Wall clock time and date at job start Tue Mar 31 2020 16:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47143 * 2 1 4 4 N 1.46894 * 109.47230 * 120.00309 * 2 1 3 5 5 C 1.47838 * 111.00474 * 47.56168 * 4 2 1 6 6 C 1.54904 * 104.80115 * 146.36184 * 5 4 2 7 7 C 1.55140 * 101.65148 * 322.93500 * 6 5 4 8 8 C 1.47450 * 111.00011 * 168.40611 * 4 2 1 9 9 H 1.08995 * 109.88811 * 117.17320 * 8 4 2 10 10 C 1.50698 * 109.88475 * 356.14566 * 8 4 2 11 11 O 1.21276 * 120.00162 * 297.36849 * 10 8 4 12 12 N 1.34779 * 119.99681 * 117.37320 * 10 8 4 13 13 C 1.46506 * 119.99754 * 179.97438 * 12 10 8 14 14 C 1.50696 * 109.47010 * 179.97438 * 13 12 10 15 15 C 1.38308 * 119.92994 * 269.72332 * 14 13 12 16 16 C 1.38102 * 120.06672 * 180.27967 * 15 14 13 17 17 C 1.38876 * 119.93047 * 0.02562 * 16 15 14 18 18 O 1.35750 * 120.06528 * 179.97438 * 17 16 15 19 19 C 1.34838 * 117.00115 * 174.50508 * 18 17 16 20 20 H 1.07998 * 119.99419 * 5.08321 * 19 18 17 21 21 C 1.38647 * 120.00095 * 185.08403 * 19 18 17 22 22 N 1.31557 * 119.99762 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00364 * 0.02562 * 21 19 18 24 24 H 1.48509 * 109.47054 * 90.00014 * 23 21 19 25 25 H 1.48501 * 109.47346 * 209.99850 * 23 21 19 26 26 H 1.48497 * 109.46882 * 330.00294 * 23 21 19 27 27 C 1.38878 * 119.86332 * 359.97438 * 17 16 15 28 28 C 1.38090 * 119.93402 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46827 * 299.99928 * 1 2 3 30 30 H 1.09000 * 109.47429 * 59.99938 * 1 2 3 31 31 H 1.09003 * 109.46729 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46827 * 240.00072 * 2 1 3 33 33 H 1.08999 * 109.47375 * 185.07275 * 3 2 1 34 34 H 1.09000 * 109.47090 * 305.07652 * 3 2 1 35 35 H 1.08995 * 109.47174 * 65.07176 * 3 2 1 36 36 H 1.08997 * 110.37484 * 265.19786 * 5 4 2 37 37 H 1.09002 * 110.37435 * 27.53167 * 5 4 2 38 38 H 1.09006 * 110.99257 * 81.02165 * 6 5 4 39 39 H 1.09001 * 110.99370 * 204.80095 * 6 5 4 40 40 H 1.09000 * 110.70394 * 277.26754 * 7 6 5 41 41 H 1.08998 * 110.70449 * 154.03724 * 7 6 5 42 42 H 0.96994 * 120.00364 * 359.97438 * 12 10 8 43 43 H 1.08996 * 109.47087 * 59.99410 * 13 12 10 44 44 H 1.08999 * 109.47146 * 299.99373 * 13 12 10 45 45 H 1.08000 * 119.96479 * 0.25442 * 15 14 13 46 46 H 1.08003 * 120.02976 * 180.02562 * 16 15 14 47 47 H 0.97000 * 119.99990 * 180.02562 * 22 21 19 48 48 H 1.08005 * 120.03072 * 179.97438 * 27 17 16 49 49 H 1.07996 * 119.96812 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.3183 -1.9797 1.3915 6 6 2.3802 -2.9198 2.0145 7 6 3.6665 -2.4777 1.2683 8 6 3.4672 -0.9564 1.1031 9 1 3.9947 -0.4230 1.8938 10 6 3.9803 -0.5153 -0.2434 11 8 3.5646 -1.0428 -1.2532 12 7 4.9012 0.4653 -0.3253 13 6 5.4005 0.8938 -1.6344 14 6 6.4126 1.9950 -1.4501 15 6 6.0014 3.3154 -1.4383 16 6 6.9273 4.3270 -1.2754 17 6 8.2725 4.0173 -1.1239 18 8 9.1851 5.0096 -0.9641 19 6 10.4557 4.6375 -0.7087 20 1 10.7248 3.5916 -0.7210 21 6 11.4166 5.5974 -0.4305 22 7 12.6561 5.2342 -0.1808 23 14 10.9509 7.4063 -0.4085 24 1 10.5264 7.7916 0.9614 25 1 12.1230 8.2241 -0.8119 26 1 9.8331 7.6411 -1.3575 27 6 8.6823 2.6904 -1.1362 28 6 7.7517 1.6833 -1.2995 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1262 1.4439 -0.0909 34 1 1.6044 1.9819 -0.8410 35 1 1.7528 1.9294 0.9319 36 1 0.4759 -1.8549 2.0719 37 1 0.9783 -2.3733 0.4336 38 1 2.4725 -2.7482 3.0870 39 1 2.1470 -3.9641 1.8070 40 1 3.7346 -2.9653 0.2958 41 1 4.5517 -2.6876 1.8687 42 1 5.2335 0.8874 0.4823 43 1 4.5701 1.2611 -2.2374 44 1 5.8699 0.0491 -2.1385 45 1 4.9551 3.5556 -1.5569 46 1 6.6054 5.3580 -1.2658 47 1 13.3284 5.9058 0.0142 48 1 9.7279 2.4465 -1.0190 49 1 8.0698 0.6513 -1.3095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931749977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:20 Heat of formation + Delta-G solvation = -20.454699 kcal Electronic energy + Delta-G solvation = -28612.688207 eV Core-core repulsion = 24733.917974 eV Total energy + Delta-G solvation = -3878.770232 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19613 -39.37701 -38.12292 -36.97269 -34.67091 -34.60713 -32.50993 -30.90809 -30.39130 -29.55432 -29.30867 -27.08403 -26.15445 -24.71368 -22.79812 -22.21101 -21.62877 -20.99736 -20.66738 -19.70179 -18.01858 -17.49800 -17.21382 -16.92953 -16.15985 -15.58151 -15.48429 -14.97880 -14.62961 -14.25900 -14.21430 -13.93485 -13.85456 -13.73660 -13.41341 -13.32435 -12.88351 -12.75192 -12.58964 -12.37732 -12.30514 -12.27723 -12.11791 -11.94250 -11.52701 -11.45774 -11.38937 -11.12144 -11.04429 -10.99569 -10.94760 -10.87139 -10.77587 -10.24592 -10.14698 -9.50913 -9.04395 -8.97068 -8.41403 -8.37216 -7.50494 -6.52119 -4.19194 1.91585 1.99649 2.38959 3.14544 3.18902 3.25242 3.33471 3.69989 4.14868 4.23019 4.34579 4.38158 4.62830 4.72092 4.82574 4.88646 4.92244 4.99842 5.06963 5.11175 5.16609 5.29458 5.33202 5.42900 5.51385 5.51975 5.55354 5.56145 5.62860 5.67843 5.70445 5.76694 5.79262 5.83136 5.90039 5.99996 6.03527 6.20534 6.22228 6.38266 6.43668 6.64555 6.65593 6.82488 6.86738 7.08973 7.15549 7.44249 7.47630 7.68189 7.91878 8.09015 8.82388 9.42791 10.54995 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.002257 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.640116 B =12404.003896 C =12829.006011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.029 3.971 3 C -0.159 4.159 4 N -0.499 5.499 5 C 0.040 3.960 6 C -0.127 4.127 7 C -0.129 4.129 8 C 0.052 3.948 9 H 0.101 0.899 10 C 0.506 3.494 11 O -0.542 6.542 12 N -0.717 5.717 13 C 0.176 3.824 14 C -0.207 4.207 15 C -0.055 4.055 16 C -0.195 4.195 17 C 0.167 3.833 18 O -0.212 6.212 19 C -0.392 4.392 20 H 0.108 0.892 21 C 0.065 3.935 22 N -0.875 5.875 23 Si 0.906 3.094 24 H -0.272 1.272 25 H -0.281 1.281 26 H -0.259 1.259 27 C -0.224 4.224 28 C -0.052 4.052 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.404 0.596 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.114 0.886 46 H 0.118 0.882 47 H 0.281 0.719 48 H 0.134 0.866 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.558 -12.488 3.358 24.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 C -0.218 4.218 4 N -0.225 5.225 5 C -0.087 4.087 6 C -0.165 4.165 7 C -0.168 4.168 8 C -0.059 4.059 9 H 0.119 0.881 10 C 0.293 3.707 11 O -0.421 6.421 12 N -0.368 5.368 13 C 0.054 3.946 14 C -0.208 4.208 15 C -0.074 4.074 16 C -0.214 4.214 17 C 0.114 3.886 18 O -0.116 6.116 19 C -0.467 4.467 20 H 0.125 0.875 21 C -0.139 4.139 22 N -0.512 5.512 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.207 1.207 26 H -0.183 1.183 27 C -0.243 4.243 28 C -0.071 4.071 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.239 0.761 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.132 0.868 46 H 0.136 0.864 47 H 0.091 0.909 48 H 0.152 0.848 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.707 -12.187 3.073 24.223 hybrid contribution 0.476 0.523 -0.229 0.743 sum -20.232 -11.664 2.843 23.526 Atomic orbital electron populations 1.21904 0.94598 1.01698 1.02015 1.22595 0.95776 0.95927 0.93583 1.22142 1.02751 0.94955 1.01903 1.64178 1.00596 1.20315 1.37370 1.23101 0.97285 0.88367 0.99969 1.22703 0.94208 0.99308 1.00328 1.22756 0.99121 0.92966 1.01924 1.22630 0.91198 0.97491 0.94578 0.88149 1.20914 0.78912 0.79270 0.91599 1.90583 1.57489 1.56113 1.37881 1.46554 1.42103 1.37640 1.10542 1.20014 0.95278 0.95303 0.84008 1.19257 0.93806 0.93500 1.14268 1.20526 0.98027 0.91611 0.97260 1.20211 0.90427 0.99449 1.11303 1.19182 0.89172 0.87853 0.92413 1.83578 1.18602 1.31777 1.77683 1.20786 0.80586 0.96563 1.48786 0.87493 1.24489 0.94020 1.00174 0.95252 1.69641 1.01341 1.35561 1.44650 0.86174 0.78632 0.82576 0.79501 1.19777 1.20667 1.18314 1.21275 1.00905 0.92227 1.09889 1.20689 0.92056 0.98182 0.96154 0.92237 0.92281 0.92710 0.89057 0.91116 0.92461 0.92104 0.89929 0.93006 0.90410 0.90534 0.90203 0.90104 0.76078 0.91462 0.91457 0.86815 0.86360 0.90881 0.84794 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.82 37.16 0.33 -0.98 16 2 C 0.03 0.31 2.11 -67.71 -0.14 0.17 16 3 C -0.16 -1.71 8.97 37.16 0.33 -1.38 16 4 N -0.50 -5.00 5.03 -216.82 -1.09 -6.09 16 5 C 0.04 0.34 5.30 -2.30 -0.01 0.33 16 6 C -0.13 -0.92 7.08 -24.59 -0.17 -1.10 16 7 C -0.13 -1.12 6.43 -24.91 -0.16 -1.28 16 8 C 0.05 0.52 3.63 -67.88 -0.25 0.27 16 9 H 0.10 0.89 7.94 -51.93 -0.41 0.48 16 10 C 0.51 6.05 3.93 -10.98 -0.04 6.00 16 11 O -0.54 -8.08 13.82 5.56 0.08 -8.01 16 12 N -0.72 -8.14 3.86 -61.47 -0.24 -8.38 16 13 C 0.18 2.25 5.80 -5.19 -0.03 2.22 16 14 C -0.21 -3.06 5.25 -104.57 -0.55 -3.61 16 15 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 16 C -0.19 -3.56 9.99 -39.40 -0.39 -3.96 16 17 C 0.17 3.62 6.65 -39.11 -0.26 3.36 16 18 O -0.21 -5.35 8.59 0.02 0.00 -5.35 16 19 C -0.39 -10.62 9.95 30.88 0.31 -10.32 16 20 H 0.11 2.95 5.44 -52.49 -0.29 2.67 16 21 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 22 N -0.87 -24.55 13.96 55.48 0.77 -23.77 16 23 Si 0.91 20.98 28.62 -169.99 -4.86 16.12 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.26 -6.02 7.11 56.52 0.40 -5.62 16 27 C -0.22 -4.48 9.17 -39.40 -0.36 -4.84 16 28 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.46 6.40 -51.93 -0.33 0.13 16 32 H 0.09 1.22 4.78 -52.03 -0.25 0.97 16 33 H 0.07 0.80 4.45 -51.93 -0.23 0.56 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.47 6.92 -51.93 -0.36 0.11 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.82 7.44 -51.93 -0.39 0.43 16 41 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.40 4.16 8.32 -40.82 -0.34 3.82 16 43 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 44 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 45 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 46 H 0.12 2.03 8.06 -52.48 -0.42 1.61 16 47 H 0.28 7.27 8.31 -40.82 -0.34 6.94 16 48 H 0.13 2.86 5.64 -52.48 -0.30 2.56 16 49 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 384.26 15.07 5.79 5.79 Total: -1.00 -29.10 384.26 -9.33 -38.43 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.52 Total: 7.18 kcal Atomic # 6 Polarization: -13.65 SS G_CDS: -2.27 Total: -15.92 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.55 Total: -38.24 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: 0.08 Total: -13.36 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.86 Total: 16.12 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.10 -9.33 -38.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931749977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.975 kcal (2) G-P(sol) polarization free energy of solvation -29.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds