Wall clock time and date at job start Tue Mar 31 2020 16:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47143 * 2 1 4 4 N 1.46894 * 109.47230 * 120.00309 * 2 1 3 5 5 C 1.47838 * 111.00474 * 47.56168 * 4 2 1 6 6 C 1.54904 * 104.80115 * 146.36184 * 5 4 2 7 7 C 1.55140 * 101.65148 * 322.93500 * 6 5 4 8 8 C 1.47450 * 111.00011 * 168.40611 * 4 2 1 9 9 H 1.08995 * 109.88811 * 117.17320 * 8 4 2 10 10 C 1.50698 * 109.88475 * 356.14566 * 8 4 2 11 11 O 1.21276 * 120.00162 * 297.36849 * 10 8 4 12 12 N 1.34779 * 119.99681 * 117.37320 * 10 8 4 13 13 C 1.46506 * 119.99754 * 179.97438 * 12 10 8 14 14 C 1.50696 * 109.47010 * 179.97438 * 13 12 10 15 15 C 1.38308 * 119.92994 * 269.72332 * 14 13 12 16 16 C 1.38102 * 120.06672 * 180.27967 * 15 14 13 17 17 C 1.38876 * 119.93047 * 0.02562 * 16 15 14 18 18 O 1.35750 * 120.06528 * 179.97438 * 17 16 15 19 19 C 1.34838 * 117.00115 * 174.50508 * 18 17 16 20 20 H 1.07998 * 119.99419 * 5.08321 * 19 18 17 21 21 C 1.38647 * 120.00095 * 185.08403 * 19 18 17 22 22 N 1.31557 * 119.99762 * 179.97438 * 21 19 18 23 23 Si 1.86798 * 120.00364 * 0.02562 * 21 19 18 24 24 H 1.48509 * 109.47054 * 90.00014 * 23 21 19 25 25 H 1.48501 * 109.47346 * 209.99850 * 23 21 19 26 26 H 1.48497 * 109.46882 * 330.00294 * 23 21 19 27 27 C 1.38878 * 119.86332 * 359.97438 * 17 16 15 28 28 C 1.38090 * 119.93402 * 0.02562 * 27 17 16 29 29 H 1.09004 * 109.46827 * 299.99928 * 1 2 3 30 30 H 1.09000 * 109.47429 * 59.99938 * 1 2 3 31 31 H 1.09003 * 109.46729 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46827 * 240.00072 * 2 1 3 33 33 H 1.08999 * 109.47375 * 185.07275 * 3 2 1 34 34 H 1.09000 * 109.47090 * 305.07652 * 3 2 1 35 35 H 1.08995 * 109.47174 * 65.07176 * 3 2 1 36 36 H 1.08997 * 110.37484 * 265.19786 * 5 4 2 37 37 H 1.09002 * 110.37435 * 27.53167 * 5 4 2 38 38 H 1.09006 * 110.99257 * 81.02165 * 6 5 4 39 39 H 1.09001 * 110.99370 * 204.80095 * 6 5 4 40 40 H 1.09000 * 110.70394 * 277.26754 * 7 6 5 41 41 H 1.08998 * 110.70449 * 154.03724 * 7 6 5 42 42 H 0.96994 * 120.00364 * 359.97438 * 12 10 8 43 43 H 1.08996 * 109.47087 * 59.99410 * 13 12 10 44 44 H 1.08999 * 109.47146 * 299.99373 * 13 12 10 45 45 H 1.08000 * 119.96479 * 0.25442 * 15 14 13 46 46 H 1.08003 * 120.02976 * 180.02562 * 16 15 14 47 47 H 0.97000 * 119.99990 * 180.02562 * 22 21 19 48 48 H 1.08005 * 120.03072 * 179.97438 * 27 17 16 49 49 H 1.07996 * 119.96812 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1993 5 6 1.3183 -1.9797 1.3915 6 6 2.3802 -2.9198 2.0145 7 6 3.6665 -2.4777 1.2683 8 6 3.4672 -0.9564 1.1031 9 1 3.9947 -0.4230 1.8938 10 6 3.9803 -0.5153 -0.2434 11 8 3.5646 -1.0428 -1.2532 12 7 4.9012 0.4653 -0.3253 13 6 5.4005 0.8938 -1.6344 14 6 6.4126 1.9950 -1.4501 15 6 6.0014 3.3154 -1.4383 16 6 6.9273 4.3270 -1.2754 17 6 8.2725 4.0173 -1.1239 18 8 9.1851 5.0096 -0.9641 19 6 10.4557 4.6375 -0.7087 20 1 10.7248 3.5916 -0.7210 21 6 11.4166 5.5974 -0.4305 22 7 12.6561 5.2342 -0.1808 23 14 10.9509 7.4063 -0.4085 24 1 10.5264 7.7916 0.9614 25 1 12.1230 8.2241 -0.8119 26 1 9.8331 7.6411 -1.3575 27 6 8.6823 2.6904 -1.1362 28 6 7.7517 1.6833 -1.2995 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1262 1.4439 -0.0909 34 1 1.6044 1.9819 -0.8410 35 1 1.7528 1.9294 0.9319 36 1 0.4759 -1.8549 2.0719 37 1 0.9783 -2.3733 0.4336 38 1 2.4725 -2.7482 3.0870 39 1 2.1470 -3.9641 1.8070 40 1 3.7346 -2.9653 0.2958 41 1 4.5517 -2.6876 1.8687 42 1 5.2335 0.8874 0.4823 43 1 4.5701 1.2611 -2.2374 44 1 5.8699 0.0491 -2.1385 45 1 4.9551 3.5556 -1.5569 46 1 6.6054 5.3580 -1.2658 47 1 13.3284 5.9058 0.0142 48 1 9.7279 2.4465 -1.0190 49 1 8.0698 0.6513 -1.3095 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931749977.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:19 Heat of formation + Delta-G solvation = -38.536231 kcal Electronic energy + Delta-G solvation = -28613.472281 eV Core-core repulsion = 24733.917974 eV Total energy + Delta-G solvation = -3879.554306 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.07731 -40.94223 -39.16439 -38.37376 -35.76447 -35.40002 -34.45665 -32.07969 -31.82950 -30.50119 -30.09989 -27.88800 -27.71707 -26.19673 -23.77164 -23.61911 -22.43526 -22.03626 -21.74937 -20.64055 -19.84305 -19.14411 -18.14978 -17.82053 -17.11492 -16.74318 -16.52296 -16.28869 -15.93363 -15.72430 -15.63999 -15.21205 -14.97179 -14.72697 -14.59444 -14.36709 -14.25726 -14.07425 -13.96501 -13.49693 -13.24100 -13.19009 -13.08156 -13.00196 -12.71699 -12.58954 -12.48793 -12.35012 -12.17410 -12.05637 -11.95803 -11.86123 -11.74274 -11.68354 -11.30835 -11.11890 -10.90290 -10.01852 -9.84686 -9.24783 -9.05676 -8.51454 -6.24498 0.47694 0.53458 1.32223 1.35328 1.46849 1.51899 2.22006 2.27068 2.78236 2.94875 3.04031 3.13716 3.51551 3.69505 3.77790 3.89679 3.99171 4.11847 4.12520 4.14963 4.18566 4.37325 4.40914 4.52342 4.52990 4.55105 4.69671 4.75262 4.78648 4.79457 4.86735 4.91527 4.92446 4.94495 5.02352 5.06429 5.08230 5.20653 5.23854 5.30933 5.32651 5.35747 5.44648 5.52832 5.69250 5.77712 5.87263 5.91638 6.04496 6.17874 6.50570 6.82754 7.15691 7.55606 8.59805 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.022655 B = 0.002257 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.640116 B =12404.003896 C =12829.006011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.029 3.971 3 C -0.157 4.157 4 N -0.500 5.500 5 C 0.036 3.964 6 C -0.120 4.120 7 C -0.129 4.129 8 C 0.051 3.949 9 H 0.115 0.885 10 C 0.510 3.490 11 O -0.571 6.571 12 N -0.711 5.711 13 C 0.183 3.817 14 C -0.173 4.173 15 C -0.044 4.044 16 C -0.191 4.191 17 C 0.129 3.871 18 O -0.242 6.242 19 C -0.400 4.400 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.921 5.921 23 Si 0.970 3.030 24 H -0.265 1.265 25 H -0.269 1.269 26 H -0.262 1.262 27 C -0.238 4.238 28 C -0.050 4.050 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.041 0.959 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.412 0.588 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.152 0.848 46 H 0.131 0.869 47 H 0.285 0.715 48 H 0.109 0.891 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.769 -13.020 4.024 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.079 4.079 3 C -0.215 4.215 4 N -0.226 5.226 5 C -0.091 4.091 6 C -0.158 4.158 7 C -0.168 4.168 8 C -0.060 4.060 9 H 0.133 0.867 10 C 0.298 3.702 11 O -0.452 6.452 12 N -0.363 5.363 13 C 0.060 3.940 14 C -0.174 4.174 15 C -0.063 4.063 16 C -0.210 4.210 17 C 0.080 3.920 18 O -0.149 6.149 19 C -0.476 4.476 20 H 0.101 0.899 21 C -0.188 4.188 22 N -0.562 5.562 23 Si 0.792 3.208 24 H -0.190 1.190 25 H -0.194 1.194 26 H -0.186 1.186 27 C -0.257 4.257 28 C -0.068 4.068 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.113 0.887 37 H 0.060 0.940 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.248 0.752 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.170 0.830 46 H 0.148 0.852 47 H 0.095 0.905 48 H 0.127 0.873 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.958 -12.749 3.746 27.396 hybrid contribution 1.150 0.386 -0.503 1.313 sum -22.808 -12.363 3.243 26.145 Atomic orbital electron populations 1.21866 0.93429 1.02153 1.02345 1.22519 0.96801 0.95750 0.92846 1.22120 1.02342 0.94954 1.02116 1.64261 1.00665 1.21070 1.36634 1.23192 0.97987 0.88013 0.99886 1.22710 0.92739 0.99674 1.00682 1.22768 1.00652 0.91920 1.01431 1.22763 0.91320 0.98449 0.93498 0.86720 1.21249 0.78308 0.78647 0.92040 1.90587 1.58390 1.57048 1.39128 1.46385 1.42033 1.37694 1.10189 1.19896 0.94781 0.94416 0.84902 1.19519 0.93447 0.94233 1.10224 1.20923 0.99295 0.90859 0.95205 1.20510 0.89225 1.01069 1.10245 1.19736 0.90126 0.88053 0.94109 1.83526 1.17957 1.32812 1.80599 1.20708 0.82032 0.95765 1.49072 0.89938 1.25281 0.93924 1.04353 0.95241 1.69727 1.02353 1.36930 1.47173 0.85227 0.78400 0.77598 0.79575 1.18983 1.19391 1.18629 1.21261 1.00594 0.92874 1.10949 1.20905 0.92195 0.98451 0.95272 0.91775 0.92035 0.92247 0.91573 0.91631 0.92324 0.91800 0.88706 0.94017 0.89178 0.89351 0.92118 0.88573 0.75183 0.90713 0.91447 0.83040 0.85153 0.90537 0.87285 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 8.82 71.98 0.64 -1.63 16 2 C 0.03 0.57 2.11 44.92 0.09 0.66 16 3 C -0.16 -2.98 8.97 71.98 0.65 -2.34 16 4 N -0.50 -8.85 5.03 -839.88 -4.22 -13.07 16 5 C 0.04 0.53 5.30 86.77 0.46 0.99 16 6 C -0.12 -1.41 7.08 31.98 0.23 -1.18 16 7 C -0.13 -1.94 6.43 31.77 0.20 -1.74 16 8 C 0.05 0.88 3.63 44.51 0.16 1.04 16 9 H 0.12 1.66 7.94 -2.39 -0.02 1.64 16 10 C 0.51 11.05 3.93 87.66 0.34 11.39 16 11 O -0.57 -16.17 13.82 -3.02 -0.04 -16.21 16 12 N -0.71 -14.06 3.86 -466.79 -1.80 -15.86 16 13 C 0.18 4.08 5.80 85.63 0.50 4.57 16 14 C -0.17 -4.58 5.25 -19.83 -0.10 -4.69 16 15 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 16 C -0.19 -6.68 9.99 22.39 0.22 -6.45 16 17 C 0.13 5.68 6.65 22.58 0.15 5.83 16 18 O -0.24 -12.62 8.59 -22.83 -0.20 -12.81 16 19 C -0.40 -22.84 9.95 67.92 0.68 -22.16 16 20 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 21 C 0.01 0.61 5.49 84.83 0.47 1.07 16 22 N -0.92 -54.02 13.96 21.61 0.30 -53.72 16 23 Si 0.97 44.29 28.62 68.60 1.96 46.26 16 24 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 27 C -0.24 -9.73 9.17 22.39 0.21 -9.52 16 28 C -0.05 -1.56 9.69 22.25 0.22 -1.34 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.89 6.40 -2.39 -0.02 0.87 16 32 H 0.07 1.69 4.78 -4.00 -0.02 1.67 16 33 H 0.07 1.28 4.45 -2.39 -0.01 1.27 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.06 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.04 0.70 6.92 -2.39 -0.02 0.68 16 38 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 40 H 0.06 1.16 7.44 -2.39 -0.02 1.14 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.41 7.12 8.32 -92.71 -0.77 6.35 16 43 H 0.07 1.65 8.08 -2.39 -0.02 1.63 16 44 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 45 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 46 H 0.13 4.21 8.06 -2.91 -0.02 4.19 16 47 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 48 H 0.11 5.00 5.64 -2.91 -0.02 4.98 16 49 H 0.13 3.57 8.06 -2.91 -0.02 3.54 16 Total: -1.00 -66.27 384.26 1.50 -64.76 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.18 Total: 27.12 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 5.32 Total: -26.47 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -5.72 Total: -82.64 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.24 Total: -29.03 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.96 Total: 46.26 kcal Total: -66.27 1.50 -64.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931749977.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.229 kcal (2) G-P(sol) polarization free energy of solvation -66.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds