 -0.3632 -1.0278 0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1300 1.4426 0.0005 36 1 1.6765 1.9563 -0.8900 37 1 1.6765 1.9564 0.8900 38 1 2.3996 0.8743 2.5465 39 1 0.6802 0.4715 2.3240 40 1 0.7085 1.1703 5.8765 41 1 3.8681 -1.0956 2.1130 42 1 3.9533 -0.0762 0.6563 43 1 1.0000 -2.6187 -1.7395 44 1 0.9003 -4.1252 0.3541 45 1 3.7366 -5.9350 -2.4043 46 1 1.9292 -5.9164 -2.4766 47 1 5.4650 -5.8559 -0.9749 48 1 6.1727 -4.5676 0.0289 49 1 5.1885 -5.8445 0.7834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902075512.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:23 Heat of formation + Delta-G solvation = -26.813506 kcal Electronic energy + Delta-G solvation = -31720.054672 eV Core-core repulsion = 27841.008701 eV Total energy + Delta-G solvation = -3879.045971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.01240 -40.44682 -39.58803 -38.94326 -36.47846 -34.93982 -33.81456 -32.47630 -30.84679 -29.80258 -28.74867 -28.12399 -27.46985 -25.72345 -25.17523 -24.34800 -22.08606 -21.42419 -20.69886 -20.03824 -19.45803 -18.79470 -18.08860 -17.73110 -17.36172 -16.95013 -16.67137 -16.41032 -16.16250 -15.75655 -15.23969 -15.05015 -14.92601 -14.70183 -14.36024 -14.18745 -14.00335 -13.78302 -13.36927 -13.28858 -13.24355 -13.03051 -12.99802 -12.92536 -12.88742 -12.67105 -12.41814 -12.30865 -12.25871 -12.20795 -12.07057 -11.89179 -11.54799 -11.51885 -11.38381 -11.13107 -10.83658 -10.78386 -10.60930 -9.98790 -9.16773 -8.23908 -6.31528 0.53858 1.19131 1.31967 1.33031 1.48122 1.51151 1.83648 2.36238 2.85011 3.04902 3.10669 3.19693 3.29319 3.45842 3.81290 3.81665 3.85574 3.95982 4.00941 4.08447 4.14242 4.24800 4.28562 4.34015 4.37215 4.53219 4.62531 4.64858 4.66437 4.77259 4.79804 4.89316 4.90425 4.91284 4.94912 5.02798 5.11529 5.16196 5.19916 5.23461 5.27712 5.30612 5.34184 5.52637 5.64997 5.80631 5.92904 6.04408 6.19020 6.43933 6.53130 6.79866 6.91037 7.37159 8.86146 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.005253 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.485875 B = 5328.959282 C = 6404.334681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.072 3.928 3 C -0.170 4.170 4 N -0.539 5.539 5 C 0.219 3.781 6 C -0.517 4.517 7 H 0.050 0.950 8 C 0.009 3.991 9 N -0.929 5.929 10 Si 0.957 3.043 11 H -0.277 1.277 12 H -0.274 1.274 13 H -0.274 1.274 14 C 0.275 3.725 15 N -0.562 5.562 16 C 0.531 3.469 17 O -0.511 6.511 18 C -0.112 4.112 19 H 0.175 0.825 20 C -0.047 4.047 21 H 0.140 0.860 22 C -0.178 4.178 23 C -0.180 4.180 24 C -0.055 4.055 25 H 0.121 0.879 26 C -0.087 4.087 27 C -0.080 4.080 28 C -0.118 4.118 29 C 0.525 3.475 30 O -0.514 6.514 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.076 0.924 37 H 0.041 0.959 38 H -0.031 1.031 39 H 0.024 0.976 40 H 0.264 0.736 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.112 0.888 44 H 0.096 0.904 45 H 0.122 0.878 46 H 0.097 0.903 47 H 0.119 0.881 48 H 0.064 0.936 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.426 -14.109 -19.946 25.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.036 4.036 3 C -0.229 4.229 4 N -0.265 5.265 5 C 0.093 3.907 6 C -0.555 4.555 7 H 0.068 0.932 8 C -0.189 4.189 9 N -0.570 5.570 10 Si 0.783 3.217 11 H -0.202 1.202 12 H -0.200 1.200 13 H -0.199 1.199 14 C 0.063 3.937 15 N -0.304 5.304 16 C 0.322 3.678 17 O -0.386 6.386 18 C -0.132 4.132 19 H 0.192 0.808 20 C -0.065 4.065 21 H 0.158 0.842 22 C -0.196 4.196 23 C -0.198 4.198 24 C -0.073 4.073 25 H 0.139 0.861 26 C -0.123 4.123 27 C -0.084 4.084 28 C -0.175 4.175 29 C 0.315 3.685 30 O -0.387 6.387 31 H 0.058 0.942 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.060 0.940 38 H -0.014 1.014 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.130 0.870 44 H 0.114 0.886 45 H 0.140 0.860 46 H 0.115 0.885 47 H 0.137 0.863 48 H 0.083 0.917 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.044 -13.995 -19.459 24.982 hybrid contribution -0.253 1.510 1.998 2.517 sum 6.790 -12.485 -17.461 22.514 Atomic orbital electron populations 1.21736 0.94118 1.01475 1.01458 1.21851 0.96196 0.92696 0.92863 1.22308 1.00447 0.98128 1.02008 1.61944 1.12165 1.49044 1.03309 1.19298 0.94697 0.90978 0.85681 1.21470 1.43146 0.98005 0.92882 0.93155 1.25709 0.95018 0.96554 1.01595 1.70056 1.45977 1.16473 1.24465 0.85514 0.78030 0.78959 0.79229 1.20198 1.19998 1.19943 1.21815 0.90728 0.86191 0.94959 1.46974 1.62888 1.09828 1.10692 1.21276 0.72826 0.92956 0.80751 1.90694 1.48756 1.37127 1.61977 1.23643 1.04402 0.87975 0.97226 0.80815 1.22972 0.87980 0.96991 0.98552 0.84242 1.24316 0.98974 0.99083 0.97260 1.24254 0.98894 0.98945 0.97743 1.23015 0.88409 0.95850 1.00054 0.86059 1.24048 1.05154 0.93115 0.90029 1.23242 1.00431 0.94531 0.90162 1.21583 0.91907 0.99026 1.04976 1.22003 0.72898 0.83789 0.89779 1.90747 1.46817 1.81669 1.19453 0.94247 0.90301 0.93147 0.89922 0.93732 0.90487 0.94004 1.01374 0.95797 0.92678 0.90602 0.91876 0.86965 0.88557 0.86015 0.88482 0.86259 0.91721 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.77 9.18 71.98 0.66 -4.11 16 2 C 0.07 2.80 2.87 44.92 0.13 2.93 16 3 C -0.17 -6.35 8.54 71.98 0.61 -5.73 16 4 N -0.54 -24.64 4.47 -887.79 -3.96 -28.60 16 5 C 0.22 12.01 3.27 85.56 0.28 12.29 16 6 C -0.52 -31.13 8.53 25.60 0.22 -30.91 16 7 H 0.05 3.19 7.81 -2.91 -0.02 3.16 16 8 C 0.01 0.56 5.46 84.65 0.46 1.03 16 9 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 10 Si 0.96 47.73 29.54 68.60 2.03 49.76 16 11 H -0.28 -14.06 7.11 99.48 0.71 -13.35 16 12 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 14 C 0.27 11.81 5.07 170.81 0.87 12.67 16 15 N -0.56 -19.85 2.58 -764.99 -1.97 -21.82 16 16 C 0.53 15.47 5.01 87.96 0.44 15.91 16 17 O -0.51 -17.02 15.74 -2.89 -0.05 -17.06 16 18 C -0.11 -1.99 3.64 -9.37 -0.03 -2.02 16 19 H 0.17 1.70 8.02 -2.39 -0.02 1.68 16 20 C -0.05 -0.70 4.98 -8.12 -0.04 -0.74 16 21 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 22 C -0.18 -4.30 8.53 25.78 0.22 -4.09 16 23 C -0.18 -4.86 8.51 25.79 0.22 -4.64 16 24 C -0.05 -1.03 4.56 -8.12 -0.04 -1.06 16 25 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 26 C -0.09 -0.86 6.64 33.56 0.22 -0.64 16 27 C -0.08 -1.65 0.92 -50.08 -0.05 -1.69 16 28 C -0.12 -1.57 9.16 71.98 0.66 -0.91 16 29 C 0.53 18.12 5.34 88.63 0.47 18.59 16 30 O -0.51 -22.95 17.46 -2.85 -0.05 -23.00 16 31 H 0.04 1.63 6.28 -2.39 -0.02 1.61 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.08 3.10 5.34 -2.39 -0.01 3.09 16 35 H 0.04 1.67 6.47 -2.39 -0.02 1.66 16 36 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.04 1.73 6.74 -2.38 -0.02 1.71 16 38 H -0.03 -1.84 7.33 -2.39 -0.02 -1.85 16 39 H 0.02 1.40 5.88 -2.39 -0.01 1.39 16 40 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 41 H 0.08 3.74 6.93 -2.39 -0.02 3.72 16 42 H 0.06 2.63 5.83 -2.39 -0.01 2.62 16 43 H 0.11 3.07 8.06 -2.91 -0.02 3.05 16 44 H 0.10 3.30 8.06 -2.91 -0.02 3.27 16 45 H 0.12 0.38 7.55 -2.38 -0.02 0.37 16 46 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.12 0.57 7.56 -2.39 -0.02 0.55 16 48 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -78.13 375.92 2.53 -75.60 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.95 Total: 15.20 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 5.31 Total: 6.87 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -5.65 Total: -107.37 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.10 Total: -40.06 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -78.13 2.53 -75.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902075512.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.785 kcal (2) G-P(sol) polarization free energy of solvation -78.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds