Wall clock time and date at job start Tue Mar 31 2020 16:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46921 * 2 1 4 4 N 1.46899 * 109.46935 * 179.97438 * 3 2 1 5 5 C 1.46844 * 110.99530 * 170.00174 * 4 3 2 6 6 C 1.53041 * 109.52054 * 185.84166 * 5 4 3 7 7 C 1.53117 * 109.27775 * 300.81980 * 6 5 4 8 8 N 1.46499 * 109.52294 * 177.55975 * 7 6 5 9 9 C 1.34776 * 120.00532 * 155.00097 * 8 7 6 10 10 O 1.21596 * 119.99483 * 0.02562 * 9 8 7 11 11 C 1.47529 * 120.00576 * 179.97438 * 9 8 7 12 12 C 1.39668 * 120.19410 * 0.02562 * 11 9 8 13 13 C 1.37835 * 119.91853 * 179.97438 * 12 11 9 14 14 C 1.38573 * 120.31903 * 0.02562 * 13 12 11 15 15 C 1.38022 * 120.40696 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.06839 * 359.95623 * 15 14 13 17 17 O 1.35527 * 120.16025 * 180.02562 * 16 15 14 18 18 C 1.34817 * 116.99627 * 354.39561 * 17 16 15 19 19 H 1.07998 * 120.00286 * 5.06815 * 18 17 16 20 20 C 1.38705 * 119.99676 * 185.06799 * 18 17 16 21 21 N 1.31514 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99619 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47501 * 60.00015 * 22 20 18 24 24 H 1.48510 * 109.46856 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47250 * 299.99489 * 22 20 18 26 26 C 1.53120 * 109.16023 * 57.65578 * 7 6 5 27 27 C 1.46840 * 111.00146 * 294.21413 * 4 3 2 28 28 H 1.09006 * 109.46895 * 60.00252 * 1 2 3 29 29 H 1.08997 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47455 * 299.99707 * 1 2 3 31 31 H 1.09000 * 109.47455 * 240.00293 * 2 1 3 32 32 H 1.08998 * 109.46986 * 120.00041 * 2 1 3 33 33 H 1.09000 * 109.46817 * 59.99902 * 3 2 1 34 34 H 1.09000 * 109.47136 * 300.00330 * 3 2 1 35 35 H 1.09000 * 109.46671 * 65.82556 * 5 4 3 36 36 H 1.09001 * 109.45798 * 305.85226 * 5 4 3 37 37 H 1.09001 * 109.50061 * 180.87972 * 6 5 4 38 38 H 1.08997 * 109.50328 * 60.76248 * 6 5 4 39 39 H 1.08993 * 109.52397 * 297.68346 * 7 6 5 40 40 H 0.97003 * 120.00039 * 335.00477 * 8 7 6 41 41 H 1.07997 * 120.04248 * 0.26955 * 12 11 9 42 42 H 1.07992 * 119.83718 * 179.97438 * 13 12 11 43 43 H 1.08000 * 119.79251 * 179.97438 * 14 13 12 44 44 H 1.07996 * 119.96390 * 179.97438 * 15 14 13 45 45 H 0.96997 * 120.00153 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.50213 * 62.28686 * 26 7 6 47 47 H 1.08996 * 109.50123 * 182.40019 * 26 7 6 48 48 H 1.08998 * 109.46223 * 294.17096 * 27 4 3 49 49 H 1.09000 * 109.46371 * 54.15549 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0352 2.7927 -0.2374 6 6 5.5582 2.7310 -0.3749 7 6 6.1583 2.1477 0.9073 8 7 7.6112 2.0321 0.7592 9 6 8.4024 2.0363 1.8503 10 8 7.9101 2.1356 2.9577 11 6 9.8654 1.9192 1.7013 12 6 10.4351 1.8044 0.4313 13 6 11.8028 1.6959 0.2986 14 6 12.6169 1.6996 1.4199 15 6 12.0680 1.8113 2.6813 16 6 10.6925 1.9219 2.8341 17 8 10.1516 2.0323 4.0718 18 6 10.9913 1.9117 5.1197 19 1 12.0540 1.8173 4.9520 20 6 10.4902 1.9089 6.4131 21 7 9.1962 2.0243 6.6172 22 14 11.6538 1.7425 7.8649 23 1 12.6198 2.8703 7.8569 24 1 10.8745 1.7665 9.1289 25 1 12.3917 0.4579 7.7633 26 6 5.5576 0.7618 1.1581 27 6 4.0347 0.8805 1.2512 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.7721 3.4381 0.6007 36 1 3.6037 3.1942 -1.1543 37 1 5.9499 3.7354 -0.5360 38 1 5.8217 2.0969 -1.2214 39 1 5.9289 2.8028 1.7476 40 1 8.0039 1.9525 -0.1242 41 1 9.8053 1.8054 -0.4460 42 1 12.2419 1.6067 -0.6840 43 1 13.6875 1.6137 1.3061 44 1 12.7091 1.8130 3.5504 45 1 8.8457 2.0219 7.5217 46 1 5.8212 0.0967 0.3358 47 1 5.9491 0.3592 2.0923 48 1 3.7717 1.5348 2.0823 49 1 3.6030 -0.1068 1.4154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919809471.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:01 Heat of formation + Delta-G solvation = -40.351512 kcal Electronic energy + Delta-G solvation = -28549.863890 eV Core-core repulsion = 24670.230868 eV Total energy + Delta-G solvation = -3879.633023 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.86802 -39.10838 -37.83515 -36.31885 -35.37361 -33.36364 -32.32670 -31.28153 -30.87082 -29.78667 -28.89583 -26.12795 -25.34026 -23.69796 -23.35015 -22.40428 -21.37062 -20.93630 -19.98123 -19.66471 -18.02236 -17.50559 -16.39158 -16.07701 -15.62647 -15.41275 -14.82105 -14.65480 -14.39652 -14.34847 -14.20333 -13.98926 -13.80866 -13.63797 -13.56494 -12.93449 -12.84520 -12.77318 -12.47340 -12.42622 -12.20069 -11.81118 -11.70391 -11.42692 -11.32400 -11.25515 -11.10735 -11.05731 -10.94814 -10.87434 -10.79582 -10.49107 -10.46061 -10.37864 -9.55189 -8.86527 -8.80176 -8.49628 -8.42575 -8.24655 -7.29193 -6.43121 -4.03036 1.74089 2.33776 3.12203 3.14356 3.16619 3.67658 3.76417 3.78348 3.94585 4.61559 4.66453 4.74876 4.83365 4.97106 5.05118 5.09143 5.11950 5.19592 5.23929 5.31194 5.36062 5.42729 5.47258 5.51469 5.54685 5.58231 5.65310 5.69103 5.74067 5.78987 5.80869 5.93503 5.99666 6.05848 6.07432 6.08230 6.14006 6.31330 6.45842 6.58441 6.71465 6.92940 6.96911 6.99787 7.05813 7.08238 7.25865 7.30756 7.71323 7.93691 8.18968 8.96502 9.15173 9.69291 10.70658 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012826 B = 0.002831 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.551826 B = 9888.956825 C =11639.997899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.055 3.945 4 N -0.540 5.540 5 C 0.060 3.940 6 C -0.122 4.122 7 C 0.150 3.850 8 N -0.739 5.739 9 C 0.555 3.445 10 O -0.502 6.502 11 C -0.227 4.227 12 C -0.038 4.038 13 C -0.231 4.231 14 C -0.051 4.051 15 C -0.239 4.239 16 C 0.189 3.811 17 O -0.124 6.124 18 C -0.404 4.404 19 H 0.093 0.907 20 C 0.045 3.955 21 N -0.833 5.833 22 Si 0.940 3.060 23 H -0.269 1.269 24 H -0.277 1.277 25 H -0.269 1.269 26 C -0.126 4.126 27 C 0.056 3.944 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.032 0.968 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.391 0.609 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.110 0.890 44 H 0.131 0.869 45 H 0.271 0.729 46 H 0.069 0.931 47 H 0.076 0.924 48 H 0.036 0.964 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.647 -1.256 -14.994 17.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.073 4.073 4 N -0.265 5.265 5 C -0.068 4.068 6 C -0.160 4.160 7 C 0.045 3.955 8 N -0.394 5.394 9 C 0.344 3.656 10 O -0.376 6.376 11 C -0.232 4.232 12 C -0.057 4.057 13 C -0.250 4.250 14 C -0.070 4.070 15 C -0.258 4.258 16 C 0.129 3.871 17 O -0.022 6.022 18 C -0.480 4.480 19 H 0.110 0.890 20 C -0.163 4.163 21 N -0.465 5.465 22 Si 0.764 3.236 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.194 1.194 26 C -0.165 4.165 27 C -0.072 4.072 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.226 0.774 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.054 0.946 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.278 -1.408 -14.185 17.574 hybrid contribution 0.664 0.376 0.874 1.160 sum -9.614 -1.032 -13.311 16.453 Atomic orbital electron populations 1.21740 0.95761 1.01721 1.01670 1.21557 0.95214 0.96481 1.02814 1.22128 0.87286 0.97240 1.00634 1.61984 1.07067 1.21863 1.35584 1.22001 0.94895 0.89188 1.00713 1.21852 0.94577 1.01537 0.98058 1.20809 0.80172 0.96599 0.97940 1.45945 1.05942 1.78283 1.09207 1.18241 0.86494 0.76706 0.84151 1.90941 1.75400 1.46901 1.24329 1.18876 0.91859 1.20240 0.92186 1.20768 0.94931 0.95516 0.94490 1.20462 0.93402 1.13393 0.97768 1.20892 0.98624 0.95179 0.92289 1.21154 0.94708 1.11880 0.98042 1.19288 0.90805 0.90526 0.86464 1.84178 1.35643 1.72739 1.09602 1.21446 0.90222 1.52868 0.83457 0.88961 1.25374 0.96683 0.96226 0.98004 1.70116 1.11576 1.42421 1.22342 0.85807 0.79165 0.79265 0.79338 1.19380 1.20176 1.19375 1.21988 0.93682 0.97831 1.03024 1.22119 0.95468 0.99957 0.89656 0.92777 0.92580 0.92876 0.91156 0.91812 0.94964 0.90964 0.94633 0.90569 0.90925 0.90679 0.89944 0.77447 0.87036 0.87303 0.87222 0.85118 0.91853 0.91187 0.90545 0.94592 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 37.16 0.37 -0.68 16 2 C -0.12 -1.03 5.86 -26.73 -0.16 -1.19 16 3 C 0.05 0.50 4.96 -3.82 -0.02 0.48 16 4 N -0.54 -5.85 4.66 -234.67 -1.09 -6.95 16 5 C 0.06 0.62 5.46 -3.83 -0.02 0.60 16 6 C -0.12 -1.34 5.57 -26.65 -0.15 -1.49 16 7 C 0.15 2.21 2.52 -67.81 -0.17 2.04 16 8 N -0.74 -12.01 5.03 -54.73 -0.28 -12.28 16 9 C 0.55 12.20 7.73 -12.47 -0.10 12.11 16 10 O -0.50 -13.71 14.83 -16.57 -0.25 -13.95 16 11 C -0.23 -4.95 5.89 -104.81 -0.62 -5.57 16 12 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 13 C -0.23 -3.81 10.03 -39.61 -0.40 -4.21 16 14 C -0.05 -0.91 10.03 -39.54 -0.40 -1.31 16 15 C -0.24 -5.16 9.16 -39.44 -0.36 -5.53 16 16 C 0.19 4.72 6.66 -38.60 -0.26 4.47 16 17 O -0.12 -3.66 7.84 -21.08 -0.17 -3.83 16 18 C -0.40 -11.50 9.49 30.90 0.29 -11.20 16 19 H 0.09 2.38 5.21 -52.49 -0.27 2.10 16 20 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 21 N -0.83 -25.22 13.67 55.48 0.76 -24.47 16 22 Si 0.94 20.63 29.55 -169.99 -5.02 15.60 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 26 C -0.13 -1.81 5.67 -26.65 -0.15 -1.96 16 27 C 0.06 0.69 5.29 -3.84 -0.02 0.67 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 33 H 0.03 0.31 8.12 -51.93 -0.42 -0.12 16 34 H 0.07 0.59 7.99 -51.93 -0.41 0.18 16 35 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.66 8.02 -51.93 -0.42 0.24 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.46 7.57 -51.93 -0.39 1.06 16 40 H 0.39 5.13 6.64 -40.82 -0.27 4.86 16 41 H 0.11 1.48 6.40 -52.49 -0.34 1.14 16 42 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 45 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.90 6.21 -51.93 -0.32 0.58 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -33.97 390.22 -10.47 -44.44 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -7.69 Total: 8.18 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -2.62 Total: -12.63 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.61 Total: -43.69 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.41 Total: -17.78 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -33.97 -10.47 -44.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919809471.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.091 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds