Wall clock time and date at job start Tue Mar 31 2020 16:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46921 * 2 1 4 4 N 1.46899 * 109.46935 * 179.97438 * 3 2 1 5 5 C 1.46844 * 110.99530 * 170.00174 * 4 3 2 6 6 C 1.53041 * 109.52054 * 185.84166 * 5 4 3 7 7 C 1.53117 * 109.27775 * 300.81980 * 6 5 4 8 8 N 1.46499 * 109.52294 * 177.55975 * 7 6 5 9 9 C 1.34776 * 120.00532 * 155.00097 * 8 7 6 10 10 O 1.21596 * 119.99483 * 0.02562 * 9 8 7 11 11 C 1.47529 * 120.00576 * 179.97438 * 9 8 7 12 12 C 1.39668 * 120.19410 * 0.02562 * 11 9 8 13 13 C 1.37835 * 119.91853 * 179.97438 * 12 11 9 14 14 C 1.38573 * 120.31903 * 0.02562 * 13 12 11 15 15 C 1.38022 * 120.40696 * 0.02562 * 14 13 12 16 16 C 1.38831 * 120.06839 * 359.95623 * 15 14 13 17 17 O 1.35527 * 120.16025 * 180.02562 * 16 15 14 18 18 C 1.34817 * 116.99627 * 354.39561 * 17 16 15 19 19 H 1.07998 * 120.00286 * 5.06815 * 18 17 16 20 20 C 1.38705 * 119.99676 * 185.06799 * 18 17 16 21 21 N 1.31514 * 119.99991 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99619 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47501 * 60.00015 * 22 20 18 24 24 H 1.48510 * 109.46856 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47250 * 299.99489 * 22 20 18 26 26 C 1.53120 * 109.16023 * 57.65578 * 7 6 5 27 27 C 1.46840 * 111.00146 * 294.21413 * 4 3 2 28 28 H 1.09006 * 109.46895 * 60.00252 * 1 2 3 29 29 H 1.08997 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47455 * 299.99707 * 1 2 3 31 31 H 1.09000 * 109.47455 * 240.00293 * 2 1 3 32 32 H 1.08998 * 109.46986 * 120.00041 * 2 1 3 33 33 H 1.09000 * 109.46817 * 59.99902 * 3 2 1 34 34 H 1.09000 * 109.47136 * 300.00330 * 3 2 1 35 35 H 1.09000 * 109.46671 * 65.82556 * 5 4 3 36 36 H 1.09001 * 109.45798 * 305.85226 * 5 4 3 37 37 H 1.09001 * 109.50061 * 180.87972 * 6 5 4 38 38 H 1.08997 * 109.50328 * 60.76248 * 6 5 4 39 39 H 1.08993 * 109.52397 * 297.68346 * 7 6 5 40 40 H 0.97003 * 120.00039 * 335.00477 * 8 7 6 41 41 H 1.07997 * 120.04248 * 0.26955 * 12 11 9 42 42 H 1.07992 * 119.83718 * 179.97438 * 13 12 11 43 43 H 1.08000 * 119.79251 * 179.97438 * 14 13 12 44 44 H 1.07996 * 119.96390 * 179.97438 * 15 14 13 45 45 H 0.96997 * 120.00153 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.50213 * 62.28686 * 26 7 6 47 47 H 1.08996 * 109.50123 * 182.40019 * 26 7 6 48 48 H 1.08998 * 109.46223 * 294.17096 * 27 4 3 49 49 H 1.09000 * 109.46371 * 54.15549 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0352 2.7927 -0.2374 6 6 5.5582 2.7310 -0.3749 7 6 6.1583 2.1477 0.9073 8 7 7.6112 2.0321 0.7592 9 6 8.4024 2.0363 1.8503 10 8 7.9101 2.1356 2.9577 11 6 9.8654 1.9192 1.7013 12 6 10.4351 1.8044 0.4313 13 6 11.8028 1.6959 0.2986 14 6 12.6169 1.6996 1.4199 15 6 12.0680 1.8113 2.6813 16 6 10.6925 1.9219 2.8341 17 8 10.1516 2.0323 4.0718 18 6 10.9913 1.9117 5.1197 19 1 12.0540 1.8173 4.9520 20 6 10.4902 1.9089 6.4131 21 7 9.1962 2.0243 6.6172 22 14 11.6538 1.7425 7.8649 23 1 12.6198 2.8703 7.8569 24 1 10.8745 1.7665 9.1289 25 1 12.3917 0.4579 7.7633 26 6 5.5576 0.7618 1.1581 27 6 4.0347 0.8805 1.2512 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.7721 3.4381 0.6007 36 1 3.6037 3.1942 -1.1543 37 1 5.9499 3.7354 -0.5360 38 1 5.8217 2.0969 -1.2214 39 1 5.9289 2.8028 1.7476 40 1 8.0039 1.9525 -0.1242 41 1 9.8053 1.8054 -0.4460 42 1 12.2419 1.6067 -0.6840 43 1 13.6875 1.6137 1.3061 44 1 12.7091 1.8130 3.5504 45 1 8.8457 2.0219 7.5217 46 1 5.8212 0.0967 0.3358 47 1 5.9491 0.3592 2.0923 48 1 3.7717 1.5348 2.0823 49 1 3.6030 -0.1068 1.4154 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919809471.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:00 Heat of formation + Delta-G solvation = -63.730204 kcal Electronic energy + Delta-G solvation = -28550.877667 eV Core-core repulsion = 24670.230868 eV Total energy + Delta-G solvation = -3880.646799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.40449 -40.45691 -39.36685 -38.01656 -36.56271 -34.51209 -34.30772 -32.61687 -31.89276 -31.09649 -30.55655 -27.45729 -26.92182 -24.93821 -24.43830 -23.71383 -22.90980 -21.75759 -21.44503 -20.94621 -19.84365 -19.16659 -17.85929 -17.50936 -16.74250 -16.44245 -16.32340 -16.03599 -15.94996 -15.75093 -15.66734 -15.35405 -15.22192 -14.96687 -14.61040 -14.40195 -14.36079 -14.18323 -13.67725 -13.55434 -13.31009 -13.07622 -12.99146 -12.69696 -12.64736 -12.50636 -12.36300 -12.24489 -12.21178 -12.15655 -12.09579 -11.72324 -11.55406 -11.41832 -11.32922 -10.83012 -10.57021 -10.05393 -9.76787 -9.35186 -9.03258 -8.45017 -6.16033 0.13448 0.73385 1.30950 1.44158 1.48927 2.11399 2.15322 2.26919 2.86450 2.87688 3.22956 3.47516 3.67276 3.78979 3.97164 4.03660 4.04821 4.09983 4.16351 4.22973 4.28696 4.36372 4.42124 4.51137 4.52643 4.58774 4.59749 4.68475 4.72594 4.77202 4.82949 4.90217 4.96908 4.99303 5.03822 5.07239 5.12571 5.15348 5.22561 5.26212 5.31436 5.43083 5.49077 5.61383 5.63394 5.70169 5.95648 6.04026 6.13236 6.17879 6.74110 6.94178 7.52235 7.80590 8.75363 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012826 B = 0.002831 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.551826 B = 9888.956825 C =11639.997899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C 0.054 3.946 4 N -0.537 5.537 5 C 0.058 3.942 6 C -0.109 4.109 7 C 0.147 3.853 8 N -0.712 5.712 9 C 0.548 3.452 10 O -0.569 6.569 11 C -0.245 4.245 12 C -0.029 4.029 13 C -0.200 4.200 14 C -0.041 4.041 15 C -0.259 4.259 16 C 0.147 3.853 17 O -0.189 6.189 18 C -0.428 4.428 19 H 0.107 0.893 20 C -0.023 4.023 21 N -0.906 5.906 22 Si 1.022 2.978 23 H -0.253 1.253 24 H -0.274 1.274 25 H -0.254 1.254 26 C -0.119 4.119 27 C 0.063 3.937 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.025 0.975 34 H 0.091 0.909 35 H 0.023 0.977 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.042 0.958 40 H 0.412 0.588 41 H 0.161 0.839 42 H 0.165 0.835 43 H 0.154 0.846 44 H 0.123 0.877 45 H 0.270 0.730 46 H 0.085 0.915 47 H 0.032 0.968 48 H 0.016 0.984 49 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 -1.589 -19.989 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.073 4.073 4 N -0.262 5.262 5 C -0.070 4.070 6 C -0.147 4.147 7 C 0.042 3.958 8 N -0.367 5.367 9 C 0.338 3.662 10 O -0.448 6.448 11 C -0.250 4.250 12 C -0.048 4.048 13 C -0.219 4.219 14 C -0.059 4.059 15 C -0.278 4.278 16 C 0.092 3.908 17 O -0.091 6.091 18 C -0.504 4.504 19 H 0.124 0.876 20 C -0.222 4.222 21 N -0.542 5.542 22 Si 0.840 3.160 23 H -0.177 1.177 24 H -0.198 1.198 25 H -0.178 1.178 26 C -0.158 4.158 27 C -0.065 4.065 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.109 0.891 35 H 0.042 0.958 36 H 0.125 0.875 37 H 0.103 0.897 38 H 0.115 0.885 39 H 0.061 0.939 40 H 0.250 0.750 41 H 0.179 0.821 42 H 0.182 0.818 43 H 0.171 0.829 44 H 0.140 0.860 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.051 0.949 48 H 0.035 0.965 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.748 -1.746 -19.318 21.278 hybrid contribution 0.261 0.457 1.921 1.991 sum -8.487 -1.289 -17.398 19.400 Atomic orbital electron populations 1.21714 0.94572 1.02219 1.02070 1.21533 0.96238 0.95817 1.02247 1.22222 0.85983 0.97915 1.01205 1.62034 1.08251 1.22140 1.33781 1.22105 0.94445 0.88773 1.01676 1.21803 0.94809 1.02250 0.95819 1.20939 0.79332 0.96402 0.99141 1.45694 1.06311 1.76014 1.08653 1.18558 0.87336 0.75955 0.84341 1.90926 1.76526 1.50103 1.27272 1.19330 0.91739 1.20436 0.93488 1.21321 0.96392 0.93307 0.93733 1.21186 0.92691 1.08316 0.99672 1.21436 1.01197 0.92470 0.90761 1.21300 0.93290 1.13175 1.00042 1.20116 0.93020 0.91394 0.86264 1.84185 1.36972 1.76819 1.11149 1.22001 0.90998 1.53205 0.84199 0.87628 1.26765 0.98574 0.95622 1.01222 1.70320 1.14384 1.46701 1.22777 0.84631 0.76682 0.80102 0.74600 1.17734 1.19821 1.17811 1.21866 0.95111 0.97575 1.01251 1.21980 0.94054 1.00298 0.90205 0.91735 0.92081 0.93106 0.91062 0.92999 0.95620 0.89061 0.95834 0.87546 0.89677 0.88492 0.93933 0.75013 0.82119 0.81763 0.82860 0.85966 0.92089 0.89623 0.94905 0.96549 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.91 71.98 0.71 -1.11 16 2 C -0.12 -1.86 5.86 30.60 0.18 -1.68 16 3 C 0.05 0.90 4.96 86.31 0.43 1.33 16 4 N -0.54 -10.88 4.66 -896.37 -4.17 -15.06 16 5 C 0.06 1.08 5.46 86.33 0.47 1.55 16 6 C -0.11 -2.14 5.57 30.65 0.17 -1.97 16 7 C 0.15 4.44 2.52 45.07 0.11 4.55 16 8 N -0.71 -22.96 5.03 -445.34 -2.24 -25.20 16 9 C 0.55 25.33 7.73 86.69 0.67 26.00 16 10 O -0.57 -34.26 14.83 16.88 0.25 -34.01 16 11 C -0.25 -10.80 5.89 -19.99 -0.12 -10.91 16 12 C -0.03 -0.88 9.54 22.52 0.21 -0.67 16 13 C -0.20 -5.36 10.03 22.25 0.22 -5.14 16 14 C -0.04 -1.27 10.03 22.30 0.22 -1.05 16 15 C -0.26 -11.21 9.16 22.36 0.20 -11.01 16 16 C 0.15 7.71 6.66 22.91 0.15 7.86 16 17 O -0.19 -12.20 7.84 0.74 0.01 -12.19 16 18 C -0.43 -26.29 9.49 67.93 0.64 -25.64 16 19 H 0.11 5.80 5.21 -2.91 -0.02 5.79 16 20 C -0.02 -1.37 5.49 84.85 0.47 -0.90 16 21 N -0.91 -60.14 13.67 21.62 0.30 -59.85 16 22 Si 1.02 44.83 29.55 68.60 2.03 46.86 16 23 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 24 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 25 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 26 C -0.12 -3.57 5.67 30.65 0.17 -3.40 16 27 C 0.06 1.62 5.29 86.33 0.46 2.08 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.05 0.92 6.43 -2.39 -0.02 0.90 16 33 H 0.03 0.47 8.12 -2.39 -0.02 0.45 16 34 H 0.09 1.21 7.99 -2.39 -0.02 1.19 16 35 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.11 1.42 8.02 -2.39 -0.02 1.40 16 37 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 40 H 0.41 9.51 6.64 -92.71 -0.62 8.89 16 41 H 0.16 3.23 6.40 -2.91 -0.02 3.21 16 42 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 44 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 45 H 0.27 16.46 8.31 -92.71 -0.77 15.69 16 46 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.09 2.06 6.21 -2.39 -0.01 2.04 16 Total: -1.00 -88.22 390.22 1.89 -86.33 By element: Atomic # 1 Polarization: 32.89 SS G_CDS: 0.34 Total: 33.22 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 5.39 Total: -20.11 kcal Atomic # 7 Polarization: -93.98 SS G_CDS: -6.12 Total: -100.10 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: 0.26 Total: -46.21 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -88.22 1.89 -86.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919809471.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.600 kcal (2) G-P(sol) polarization free energy of solvation -88.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds